###################################
1651 groups of orthologs
1725 in-paralogs from A.gossypii
2075 in-paralogs from C.intestinalis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 1814 bits
Score difference with first non-orthologous sequence - A.gossypii:1076 C.intestinalis:1814

Q75A34              	100.00%		F6SUC2              	100.00%
Bootstrap support for Q75A34 as seed ortholog is 100%.
Bootstrap support for F6SUC2 as seed ortholog is 100%.

Group of orthologs #2. Best score 1785 bits
Score difference with first non-orthologous sequence - A.gossypii:1785 C.intestinalis:1785

Q75EK8              	100.00%		F6T0F1              	100.00%
Bootstrap support for Q75EK8 as seed ortholog is 100%.
Bootstrap support for F6T0F1 as seed ortholog is 100%.

Group of orthologs #3. Best score 1626 bits
Score difference with first non-orthologous sequence - A.gossypii:1626 C.intestinalis:1626

Q756A8              	100.00%		F7AMF6              	100.00%
Bootstrap support for Q756A8 as seed ortholog is 100%.
Bootstrap support for F7AMF6 as seed ortholog is 100%.

Group of orthologs #4. Best score 1530 bits
Score difference with first non-orthologous sequence - A.gossypii:1530 C.intestinalis:1530

Q752B8              	100.00%		F6WUQ7              	100.00%
Bootstrap support for Q752B8 as seed ortholog is 100%.
Bootstrap support for F6WUQ7 as seed ortholog is 100%.

Group of orthologs #5. Best score 1496 bits
Score difference with first non-orthologous sequence - A.gossypii:275 C.intestinalis:1496

Q74ZT5              	100.00%		F6ZLB7              	100.00%
Bootstrap support for Q74ZT5 as seed ortholog is 99%.
Bootstrap support for F6ZLB7 as seed ortholog is 100%.

Group of orthologs #6. Best score 1396 bits
Score difference with first non-orthologous sequence - A.gossypii:662 C.intestinalis:1396

Q753Q4              	100.00%		F6QR00              	100.00%
Bootstrap support for Q753Q4 as seed ortholog is 100%.
Bootstrap support for F6QR00 as seed ortholog is 100%.

Group of orthologs #7. Best score 1219 bits
Score difference with first non-orthologous sequence - A.gossypii:1219 C.intestinalis:1219

Q75ED6              	100.00%		F6TWU9              	100.00%
Bootstrap support for Q75ED6 as seed ortholog is 100%.
Bootstrap support for F6TWU9 as seed ortholog is 100%.

Group of orthologs #8. Best score 1191 bits
Score difference with first non-orthologous sequence - A.gossypii:1191 C.intestinalis:1052

Q755X4              	100.00%		F7AKQ3              	100.00%
Bootstrap support for Q755X4 as seed ortholog is 100%.
Bootstrap support for F7AKQ3 as seed ortholog is 100%.

Group of orthologs #9. Best score 1125 bits
Score difference with first non-orthologous sequence - A.gossypii:1125 C.intestinalis:1125

Q75DB0              	100.00%		F6XJM1              	100.00%
Bootstrap support for Q75DB0 as seed ortholog is 100%.
Bootstrap support for F6XJM1 as seed ortholog is 100%.

Group of orthologs #10. Best score 1116 bits
Score difference with first non-orthologous sequence - A.gossypii:674 C.intestinalis:1116

Q754B2              	100.00%		F6VLN4              	100.00%
Bootstrap support for Q754B2 as seed ortholog is 100%.
Bootstrap support for F6VLN4 as seed ortholog is 100%.

Group of orthologs #11. Best score 1099 bits
Score difference with first non-orthologous sequence - A.gossypii:1099 C.intestinalis:1099

Q9C1M7              	100.00%		F6V620              	100.00%
                    	       		H2XPC8              	54.89%
                    	       		F6PHB9              	50.34%
                    	       		F7AU91              	11.50%
                    	       		F6ZZ40              	10.78%
                    	       		F6RNF5              	5.70%
Bootstrap support for Q9C1M7 as seed ortholog is 100%.
Bootstrap support for F6V620 as seed ortholog is 100%.

Group of orthologs #12. Best score 1081 bits
Score difference with first non-orthologous sequence - A.gossypii:646 C.intestinalis:475

Q754C8              	100.00%		F6XKY1              	100.00%
Bootstrap support for Q754C8 as seed ortholog is 100%.
Bootstrap support for F6XKY1 as seed ortholog is 100%.

Group of orthologs #13. Best score 1033 bits
Score difference with first non-orthologous sequence - A.gossypii:1033 C.intestinalis:1033

Q74Z60              	100.00%		F6Y8C3              	100.00%
Bootstrap support for Q74Z60 as seed ortholog is 100%.
Bootstrap support for F6Y8C3 as seed ortholog is 100%.

Group of orthologs #14. Best score 1029 bits
Score difference with first non-orthologous sequence - A.gossypii:1029 C.intestinalis:1029

Q755V8              	100.00%		F7AKG2              	100.00%
Bootstrap support for Q755V8 as seed ortholog is 100%.
Bootstrap support for F7AKG2 as seed ortholog is 100%.

Group of orthologs #15. Best score 1022 bits
Score difference with first non-orthologous sequence - A.gossypii:1022 C.intestinalis:1022

Q756S6              	100.00%		F6R8H4              	100.00%
Q75CP0              	12.90%		
Bootstrap support for Q756S6 as seed ortholog is 100%.
Bootstrap support for F6R8H4 as seed ortholog is 100%.

Group of orthologs #16. Best score 1022 bits
Score difference with first non-orthologous sequence - A.gossypii:1022 C.intestinalis:1022

Q758E3              	100.00%		F6Z5U4              	100.00%
Bootstrap support for Q758E3 as seed ortholog is 100%.
Bootstrap support for F6Z5U4 as seed ortholog is 100%.

Group of orthologs #17. Best score 1015 bits
Score difference with first non-orthologous sequence - A.gossypii:325 C.intestinalis:295

Q750B0              	100.00%		F6PGX9              	100.00%
Bootstrap support for Q750B0 as seed ortholog is 99%.
Bootstrap support for F6PGX9 as seed ortholog is 99%.

Group of orthologs #18. Best score 997 bits
Score difference with first non-orthologous sequence - A.gossypii:997 C.intestinalis:997

Q752Y8              	100.00%		F6U4V1              	100.00%
Bootstrap support for Q752Y8 as seed ortholog is 100%.
Bootstrap support for F6U4V1 as seed ortholog is 100%.

Group of orthologs #19. Best score 990 bits
Score difference with first non-orthologous sequence - A.gossypii:364 C.intestinalis:463

Q75EQ9              	100.00%		F6YKR9              	100.00%
Bootstrap support for Q75EQ9 as seed ortholog is 100%.
Bootstrap support for F6YKR9 as seed ortholog is 100%.

Group of orthologs #20. Best score 989 bits
Score difference with first non-orthologous sequence - A.gossypii:989 C.intestinalis:989

Q75AP8              	100.00%		H2XJT1              	100.00%
Bootstrap support for Q75AP8 as seed ortholog is 100%.
Bootstrap support for H2XJT1 as seed ortholog is 100%.

Group of orthologs #21. Best score 982 bits
Score difference with first non-orthologous sequence - A.gossypii:982 C.intestinalis:982

Q75A42              	100.00%		F6W1H2              	100.00%
Bootstrap support for Q75A42 as seed ortholog is 100%.
Bootstrap support for F6W1H2 as seed ortholog is 100%.

Group of orthologs #22. Best score 979 bits
Score difference with first non-orthologous sequence - A.gossypii:526 C.intestinalis:979

Q75DS1              	100.00%		F6S181              	100.00%
Bootstrap support for Q75DS1 as seed ortholog is 100%.
Bootstrap support for F6S181 as seed ortholog is 100%.

Group of orthologs #23. Best score 977 bits
Score difference with first non-orthologous sequence - A.gossypii:274 C.intestinalis:146

Q756R7              	100.00%		F6W8I3              	100.00%
Q754F6              	28.76%		
Bootstrap support for Q756R7 as seed ortholog is 100%.
Bootstrap support for F6W8I3 as seed ortholog is 99%.

Group of orthologs #24. Best score 967 bits
Score difference with first non-orthologous sequence - A.gossypii:633 C.intestinalis:967

Q755K6              	100.00%		F6WCR1              	100.00%
Bootstrap support for Q755K6 as seed ortholog is 100%.
Bootstrap support for F6WCR1 as seed ortholog is 100%.

Group of orthologs #25. Best score 963 bits
Score difference with first non-orthologous sequence - A.gossypii:349 C.intestinalis:213

Q759C7              	100.00%		F6ZHQ8              	100.00%
Bootstrap support for Q759C7 as seed ortholog is 100%.
Bootstrap support for F6ZHQ8 as seed ortholog is 99%.

Group of orthologs #26. Best score 898 bits
Score difference with first non-orthologous sequence - A.gossypii:504 C.intestinalis:505

Q75AK6              	100.00%		H2XZZ5              	100.00%
Bootstrap support for Q75AK6 as seed ortholog is 100%.
Bootstrap support for H2XZZ5 as seed ortholog is 100%.

Group of orthologs #27. Best score 896 bits
Score difference with first non-orthologous sequence - A.gossypii:896 C.intestinalis:896

Q754A3              	100.00%		F6XQM9              	100.00%
Bootstrap support for Q754A3 as seed ortholog is 100%.
Bootstrap support for F6XQM9 as seed ortholog is 100%.

Group of orthologs #28. Best score 886 bits
Score difference with first non-orthologous sequence - A.gossypii:483 C.intestinalis:663

Q752N7              	100.00%		Q4H2Q8              	100.00%
Q754V7              	12.59%		
Bootstrap support for Q752N7 as seed ortholog is 100%.
Bootstrap support for Q4H2Q8 as seed ortholog is 100%.

Group of orthologs #29. Best score 876 bits
Score difference with first non-orthologous sequence - A.gossypii:876 C.intestinalis:876

Q758L7              	100.00%		F6SWL4              	100.00%
Bootstrap support for Q758L7 as seed ortholog is 100%.
Bootstrap support for F6SWL4 as seed ortholog is 100%.

Group of orthologs #30. Best score 873 bits
Score difference with first non-orthologous sequence - A.gossypii:873 C.intestinalis:708

Q75DS7              	100.00%		H2XQK9              	100.00%
Bootstrap support for Q75DS7 as seed ortholog is 100%.
Bootstrap support for H2XQK9 as seed ortholog is 100%.

Group of orthologs #31. Best score 867 bits
Score difference with first non-orthologous sequence - A.gossypii:867 C.intestinalis:867

Q758N1              	100.00%		F6UM75              	100.00%
Bootstrap support for Q758N1 as seed ortholog is 100%.
Bootstrap support for F6UM75 as seed ortholog is 100%.

Group of orthologs #32. Best score 867 bits
Score difference with first non-orthologous sequence - A.gossypii:867 C.intestinalis:867

Q75F16              	100.00%		F6YD90              	100.00%
Bootstrap support for Q75F16 as seed ortholog is 100%.
Bootstrap support for F6YD90 as seed ortholog is 100%.

Group of orthologs #33. Best score 854 bits
Score difference with first non-orthologous sequence - A.gossypii:854 C.intestinalis:438

Q759B4              	100.00%		H2Y1Z9              	100.00%
Bootstrap support for Q759B4 as seed ortholog is 100%.
Bootstrap support for H2Y1Z9 as seed ortholog is 100%.

Group of orthologs #34. Best score 841 bits
Score difference with first non-orthologous sequence - A.gossypii:841 C.intestinalis:841

Q755X5              	100.00%		F6RL41              	100.00%
Bootstrap support for Q755X5 as seed ortholog is 100%.
Bootstrap support for F6RL41 as seed ortholog is 100%.

Group of orthologs #35. Best score 841 bits
Score difference with first non-orthologous sequence - A.gossypii:841 C.intestinalis:777

Q74ZS3              	100.00%		F6XZ43              	100.00%
Bootstrap support for Q74ZS3 as seed ortholog is 100%.
Bootstrap support for F6XZ43 as seed ortholog is 100%.

Group of orthologs #36. Best score 837 bits
Score difference with first non-orthologous sequence - A.gossypii:837 C.intestinalis:837

Q74ZJ9              	100.00%		F6Y1Q3              	100.00%
Bootstrap support for Q74ZJ9 as seed ortholog is 100%.
Bootstrap support for F6Y1Q3 as seed ortholog is 100%.

Group of orthologs #37. Best score 824 bits
Score difference with first non-orthologous sequence - A.gossypii:497 C.intestinalis:397

Q758Q4              	100.00%		H2XRP2              	100.00%
Bootstrap support for Q758Q4 as seed ortholog is 100%.
Bootstrap support for H2XRP2 as seed ortholog is 100%.

Group of orthologs #38. Best score 816 bits
Score difference with first non-orthologous sequence - A.gossypii:717 C.intestinalis:362

Q75C49              	100.00%		H2XZY7              	100.00%
                    	       		H2Y265              	16.93%
                    	       		H2XWY7              	16.83%
                    	       		F7AY44              	16.53%
Bootstrap support for Q75C49 as seed ortholog is 100%.
Bootstrap support for H2XZY7 as seed ortholog is 99%.

Group of orthologs #39. Best score 805 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.intestinalis:112

Q75C78              	100.00%		F6SXM4              	100.00%
                    	       		F7BHA0              	17.14%
Bootstrap support for Q75C78 as seed ortholog is 99%.
Bootstrap support for F6SXM4 as seed ortholog is 99%.

Group of orthologs #40. Best score 798 bits
Score difference with first non-orthologous sequence - A.gossypii:798 C.intestinalis:798

Q9UVJ8              	100.00%		H2XJT5              	100.00%
Bootstrap support for Q9UVJ8 as seed ortholog is 100%.
Bootstrap support for H2XJT5 as seed ortholog is 100%.

Group of orthologs #41. Best score 794 bits
Score difference with first non-orthologous sequence - A.gossypii:223 C.intestinalis:274

Q753R1              	100.00%		H2XU53              	100.00%
Bootstrap support for Q753R1 as seed ortholog is 100%.
Bootstrap support for H2XU53 as seed ortholog is 100%.

Group of orthologs #42. Best score 784 bits
Score difference with first non-orthologous sequence - A.gossypii:784 C.intestinalis:784

Q753N2              	100.00%		F6TML4              	100.00%
Bootstrap support for Q753N2 as seed ortholog is 100%.
Bootstrap support for F6TML4 as seed ortholog is 100%.

Group of orthologs #43. Best score 770 bits
Score difference with first non-orthologous sequence - A.gossypii:210 C.intestinalis:295

Q759P9              	100.00%		F6UYA6              	100.00%
Bootstrap support for Q759P9 as seed ortholog is 99%.
Bootstrap support for F6UYA6 as seed ortholog is 100%.

Group of orthologs #44. Best score 768 bits
Score difference with first non-orthologous sequence - A.gossypii:768 C.intestinalis:325

Q759C3              	100.00%		F6WRK8              	100.00%
Bootstrap support for Q759C3 as seed ortholog is 100%.
Bootstrap support for F6WRK8 as seed ortholog is 100%.

Group of orthologs #45. Best score 765 bits
Score difference with first non-orthologous sequence - A.gossypii:658 C.intestinalis:765

Q753G0              	100.00%		F6Y4K6              	100.00%
Bootstrap support for Q753G0 as seed ortholog is 100%.
Bootstrap support for F6Y4K6 as seed ortholog is 100%.

Group of orthologs #46. Best score 758 bits
Score difference with first non-orthologous sequence - A.gossypii:758 C.intestinalis:758

Q755D6              	100.00%		F6QDE3              	100.00%
Bootstrap support for Q755D6 as seed ortholog is 100%.
Bootstrap support for F6QDE3 as seed ortholog is 100%.

Group of orthologs #47. Best score 756 bits
Score difference with first non-orthologous sequence - A.gossypii:756 C.intestinalis:756

Q752T2              	100.00%		F6XU15              	100.00%
Bootstrap support for Q752T2 as seed ortholog is 100%.
Bootstrap support for F6XU15 as seed ortholog is 100%.

Group of orthologs #48. Best score 750 bits
Score difference with first non-orthologous sequence - A.gossypii:750 C.intestinalis:117

Q75EP5              	100.00%		F6Q9K0              	100.00%
Bootstrap support for Q75EP5 as seed ortholog is 100%.
Bootstrap support for F6Q9K0 as seed ortholog is 97%.

Group of orthologs #49. Best score 748 bits
Score difference with first non-orthologous sequence - A.gossypii:633 C.intestinalis:688

Q758M7              	100.00%		H2XKD5              	100.00%
Bootstrap support for Q758M7 as seed ortholog is 100%.
Bootstrap support for H2XKD5 as seed ortholog is 100%.

Group of orthologs #50. Best score 746 bits
Score difference with first non-orthologous sequence - A.gossypii:746 C.intestinalis:186

Q757Q6              	100.00%		H2Y0Q1              	100.00%
Bootstrap support for Q757Q6 as seed ortholog is 100%.
Bootstrap support for H2Y0Q1 as seed ortholog is 99%.

Group of orthologs #51. Best score 745 bits
Score difference with first non-orthologous sequence - A.gossypii:745 C.intestinalis:745

Q755E1              	100.00%		F7BKT8              	100.00%
Bootstrap support for Q755E1 as seed ortholog is 100%.
Bootstrap support for F7BKT8 as seed ortholog is 100%.

Group of orthologs #52. Best score 742 bits
Score difference with first non-orthologous sequence - A.gossypii:591 C.intestinalis:616

Q75CZ5              	100.00%		F6UKC4              	100.00%
Bootstrap support for Q75CZ5 as seed ortholog is 100%.
Bootstrap support for F6UKC4 as seed ortholog is 100%.

Group of orthologs #53. Best score 742 bits
Score difference with first non-orthologous sequence - A.gossypii:389 C.intestinalis:742

Q754Q9              	100.00%		F6Z5E6              	100.00%
Bootstrap support for Q754Q9 as seed ortholog is 100%.
Bootstrap support for F6Z5E6 as seed ortholog is 100%.

Group of orthologs #54. Best score 740 bits
Score difference with first non-orthologous sequence - A.gossypii:740 C.intestinalis:740

Q75DQ3              	100.00%		F6VC80              	100.00%
Bootstrap support for Q75DQ3 as seed ortholog is 100%.
Bootstrap support for F6VC80 as seed ortholog is 100%.

Group of orthologs #55. Best score 737 bits
Score difference with first non-orthologous sequence - A.gossypii:495 C.intestinalis:418

P41752              	100.00%		H2XSX9              	100.00%
                    	       		H2XZ08              	20.32%
                    	       		F6ZIF2              	6.95%
Bootstrap support for P41752 as seed ortholog is 100%.
Bootstrap support for H2XSX9 as seed ortholog is 100%.

Group of orthologs #56. Best score 733 bits
Score difference with first non-orthologous sequence - A.gossypii:733 C.intestinalis:733

Q75BE4              	100.00%		F7A8C2              	100.00%
Bootstrap support for Q75BE4 as seed ortholog is 100%.
Bootstrap support for F7A8C2 as seed ortholog is 100%.

Group of orthologs #57. Best score 732 bits
Score difference with first non-orthologous sequence - A.gossypii:507 C.intestinalis:609

Q74ZH1              	100.00%		F6YYE4              	100.00%
Bootstrap support for Q74ZH1 as seed ortholog is 100%.
Bootstrap support for F6YYE4 as seed ortholog is 100%.

Group of orthologs #58. Best score 729 bits
Score difference with first non-orthologous sequence - A.gossypii:729 C.intestinalis:729

Q752M7              	100.00%		F6PV45              	100.00%
Bootstrap support for Q752M7 as seed ortholog is 100%.
Bootstrap support for F6PV45 as seed ortholog is 100%.

Group of orthologs #59. Best score 720 bits
Score difference with first non-orthologous sequence - A.gossypii:349 C.intestinalis:720

Q74ZS5              	100.00%		F6RW91              	100.00%
Bootstrap support for Q74ZS5 as seed ortholog is 100%.
Bootstrap support for F6RW91 as seed ortholog is 100%.

Group of orthologs #60. Best score 720 bits
Score difference with first non-orthologous sequence - A.gossypii:720 C.intestinalis:720

Q757E6              	100.00%		F6U4L6              	100.00%
Bootstrap support for Q757E6 as seed ortholog is 100%.
Bootstrap support for F6U4L6 as seed ortholog is 100%.

Group of orthologs #61. Best score 717 bits
Score difference with first non-orthologous sequence - A.gossypii:717 C.intestinalis:717

Q751H8              	100.00%		L7N0S7              	100.00%
                    	       		F6RR11              	14.53%
Bootstrap support for Q751H8 as seed ortholog is 100%.
Bootstrap support for L7N0S7 as seed ortholog is 100%.

Group of orthologs #62. Best score 715 bits
Score difference with first non-orthologous sequence - A.gossypii:715 C.intestinalis:477

Q752Y2              	100.00%		F6XCZ8              	100.00%
                    	       		F7B0Q2              	83.80%
                    	       		F6QB29              	83.33%
                    	       		F6SJ24              	82.87%
                    	       		F6QB20              	80.09%
                    	       		L7N0T5              	77.78%
                    	       		F6UV18              	23.61%
Bootstrap support for Q752Y2 as seed ortholog is 100%.
Bootstrap support for F6XCZ8 as seed ortholog is 100%.

Group of orthologs #63. Best score 715 bits
Score difference with first non-orthologous sequence - A.gossypii:715 C.intestinalis:59

Q75CI1              	100.00%		F6ZJN8              	100.00%
Bootstrap support for Q75CI1 as seed ortholog is 100%.
Bootstrap support for F6ZJN8 as seed ortholog is 100%.

Group of orthologs #64. Best score 714 bits
Score difference with first non-orthologous sequence - A.gossypii:714 C.intestinalis:464

Q75BP6              	100.00%		L7N0T3              	100.00%
                    	       		F6SYL0              	95.48%
Bootstrap support for Q75BP6 as seed ortholog is 100%.
Bootstrap support for L7N0T3 as seed ortholog is 100%.

Group of orthologs #65. Best score 706 bits
Score difference with first non-orthologous sequence - A.gossypii:706 C.intestinalis:105

Q8J2M3              	100.00%		F6YNJ1              	100.00%
Bootstrap support for Q8J2M3 as seed ortholog is 100%.
Bootstrap support for F6YNJ1 as seed ortholog is 98%.

Group of orthologs #66. Best score 703 bits
Score difference with first non-orthologous sequence - A.gossypii:388 C.intestinalis:564

Q74ZW9              	100.00%		F7ADN1              	100.00%
Bootstrap support for Q74ZW9 as seed ortholog is 100%.
Bootstrap support for F7ADN1 as seed ortholog is 100%.

Group of orthologs #67. Best score 703 bits
Score difference with first non-orthologous sequence - A.gossypii:539 C.intestinalis:367

Q757P3              	100.00%		H2XL55              	100.00%
Bootstrap support for Q757P3 as seed ortholog is 100%.
Bootstrap support for H2XL55 as seed ortholog is 100%.

Group of orthologs #68. Best score 701 bits
Score difference with first non-orthologous sequence - A.gossypii:701 C.intestinalis:701

Q74Z48              	100.00%		F7BJC2              	100.00%
Bootstrap support for Q74Z48 as seed ortholog is 100%.
Bootstrap support for F7BJC2 as seed ortholog is 100%.

Group of orthologs #69. Best score 700 bits
Score difference with first non-orthologous sequence - A.gossypii:700 C.intestinalis:700

Q759E6              	100.00%		F6QRG3              	100.00%
Bootstrap support for Q759E6 as seed ortholog is 100%.
Bootstrap support for F6QRG3 as seed ortholog is 100%.

Group of orthologs #70. Best score 700 bits
Score difference with first non-orthologous sequence - A.gossypii:368 C.intestinalis:700

Q75CF8              	100.00%		F6SI05              	100.00%
Bootstrap support for Q75CF8 as seed ortholog is 100%.
Bootstrap support for F6SI05 as seed ortholog is 100%.

Group of orthologs #71. Best score 698 bits
Score difference with first non-orthologous sequence - A.gossypii:698 C.intestinalis:698

Q75D54              	100.00%		F6TPR3              	100.00%
Bootstrap support for Q75D54 as seed ortholog is 100%.
Bootstrap support for F6TPR3 as seed ortholog is 100%.

Group of orthologs #72. Best score 694 bits
Score difference with first non-orthologous sequence - A.gossypii:694 C.intestinalis:694

Q753A6              	100.00%		F6QX34              	100.00%
Bootstrap support for Q753A6 as seed ortholog is 100%.
Bootstrap support for F6QX34 as seed ortholog is 100%.

Group of orthologs #73. Best score 693 bits
Score difference with first non-orthologous sequence - A.gossypii:693 C.intestinalis:693

Q75ES1              	100.00%		F7APZ8              	100.00%
Bootstrap support for Q75ES1 as seed ortholog is 100%.
Bootstrap support for F7APZ8 as seed ortholog is 100%.

Group of orthologs #74. Best score 690 bits
Score difference with first non-orthologous sequence - A.gossypii:299 C.intestinalis:50

Q75D00              	100.00%		A2SY09              	100.00%
                    	       		F6SCP4              	66.67%
                    	       		F6QBJ1              	40.58%
                    	       		L7N0T1              	34.78%
                    	       		F6T8C7              	33.33%
                    	       		F6SDC9              	33.33%
Bootstrap support for Q75D00 as seed ortholog is 100%.
Bootstrap support for A2SY09 as seed ortholog is 98%.

Group of orthologs #75. Best score 690 bits
Score difference with first non-orthologous sequence - A.gossypii:690 C.intestinalis:690

Q75DY5              	100.00%		F6Z743              	100.00%
Bootstrap support for Q75DY5 as seed ortholog is 100%.
Bootstrap support for F6Z743 as seed ortholog is 100%.

Group of orthologs #76. Best score 683 bits
Score difference with first non-orthologous sequence - A.gossypii:683 C.intestinalis:138

Q758Q9              	100.00%		F6TIZ3              	100.00%
Bootstrap support for Q758Q9 as seed ortholog is 100%.
Bootstrap support for F6TIZ3 as seed ortholog is 98%.

Group of orthologs #77. Best score 680 bits
Score difference with first non-orthologous sequence - A.gossypii:680 C.intestinalis:680

Q754K5              	100.00%		F7B8G8              	100.00%
Bootstrap support for Q754K5 as seed ortholog is 100%.
Bootstrap support for F7B8G8 as seed ortholog is 100%.

Group of orthologs #78. Best score 675 bits
Score difference with first non-orthologous sequence - A.gossypii:571 C.intestinalis:675

Q75C64              	100.00%		F6SI53              	100.00%
Bootstrap support for Q75C64 as seed ortholog is 100%.
Bootstrap support for F6SI53 as seed ortholog is 100%.

Group of orthologs #79. Best score 667 bits
Score difference with first non-orthologous sequence - A.gossypii:350 C.intestinalis:412

Q74ZC3              	100.00%		F7BA18              	100.00%
Bootstrap support for Q74ZC3 as seed ortholog is 100%.
Bootstrap support for F7BA18 as seed ortholog is 100%.

Group of orthologs #80. Best score 665 bits
Score difference with first non-orthologous sequence - A.gossypii:665 C.intestinalis:665

Q74Z74              	100.00%		H2XQX5              	100.00%
Bootstrap support for Q74Z74 as seed ortholog is 100%.
Bootstrap support for H2XQX5 as seed ortholog is 100%.

Group of orthologs #81. Best score 663 bits
Score difference with first non-orthologous sequence - A.gossypii:464 C.intestinalis:477

Q752H0              	100.00%		F6UCG0              	100.00%
Bootstrap support for Q752H0 as seed ortholog is 100%.
Bootstrap support for F6UCG0 as seed ortholog is 100%.

Group of orthologs #82. Best score 661 bits
Score difference with first non-orthologous sequence - A.gossypii:661 C.intestinalis:661

Q75C66              	100.00%		F6PZ06              	100.00%
Bootstrap support for Q75C66 as seed ortholog is 100%.
Bootstrap support for F6PZ06 as seed ortholog is 100%.

Group of orthologs #83. Best score 660 bits
Score difference with first non-orthologous sequence - A.gossypii:660 C.intestinalis:660

Q753V9              	100.00%		F7B6E8              	100.00%
Bootstrap support for Q753V9 as seed ortholog is 100%.
Bootstrap support for F7B6E8 as seed ortholog is 100%.

Group of orthologs #84. Best score 659 bits
Score difference with first non-orthologous sequence - A.gossypii:659 C.intestinalis:659

Q755V3              	100.00%		F7BEF3              	100.00%
Bootstrap support for Q755V3 as seed ortholog is 100%.
Bootstrap support for F7BEF3 as seed ortholog is 100%.

Group of orthologs #85. Best score 649 bits
Score difference with first non-orthologous sequence - A.gossypii:649 C.intestinalis:649

Q751B1              	100.00%		H2XVY7              	100.00%
Bootstrap support for Q751B1 as seed ortholog is 100%.
Bootstrap support for H2XVY7 as seed ortholog is 100%.

Group of orthologs #86. Best score 648 bits
Score difference with first non-orthologous sequence - A.gossypii:648 C.intestinalis:648

Q75D48              	100.00%		F6YFY0              	100.00%
Bootstrap support for Q75D48 as seed ortholog is 100%.
Bootstrap support for F6YFY0 as seed ortholog is 100%.

Group of orthologs #87. Best score 643 bits
Score difference with first non-orthologous sequence - A.gossypii:398 C.intestinalis:643

Q750C0              	100.00%		F6XJ08              	100.00%
Bootstrap support for Q750C0 as seed ortholog is 100%.
Bootstrap support for F6XJ08 as seed ortholog is 100%.

Group of orthologs #88. Best score 634 bits
Score difference with first non-orthologous sequence - A.gossypii:634 C.intestinalis:634

Q750T6              	100.00%		F6UE33              	100.00%
Bootstrap support for Q750T6 as seed ortholog is 100%.
Bootstrap support for F6UE33 as seed ortholog is 100%.

Group of orthologs #89. Best score 634 bits
Score difference with first non-orthologous sequence - A.gossypii:634 C.intestinalis:634

Q756G2              	100.00%		F6XN27              	100.00%
Bootstrap support for Q756G2 as seed ortholog is 100%.
Bootstrap support for F6XN27 as seed ortholog is 100%.

Group of orthologs #90. Best score 626 bits
Score difference with first non-orthologous sequence - A.gossypii:626 C.intestinalis:626

Q74Z89              	100.00%		F6W7K5              	100.00%
                    	       		F6W7I3              	82.67%
Bootstrap support for Q74Z89 as seed ortholog is 100%.
Bootstrap support for F6W7K5 as seed ortholog is 100%.

Group of orthologs #91. Best score 625 bits
Score difference with first non-orthologous sequence - A.gossypii:434 C.intestinalis:625

Q75D18              	100.00%		F6YQS6              	100.00%
Bootstrap support for Q75D18 as seed ortholog is 100%.
Bootstrap support for F6YQS6 as seed ortholog is 100%.

Group of orthologs #92. Best score 624 bits
Score difference with first non-orthologous sequence - A.gossypii:624 C.intestinalis:199

Q753T3              	100.00%		F6XCK4              	100.00%
Bootstrap support for Q753T3 as seed ortholog is 100%.
Bootstrap support for F6XCK4 as seed ortholog is 100%.

Group of orthologs #93. Best score 623 bits
Score difference with first non-orthologous sequence - A.gossypii:319 C.intestinalis:371

Q75A77              	100.00%		F7AUJ3              	100.00%
Bootstrap support for Q75A77 as seed ortholog is 100%.
Bootstrap support for F7AUJ3 as seed ortholog is 100%.

Group of orthologs #94. Best score 622 bits
Score difference with first non-orthologous sequence - A.gossypii:622 C.intestinalis:622

Q750R1              	100.00%		F6R8X1              	100.00%
Bootstrap support for Q750R1 as seed ortholog is 100%.
Bootstrap support for F6R8X1 as seed ortholog is 100%.

Group of orthologs #95. Best score 622 bits
Score difference with first non-orthologous sequence - A.gossypii:421 C.intestinalis:433

Q74Z73              	100.00%		H2XS20              	100.00%
Bootstrap support for Q74Z73 as seed ortholog is 100%.
Bootstrap support for H2XS20 as seed ortholog is 100%.

Group of orthologs #96. Best score 619 bits
Score difference with first non-orthologous sequence - A.gossypii:356 C.intestinalis:338

Q752M8              	100.00%		F6RKM9              	100.00%
Bootstrap support for Q752M8 as seed ortholog is 100%.
Bootstrap support for F6RKM9 as seed ortholog is 100%.

Group of orthologs #97. Best score 618 bits
Score difference with first non-orthologous sequence - A.gossypii:618 C.intestinalis:618

Q75CE3              	100.00%		F6Z761              	100.00%
Bootstrap support for Q75CE3 as seed ortholog is 100%.
Bootstrap support for F6Z761 as seed ortholog is 100%.

Group of orthologs #98. Best score 616 bits
Score difference with first non-orthologous sequence - A.gossypii:524 C.intestinalis:523

Q752K7              	100.00%		F6X2D1              	100.00%
Bootstrap support for Q752K7 as seed ortholog is 100%.
Bootstrap support for F6X2D1 as seed ortholog is 100%.

Group of orthologs #99. Best score 614 bits
Score difference with first non-orthologous sequence - A.gossypii:614 C.intestinalis:455

Q750J4              	100.00%		F7BHP4              	100.00%
Bootstrap support for Q750J4 as seed ortholog is 100%.
Bootstrap support for F7BHP4 as seed ortholog is 100%.

Group of orthologs #100. Best score 613 bits
Score difference with first non-orthologous sequence - A.gossypii:613 C.intestinalis:613

Q755Q5              	100.00%		F6PYU7              	100.00%
Q758H0              	18.36%		
Bootstrap support for Q755Q5 as seed ortholog is 100%.
Bootstrap support for F6PYU7 as seed ortholog is 100%.

Group of orthologs #101. Best score 613 bits
Score difference with first non-orthologous sequence - A.gossypii:613 C.intestinalis:613

Q75A36              	100.00%		F6XMA0              	100.00%
Bootstrap support for Q75A36 as seed ortholog is 100%.
Bootstrap support for F6XMA0 as seed ortholog is 100%.

Group of orthologs #102. Best score 613 bits
Score difference with first non-orthologous sequence - A.gossypii:613 C.intestinalis:613

P62514              	100.00%		Q8HIM9              	100.00%
Bootstrap support for P62514 as seed ortholog is 100%.
Bootstrap support for Q8HIM9 as seed ortholog is 100%.

Group of orthologs #103. Best score 611 bits
Score difference with first non-orthologous sequence - A.gossypii:425 C.intestinalis:611

Q75FB3              	100.00%		F6WUJ1              	100.00%
Bootstrap support for Q75FB3 as seed ortholog is 100%.
Bootstrap support for F6WUJ1 as seed ortholog is 100%.

Group of orthologs #104. Best score 607 bits
Score difference with first non-orthologous sequence - A.gossypii:607 C.intestinalis:607

Q755G5              	100.00%		F6RHA1              	100.00%
Bootstrap support for Q755G5 as seed ortholog is 100%.
Bootstrap support for F6RHA1 as seed ortholog is 100%.

Group of orthologs #105. Best score 606 bits
Score difference with first non-orthologous sequence - A.gossypii:606 C.intestinalis:606

Q757M5              	100.00%		F6YTL6              	100.00%
Bootstrap support for Q757M5 as seed ortholog is 100%.
Bootstrap support for F6YTL6 as seed ortholog is 100%.

Group of orthologs #106. Best score 604 bits
Score difference with first non-orthologous sequence - A.gossypii:302 C.intestinalis:325

Q75AE3              	100.00%		F6THL0              	100.00%
Bootstrap support for Q75AE3 as seed ortholog is 100%.
Bootstrap support for F6THL0 as seed ortholog is 100%.

Group of orthologs #107. Best score 604 bits
Score difference with first non-orthologous sequence - A.gossypii:604 C.intestinalis:604

Q754B5              	100.00%		F6WTE3              	100.00%
Bootstrap support for Q754B5 as seed ortholog is 100%.
Bootstrap support for F6WTE3 as seed ortholog is 100%.

Group of orthologs #108. Best score 604 bits
Score difference with first non-orthologous sequence - A.gossypii:604 C.intestinalis:604

Q752K1              	100.00%		H2XQI5              	100.00%
Bootstrap support for Q752K1 as seed ortholog is 100%.
Bootstrap support for H2XQI5 as seed ortholog is 100%.

Group of orthologs #109. Best score 602 bits
Score difference with first non-orthologous sequence - A.gossypii:602 C.intestinalis:224

Q758X0              	100.00%		H2XYN5              	100.00%
Q750T7              	20.27%		
Bootstrap support for Q758X0 as seed ortholog is 100%.
Bootstrap support for H2XYN5 as seed ortholog is 99%.

Group of orthologs #110. Best score 600 bits
Score difference with first non-orthologous sequence - A.gossypii:600 C.intestinalis:600

Q757I5              	100.00%		F6PST3              	100.00%
Bootstrap support for Q757I5 as seed ortholog is 100%.
Bootstrap support for F6PST3 as seed ortholog is 100%.

Group of orthologs #111. Best score 597 bits
Score difference with first non-orthologous sequence - A.gossypii:597 C.intestinalis:597

Q75BD7              	100.00%		F6Q9P9              	100.00%
Bootstrap support for Q75BD7 as seed ortholog is 100%.
Bootstrap support for F6Q9P9 as seed ortholog is 100%.

Group of orthologs #112. Best score 597 bits
Score difference with first non-orthologous sequence - A.gossypii:597 C.intestinalis:597

Q753S2              	100.00%		F7A2X8              	100.00%
Bootstrap support for Q753S2 as seed ortholog is 100%.
Bootstrap support for F7A2X8 as seed ortholog is 100%.

Group of orthologs #113. Best score 596 bits
Score difference with first non-orthologous sequence - A.gossypii:596 C.intestinalis:69

Q75AI2              	100.00%		F7BGT4              	100.00%
Bootstrap support for Q75AI2 as seed ortholog is 100%.
Bootstrap support for F7BGT4 as seed ortholog is 56%.
Alternative seed ortholog is F6PPP8 (69 bits away from this cluster)

Group of orthologs #114. Best score 590 bits
Score difference with first non-orthologous sequence - A.gossypii:590 C.intestinalis:590

Q751L7              	100.00%		F6V5U6              	100.00%
Bootstrap support for Q751L7 as seed ortholog is 100%.
Bootstrap support for F6V5U6 as seed ortholog is 100%.

Group of orthologs #115. Best score 587 bits
Score difference with first non-orthologous sequence - A.gossypii:277 C.intestinalis:340

Q753F9              	100.00%		F6Z4G6              	100.00%
Bootstrap support for Q753F9 as seed ortholog is 100%.
Bootstrap support for F6Z4G6 as seed ortholog is 100%.

Group of orthologs #116. Best score 587 bits
Score difference with first non-orthologous sequence - A.gossypii:197 C.intestinalis:286

Q758Q0              	100.00%		H2Y3E7              	100.00%
Bootstrap support for Q758Q0 as seed ortholog is 99%.
Bootstrap support for H2Y3E7 as seed ortholog is 100%.

Group of orthologs #117. Best score 586 bits
Score difference with first non-orthologous sequence - A.gossypii:586 C.intestinalis:586

Q75EU2              	100.00%		F6U2M6              	100.00%
Bootstrap support for Q75EU2 as seed ortholog is 100%.
Bootstrap support for F6U2M6 as seed ortholog is 100%.

Group of orthologs #118. Best score 581 bits
Score difference with first non-orthologous sequence - A.gossypii:280 C.intestinalis:173

Q755N4              	100.00%		F6UHH9              	100.00%
Bootstrap support for Q755N4 as seed ortholog is 100%.
Bootstrap support for F6UHH9 as seed ortholog is 99%.

Group of orthologs #119. Best score 579 bits
Score difference with first non-orthologous sequence - A.gossypii:385 C.intestinalis:171

Q751N2              	100.00%		H2XQT6              	100.00%
Bootstrap support for Q751N2 as seed ortholog is 100%.
Bootstrap support for H2XQT6 as seed ortholog is 100%.

Group of orthologs #120. Best score 577 bits
Score difference with first non-orthologous sequence - A.gossypii:577 C.intestinalis:577

Q75DC5              	100.00%		F6YXI8              	100.00%
Bootstrap support for Q75DC5 as seed ortholog is 100%.
Bootstrap support for F6YXI8 as seed ortholog is 100%.

Group of orthologs #121. Best score 577 bits
Score difference with first non-orthologous sequence - A.gossypii:517 C.intestinalis:577

Q75AF7              	100.00%		F7AYB9              	100.00%
Bootstrap support for Q75AF7 as seed ortholog is 100%.
Bootstrap support for F7AYB9 as seed ortholog is 100%.

Group of orthologs #122. Best score 575 bits
Score difference with first non-orthologous sequence - A.gossypii:575 C.intestinalis:575

Q75F90              	100.00%		F6PMK8              	100.00%
Bootstrap support for Q75F90 as seed ortholog is 100%.
Bootstrap support for F6PMK8 as seed ortholog is 100%.

Group of orthologs #123. Best score 575 bits
Score difference with first non-orthologous sequence - A.gossypii:575 C.intestinalis:335

Q75EA4              	100.00%		F7AJ84              	100.00%
Bootstrap support for Q75EA4 as seed ortholog is 100%.
Bootstrap support for F7AJ84 as seed ortholog is 100%.

Group of orthologs #124. Best score 571 bits
Score difference with first non-orthologous sequence - A.gossypii:571 C.intestinalis:571

Q75EM2              	100.00%		F6VRH3              	100.00%
Bootstrap support for Q75EM2 as seed ortholog is 100%.
Bootstrap support for F6VRH3 as seed ortholog is 100%.

Group of orthologs #125. Best score 571 bits
Score difference with first non-orthologous sequence - A.gossypii:249 C.intestinalis:571

Q757S7              	100.00%		H2XXZ3              	100.00%
Bootstrap support for Q757S7 as seed ortholog is 100%.
Bootstrap support for H2XXZ3 as seed ortholog is 100%.

Group of orthologs #126. Best score 569 bits
Score difference with first non-orthologous sequence - A.gossypii:211 C.intestinalis:138

Q75EQ4              	100.00%		F6Y8H4              	100.00%
Q75DQ8              	16.10%		
Bootstrap support for Q75EQ4 as seed ortholog is 100%.
Bootstrap support for F6Y8H4 as seed ortholog is 99%.

Group of orthologs #127. Best score 569 bits
Score difference with first non-orthologous sequence - A.gossypii:396 C.intestinalis:388

Q75BS4              	100.00%		F7B898              	100.00%
Bootstrap support for Q75BS4 as seed ortholog is 100%.
Bootstrap support for F7B898 as seed ortholog is 100%.

Group of orthologs #128. Best score 566 bits
Score difference with first non-orthologous sequence - A.gossypii:566 C.intestinalis:352

Q75AE9              	100.00%		F6PL95              	100.00%
Q752E7              	20.82%		
Bootstrap support for Q75AE9 as seed ortholog is 100%.
Bootstrap support for F6PL95 as seed ortholog is 100%.

Group of orthologs #129. Best score 566 bits
Score difference with first non-orthologous sequence - A.gossypii:566 C.intestinalis:566

Q758Z0              	100.00%		F6QB99              	100.00%
Bootstrap support for Q758Z0 as seed ortholog is 100%.
Bootstrap support for F6QB99 as seed ortholog is 100%.

Group of orthologs #130. Best score 566 bits
Score difference with first non-orthologous sequence - A.gossypii:307 C.intestinalis:128

Q75B50              	100.00%		F6WI66              	100.00%
Bootstrap support for Q75B50 as seed ortholog is 100%.
Bootstrap support for F6WI66 as seed ortholog is 99%.

Group of orthologs #131. Best score 563 bits
Score difference with first non-orthologous sequence - A.gossypii:563 C.intestinalis:563

Q75DM3              	100.00%		F7BL51              	100.00%
Bootstrap support for Q75DM3 as seed ortholog is 100%.
Bootstrap support for F7BL51 as seed ortholog is 100%.

Group of orthologs #132. Best score 560 bits
Score difference with first non-orthologous sequence - A.gossypii:211 C.intestinalis:560

Q753V3              	100.00%		F6YBA5              	100.00%
Bootstrap support for Q753V3 as seed ortholog is 99%.
Bootstrap support for F6YBA5 as seed ortholog is 100%.

Group of orthologs #133. Best score 560 bits
Score difference with first non-orthologous sequence - A.gossypii:560 C.intestinalis:415

Q756K0              	100.00%		F6XKP0              	100.00%
Bootstrap support for Q756K0 as seed ortholog is 100%.
Bootstrap support for F6XKP0 as seed ortholog is 100%.

Group of orthologs #134. Best score 559 bits
Score difference with first non-orthologous sequence - A.gossypii:132 C.intestinalis:66

Q74Z12              	100.00%		F6YDI9              	100.00%
Bootstrap support for Q74Z12 as seed ortholog is 99%.
Bootstrap support for F6YDI9 as seed ortholog is 96%.

Group of orthologs #135. Best score 557 bits
Score difference with first non-orthologous sequence - A.gossypii:557 C.intestinalis:557

Q757N2              	100.00%		F6UQ90              	100.00%
Bootstrap support for Q757N2 as seed ortholog is 100%.
Bootstrap support for F6UQ90 as seed ortholog is 100%.

Group of orthologs #136. Best score 555 bits
Score difference with first non-orthologous sequence - A.gossypii:555 C.intestinalis:265

Q74ZC0              	100.00%		F6W785              	100.00%
Bootstrap support for Q74ZC0 as seed ortholog is 100%.
Bootstrap support for F6W785 as seed ortholog is 100%.

Group of orthologs #137. Best score 554 bits
Score difference with first non-orthologous sequence - A.gossypii:554 C.intestinalis:554

Q753N9              	100.00%		F6VGC6              	100.00%
Bootstrap support for Q753N9 as seed ortholog is 100%.
Bootstrap support for F6VGC6 as seed ortholog is 100%.

Group of orthologs #138. Best score 552 bits
Score difference with first non-orthologous sequence - A.gossypii:217 C.intestinalis:552

Q753Y4              	100.00%		F7AK99              	100.00%
Bootstrap support for Q753Y4 as seed ortholog is 100%.
Bootstrap support for F7AK99 as seed ortholog is 100%.

Group of orthologs #139. Best score 552 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.intestinalis:552

Q75ES5              	100.00%		H2XU13              	100.00%
Bootstrap support for Q75ES5 as seed ortholog is 99%.
Bootstrap support for H2XU13 as seed ortholog is 100%.

Group of orthologs #140. Best score 550 bits
Score difference with first non-orthologous sequence - A.gossypii:550 C.intestinalis:550

Q74ZK6              	100.00%		F6XTJ3              	100.00%
Bootstrap support for Q74ZK6 as seed ortholog is 100%.
Bootstrap support for F6XTJ3 as seed ortholog is 100%.

Group of orthologs #141. Best score 549 bits
Score difference with first non-orthologous sequence - A.gossypii:549 C.intestinalis:549

Q759U6              	100.00%		F6R356              	100.00%
Q759Z6              	17.65%		
Bootstrap support for Q759U6 as seed ortholog is 100%.
Bootstrap support for F6R356 as seed ortholog is 100%.

Group of orthologs #142. Best score 548 bits
Score difference with first non-orthologous sequence - A.gossypii:548 C.intestinalis:457

Q756H2              	100.00%		F6XZ93              	100.00%
Bootstrap support for Q756H2 as seed ortholog is 100%.
Bootstrap support for F6XZ93 as seed ortholog is 100%.

Group of orthologs #143. Best score 548 bits
Score difference with first non-orthologous sequence - A.gossypii:548 C.intestinalis:140

Q753U3              	100.00%		F7AXJ1              	100.00%
Bootstrap support for Q753U3 as seed ortholog is 100%.
Bootstrap support for F7AXJ1 as seed ortholog is 99%.

Group of orthologs #144. Best score 547 bits
Score difference with first non-orthologous sequence - A.gossypii:547 C.intestinalis:473

Q75F41              	100.00%		F6UWX3              	100.00%
Bootstrap support for Q75F41 as seed ortholog is 100%.
Bootstrap support for F6UWX3 as seed ortholog is 100%.

Group of orthologs #145. Best score 544 bits
Score difference with first non-orthologous sequence - A.gossypii:399 C.intestinalis:386

Q759L6              	100.00%		F6Z194              	100.00%
Bootstrap support for Q759L6 as seed ortholog is 100%.
Bootstrap support for F6Z194 as seed ortholog is 100%.

Group of orthologs #146. Best score 541 bits
Score difference with first non-orthologous sequence - A.gossypii:158 C.intestinalis:249

Q754A6              	100.00%		F6Y1K6              	100.00%
                    	       		F6Q5E4              	72.11%
Bootstrap support for Q754A6 as seed ortholog is 100%.
Bootstrap support for F6Y1K6 as seed ortholog is 100%.

Group of orthologs #147. Best score 540 bits
Score difference with first non-orthologous sequence - A.gossypii:540 C.intestinalis:540

Q753C2              	100.00%		F6T9M1              	100.00%
Bootstrap support for Q753C2 as seed ortholog is 100%.
Bootstrap support for F6T9M1 as seed ortholog is 100%.

Group of orthologs #148. Best score 537 bits
Score difference with first non-orthologous sequence - A.gossypii:537 C.intestinalis:488

Q75ET8              	100.00%		F6ZF70              	100.00%
Q757F2              	17.23%		F6QFH5              	16.52%
Bootstrap support for Q75ET8 as seed ortholog is 100%.
Bootstrap support for F6ZF70 as seed ortholog is 100%.

Group of orthologs #149. Best score 535 bits
Score difference with first non-orthologous sequence - A.gossypii:535 C.intestinalis:7

Q759E3              	100.00%		H2XJF1              	100.00%
Bootstrap support for Q759E3 as seed ortholog is 100%.
Bootstrap support for H2XJF1 as seed ortholog is 41%.
Alternative seed ortholog is F6UFC1 (7 bits away from this cluster)

Group of orthologs #150. Best score 534 bits
Score difference with first non-orthologous sequence - A.gossypii:534 C.intestinalis:534

Q759C0              	100.00%		F6SXA9              	100.00%
Bootstrap support for Q759C0 as seed ortholog is 100%.
Bootstrap support for F6SXA9 as seed ortholog is 100%.

Group of orthologs #151. Best score 532 bits
Score difference with first non-orthologous sequence - A.gossypii:532 C.intestinalis:138

Q757P4              	100.00%		F6TGH1              	100.00%
Bootstrap support for Q757P4 as seed ortholog is 100%.
Bootstrap support for F6TGH1 as seed ortholog is 99%.

Group of orthologs #152. Best score 531 bits
Score difference with first non-orthologous sequence - A.gossypii:531 C.intestinalis:387

Q752R1              	100.00%		F6WR85              	100.00%
Bootstrap support for Q752R1 as seed ortholog is 100%.
Bootstrap support for F6WR85 as seed ortholog is 100%.

Group of orthologs #153. Best score 531 bits
Score difference with first non-orthologous sequence - A.gossypii:531 C.intestinalis:403

Q751F3              	100.00%		F7B2M5              	100.00%
Bootstrap support for Q751F3 as seed ortholog is 100%.
Bootstrap support for F7B2M5 as seed ortholog is 100%.

Group of orthologs #154. Best score 530 bits
Score difference with first non-orthologous sequence - A.gossypii:530 C.intestinalis:530

Q759R7              	100.00%		F6YKX8              	100.00%
Bootstrap support for Q759R7 as seed ortholog is 100%.
Bootstrap support for F6YKX8 as seed ortholog is 100%.

Group of orthologs #155. Best score 527 bits
Score difference with first non-orthologous sequence - A.gossypii:270 C.intestinalis:527

Q74ZE0              	100.00%		F6S399              	100.00%
Bootstrap support for Q74ZE0 as seed ortholog is 99%.
Bootstrap support for F6S399 as seed ortholog is 100%.

Group of orthologs #156. Best score 526 bits
Score difference with first non-orthologous sequence - A.gossypii:526 C.intestinalis:526

Q75AF0              	100.00%		F6QH36              	100.00%
Bootstrap support for Q75AF0 as seed ortholog is 100%.
Bootstrap support for F6QH36 as seed ortholog is 100%.

Group of orthologs #157. Best score 525 bits
Score difference with first non-orthologous sequence - A.gossypii:525 C.intestinalis:525

Q756A7              	100.00%		F6QIX3              	100.00%
Bootstrap support for Q756A7 as seed ortholog is 100%.
Bootstrap support for F6QIX3 as seed ortholog is 100%.

Group of orthologs #158. Best score 525 bits
Score difference with first non-orthologous sequence - A.gossypii:525 C.intestinalis:169

Q758T5              	100.00%		F6V7V9              	100.00%
Bootstrap support for Q758T5 as seed ortholog is 100%.
Bootstrap support for F6V7V9 as seed ortholog is 99%.

Group of orthologs #159. Best score 524 bits
Score difference with first non-orthologous sequence - A.gossypii:524 C.intestinalis:524

Q751Y3              	100.00%		F6PNS6              	100.00%
Bootstrap support for Q751Y3 as seed ortholog is 100%.
Bootstrap support for F6PNS6 as seed ortholog is 100%.

Group of orthologs #160. Best score 522 bits
Score difference with first non-orthologous sequence - A.gossypii:522 C.intestinalis:522

Q753S1              	100.00%		H2XKW2              	100.00%
Bootstrap support for Q753S1 as seed ortholog is 100%.
Bootstrap support for H2XKW2 as seed ortholog is 100%.

Group of orthologs #161. Best score 522 bits
Score difference with first non-orthologous sequence - A.gossypii:522 C.intestinalis:522

Q75DP6              	100.00%		F6ZDC7              	100.00%
Bootstrap support for Q75DP6 as seed ortholog is 100%.
Bootstrap support for F6ZDC7 as seed ortholog is 100%.

Group of orthologs #162. Best score 520 bits
Score difference with first non-orthologous sequence - A.gossypii:137 C.intestinalis:99

Q75F55              	100.00%		F6YUT1              	100.00%
Bootstrap support for Q75F55 as seed ortholog is 98%.
Bootstrap support for F6YUT1 as seed ortholog is 94%.

Group of orthologs #163. Best score 520 bits
Score difference with first non-orthologous sequence - A.gossypii:520 C.intestinalis:110

Q75E20              	100.00%		H2XPB4              	100.00%
Bootstrap support for Q75E20 as seed ortholog is 100%.
Bootstrap support for H2XPB4 as seed ortholog is 99%.

Group of orthologs #164. Best score 519 bits
Score difference with first non-orthologous sequence - A.gossypii:373 C.intestinalis:306

Q75DA4              	100.00%		F6VVR6              	100.00%
Bootstrap support for Q75DA4 as seed ortholog is 100%.
Bootstrap support for F6VVR6 as seed ortholog is 100%.

Group of orthologs #165. Best score 516 bits
Score difference with first non-orthologous sequence - A.gossypii:516 C.intestinalis:318

Q750Q5              	100.00%		H2XJF2              	100.00%
Bootstrap support for Q750Q5 as seed ortholog is 100%.
Bootstrap support for H2XJF2 as seed ortholog is 100%.

Group of orthologs #166. Best score 515 bits
Score difference with first non-orthologous sequence - A.gossypii:515 C.intestinalis:515

Q757X5              	100.00%		H2Y1C4              	100.00%
Bootstrap support for Q757X5 as seed ortholog is 100%.
Bootstrap support for H2Y1C4 as seed ortholog is 100%.

Group of orthologs #167. Best score 513 bits
Score difference with first non-orthologous sequence - A.gossypii:324 C.intestinalis:317

Q75BL8              	100.00%		F6TMJ9              	100.00%
Bootstrap support for Q75BL8 as seed ortholog is 100%.
Bootstrap support for F6TMJ9 as seed ortholog is 100%.

Group of orthologs #168. Best score 510 bits
Score difference with first non-orthologous sequence - A.gossypii:510 C.intestinalis:510

Q75DL8              	100.00%		F6VF77              	100.00%
Bootstrap support for Q75DL8 as seed ortholog is 100%.
Bootstrap support for F6VF77 as seed ortholog is 100%.

Group of orthologs #169. Best score 509 bits
Score difference with first non-orthologous sequence - A.gossypii:285 C.intestinalis:189

Q750T4              	100.00%		F6X7X8              	100.00%
Bootstrap support for Q750T4 as seed ortholog is 100%.
Bootstrap support for F6X7X8 as seed ortholog is 100%.

Group of orthologs #170. Best score 505 bits
Score difference with first non-orthologous sequence - A.gossypii:505 C.intestinalis:356

Q750G1              	100.00%		F6YGU8              	100.00%
                    	       		F6RCK1              	18.54%
Bootstrap support for Q750G1 as seed ortholog is 100%.
Bootstrap support for F6YGU8 as seed ortholog is 100%.

Group of orthologs #171. Best score 504 bits
Score difference with first non-orthologous sequence - A.gossypii:295 C.intestinalis:504

Q752H7              	100.00%		F6ZM86              	100.00%
Bootstrap support for Q752H7 as seed ortholog is 100%.
Bootstrap support for F6ZM86 as seed ortholog is 100%.

Group of orthologs #172. Best score 500 bits
Score difference with first non-orthologous sequence - A.gossypii:310 C.intestinalis:304

Q755W0              	100.00%		F6XF93              	100.00%
Bootstrap support for Q755W0 as seed ortholog is 100%.
Bootstrap support for F6XF93 as seed ortholog is 100%.

Group of orthologs #173. Best score 498 bits
Score difference with first non-orthologous sequence - A.gossypii:498 C.intestinalis:498

Q753Y9              	100.00%		F6YIL9              	100.00%
Bootstrap support for Q753Y9 as seed ortholog is 100%.
Bootstrap support for F6YIL9 as seed ortholog is 100%.

Group of orthologs #174. Best score 498 bits
Score difference with first non-orthologous sequence - A.gossypii:498 C.intestinalis:498

Q75CR3              	100.00%		H2XXL7              	100.00%
Bootstrap support for Q75CR3 as seed ortholog is 100%.
Bootstrap support for H2XXL7 as seed ortholog is 100%.

Group of orthologs #175. Best score 497 bits
Score difference with first non-orthologous sequence - A.gossypii:258 C.intestinalis:220

Q754T2              	100.00%		F6W1I6              	100.00%
Bootstrap support for Q754T2 as seed ortholog is 99%.
Bootstrap support for F6W1I6 as seed ortholog is 99%.

Group of orthologs #176. Best score 497 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.intestinalis:84

Q75A21              	100.00%		F6VAS2              	100.00%
Bootstrap support for Q75A21 as seed ortholog is 100%.
Bootstrap support for F6VAS2 as seed ortholog is 99%.

Group of orthologs #177. Best score 496 bits
Score difference with first non-orthologous sequence - A.gossypii:496 C.intestinalis:496

Q75BQ6              	100.00%		H2XJF4              	100.00%
Q758F0              	15.88%		
Bootstrap support for Q75BQ6 as seed ortholog is 100%.
Bootstrap support for H2XJF4 as seed ortholog is 100%.

Group of orthologs #178. Best score 496 bits
Score difference with first non-orthologous sequence - A.gossypii:496 C.intestinalis:496

Q750R3              	100.00%		F6Q0U4              	100.00%
Bootstrap support for Q750R3 as seed ortholog is 100%.
Bootstrap support for F6Q0U4 as seed ortholog is 100%.

Group of orthologs #179. Best score 495 bits
Score difference with first non-orthologous sequence - A.gossypii:495 C.intestinalis:495

Q758U9              	100.00%		F6RNS7              	100.00%
Bootstrap support for Q758U9 as seed ortholog is 100%.
Bootstrap support for F6RNS7 as seed ortholog is 100%.

Group of orthologs #180. Best score 495 bits
Score difference with first non-orthologous sequence - A.gossypii:495 C.intestinalis:495

Q756R6              	100.00%		F6XJU3              	100.00%
Bootstrap support for Q756R6 as seed ortholog is 100%.
Bootstrap support for F6XJU3 as seed ortholog is 100%.

Group of orthologs #181. Best score 495 bits
Score difference with first non-orthologous sequence - A.gossypii:495 C.intestinalis:495

Q757H0              	100.00%		F6XK10              	100.00%
Bootstrap support for Q757H0 as seed ortholog is 100%.
Bootstrap support for F6XK10 as seed ortholog is 100%.

Group of orthologs #182. Best score 491 bits
Score difference with first non-orthologous sequence - A.gossypii:491 C.intestinalis:491

Q757Q0              	100.00%		F6YND1              	100.00%
Bootstrap support for Q757Q0 as seed ortholog is 100%.
Bootstrap support for F6YND1 as seed ortholog is 100%.

Group of orthologs #183. Best score 490 bits
Score difference with first non-orthologous sequence - A.gossypii:490 C.intestinalis:490

Q74ZG2              	100.00%		F6QIK7              	100.00%
Bootstrap support for Q74ZG2 as seed ortholog is 100%.
Bootstrap support for F6QIK7 as seed ortholog is 100%.

Group of orthologs #184. Best score 489 bits
Score difference with first non-orthologous sequence - A.gossypii:489 C.intestinalis:400

Q75CD0              	100.00%		F6W0L1              	100.00%
Bootstrap support for Q75CD0 as seed ortholog is 100%.
Bootstrap support for F6W0L1 as seed ortholog is 100%.

Group of orthologs #185. Best score 487 bits
Score difference with first non-orthologous sequence - A.gossypii:487 C.intestinalis:487

Q754K1              	100.00%		F6WA81              	100.00%
Bootstrap support for Q754K1 as seed ortholog is 100%.
Bootstrap support for F6WA81 as seed ortholog is 100%.

Group of orthologs #186. Best score 486 bits
Score difference with first non-orthologous sequence - A.gossypii:486 C.intestinalis:486

Q757L9              	100.00%		F6PYH8              	100.00%
Bootstrap support for Q757L9 as seed ortholog is 100%.
Bootstrap support for F6PYH8 as seed ortholog is 100%.

Group of orthologs #187. Best score 486 bits
Score difference with first non-orthologous sequence - A.gossypii:284 C.intestinalis:486

Q757U8              	100.00%		F6RIY5              	100.00%
Bootstrap support for Q757U8 as seed ortholog is 100%.
Bootstrap support for F6RIY5 as seed ortholog is 100%.

Group of orthologs #188. Best score 483 bits
Score difference with first non-orthologous sequence - A.gossypii:483 C.intestinalis:483

Q759A9              	100.00%		F6UI47              	100.00%
Bootstrap support for Q759A9 as seed ortholog is 100%.
Bootstrap support for F6UI47 as seed ortholog is 100%.

Group of orthologs #189. Best score 482 bits
Score difference with first non-orthologous sequence - A.gossypii:482 C.intestinalis:482

Q75C71              	100.00%		F6ZC49              	100.00%
Bootstrap support for Q75C71 as seed ortholog is 100%.
Bootstrap support for F6ZC49 as seed ortholog is 100%.

Group of orthologs #190. Best score 481 bits
Score difference with first non-orthologous sequence - A.gossypii:310 C.intestinalis:316

Q75C76              	100.00%		H2XJZ4              	100.00%
Bootstrap support for Q75C76 as seed ortholog is 100%.
Bootstrap support for H2XJZ4 as seed ortholog is 100%.

Group of orthologs #191. Best score 479 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.intestinalis:112

Q75CG3              	100.00%		F6W5P6              	100.00%
Q758W1              	29.93%		F6W6R6              	73.56%
                    	       		H2XSE7              	22.72%
                    	       		F6Z7V5              	16.39%
Bootstrap support for Q75CG3 as seed ortholog is 98%.
Bootstrap support for F6W5P6 as seed ortholog is 99%.

Group of orthologs #192. Best score 478 bits
Score difference with first non-orthologous sequence - A.gossypii:243 C.intestinalis:167

Q75AD4              	100.00%		F6VEU9              	100.00%
Bootstrap support for Q75AD4 as seed ortholog is 100%.
Bootstrap support for F6VEU9 as seed ortholog is 99%.

Group of orthologs #193. Best score 477 bits
Score difference with first non-orthologous sequence - A.gossypii:262 C.intestinalis:321

Q74ZT2              	100.00%		F6SI15              	100.00%
Bootstrap support for Q74ZT2 as seed ortholog is 99%.
Bootstrap support for F6SI15 as seed ortholog is 100%.

Group of orthologs #194. Best score 477 bits
Score difference with first non-orthologous sequence - A.gossypii:477 C.intestinalis:477

Q753L7              	100.00%		F6ZBB5              	100.00%
Bootstrap support for Q753L7 as seed ortholog is 100%.
Bootstrap support for F6ZBB5 as seed ortholog is 100%.

Group of orthologs #195. Best score 473 bits
Score difference with first non-orthologous sequence - A.gossypii:473 C.intestinalis:473

Q75BQ2              	100.00%		F7B580              	100.00%
Bootstrap support for Q75BQ2 as seed ortholog is 100%.
Bootstrap support for F7B580 as seed ortholog is 100%.

Group of orthologs #196. Best score 472 bits
Score difference with first non-orthologous sequence - A.gossypii:472 C.intestinalis:472

Q759A5              	100.00%		F6W1L1              	100.00%
Bootstrap support for Q759A5 as seed ortholog is 100%.
Bootstrap support for F6W1L1 as seed ortholog is 100%.

Group of orthologs #197. Best score 468 bits
Score difference with first non-orthologous sequence - A.gossypii:363 C.intestinalis:468

Q75C45              	100.00%		F6UXR3              	100.00%
Bootstrap support for Q75C45 as seed ortholog is 100%.
Bootstrap support for F6UXR3 as seed ortholog is 100%.

Group of orthologs #198. Best score 465 bits
Score difference with first non-orthologous sequence - A.gossypii:465 C.intestinalis:465

Q753I4              	100.00%		F6U609              	100.00%
Bootstrap support for Q753I4 as seed ortholog is 100%.
Bootstrap support for F6U609 as seed ortholog is 100%.

Group of orthologs #199. Best score 465 bits
Score difference with first non-orthologous sequence - A.gossypii:465 C.intestinalis:465

Q75BJ2              	100.00%		F6T957              	100.00%
Bootstrap support for Q75BJ2 as seed ortholog is 100%.
Bootstrap support for F6T957 as seed ortholog is 100%.

Group of orthologs #200. Best score 465 bits
Score difference with first non-orthologous sequence - A.gossypii:465 C.intestinalis:380

Q75CR7              	100.00%		F6X0I3              	100.00%
Bootstrap support for Q75CR7 as seed ortholog is 100%.
Bootstrap support for F6X0I3 as seed ortholog is 100%.

Group of orthologs #201. Best score 465 bits
Score difference with first non-orthologous sequence - A.gossypii:465 C.intestinalis:465

Q759T9              	100.00%		F6Z3I0              	100.00%
Bootstrap support for Q759T9 as seed ortholog is 100%.
Bootstrap support for F6Z3I0 as seed ortholog is 100%.

Group of orthologs #202. Best score 459 bits
Score difference with first non-orthologous sequence - A.gossypii:459 C.intestinalis:459

Q75E77              	100.00%		F7AX62              	100.00%
Bootstrap support for Q75E77 as seed ortholog is 100%.
Bootstrap support for F7AX62 as seed ortholog is 100%.

Group of orthologs #203. Best score 457 bits
Score difference with first non-orthologous sequence - A.gossypii:457 C.intestinalis:457

Q752Q7              	100.00%		F6UF05              	100.00%
Bootstrap support for Q752Q7 as seed ortholog is 100%.
Bootstrap support for F6UF05 as seed ortholog is 100%.

Group of orthologs #204. Best score 457 bits
Score difference with first non-orthologous sequence - A.gossypii:457 C.intestinalis:457

Q755Z3              	100.00%		F6TKV3              	100.00%
Bootstrap support for Q755Z3 as seed ortholog is 100%.
Bootstrap support for F6TKV3 as seed ortholog is 100%.

Group of orthologs #205. Best score 456 bits
Score difference with first non-orthologous sequence - A.gossypii:151 C.intestinalis:456

Q753X2              	100.00%		H2XLC2              	100.00%
Bootstrap support for Q753X2 as seed ortholog is 99%.
Bootstrap support for H2XLC2 as seed ortholog is 100%.

Group of orthologs #206. Best score 455 bits
Score difference with first non-orthologous sequence - A.gossypii:455 C.intestinalis:455

Q75F64              	100.00%		F6TAK8              	100.00%
Bootstrap support for Q75F64 as seed ortholog is 100%.
Bootstrap support for F6TAK8 as seed ortholog is 100%.

Group of orthologs #207. Best score 455 bits
Score difference with first non-orthologous sequence - A.gossypii:455 C.intestinalis:455

Q75EN8              	100.00%		F6VBU5              	100.00%
Bootstrap support for Q75EN8 as seed ortholog is 100%.
Bootstrap support for F6VBU5 as seed ortholog is 100%.

Group of orthologs #208. Best score 455 bits
Score difference with first non-orthologous sequence - A.gossypii:455 C.intestinalis:455

Q75B31              	100.00%		H2XZT6              	100.00%
Bootstrap support for Q75B31 as seed ortholog is 100%.
Bootstrap support for H2XZT6 as seed ortholog is 100%.

Group of orthologs #209. Best score 450 bits
Score difference with first non-orthologous sequence - A.gossypii:450 C.intestinalis:450

Q751N9              	100.00%		F6XC92              	100.00%
Bootstrap support for Q751N9 as seed ortholog is 100%.
Bootstrap support for F6XC92 as seed ortholog is 100%.

Group of orthologs #210. Best score 449 bits
Score difference with first non-orthologous sequence - A.gossypii:449 C.intestinalis:449

Q757M8              	100.00%		F6ZN98              	100.00%
Bootstrap support for Q757M8 as seed ortholog is 100%.
Bootstrap support for F6ZN98 as seed ortholog is 100%.

Group of orthologs #211. Best score 448 bits
Score difference with first non-orthologous sequence - A.gossypii:336 C.intestinalis:324

Q75EZ9              	100.00%		F6YDF4              	100.00%
Bootstrap support for Q75EZ9 as seed ortholog is 100%.
Bootstrap support for F6YDF4 as seed ortholog is 100%.

Group of orthologs #212. Best score 447 bits
Score difference with first non-orthologous sequence - A.gossypii:447 C.intestinalis:285

Q74ZS1              	100.00%		H2XVK2              	100.00%
                    	       		H2XQD5              	57.44%
Bootstrap support for Q74ZS1 as seed ortholog is 100%.
Bootstrap support for H2XVK2 as seed ortholog is 100%.

Group of orthologs #213. Best score 447 bits
Score difference with first non-orthologous sequence - A.gossypii:447 C.intestinalis:184

Q74ZK4              	100.00%		F7AVB6              	100.00%
Bootstrap support for Q74ZK4 as seed ortholog is 100%.
Bootstrap support for F7AVB6 as seed ortholog is 99%.

Group of orthologs #214. Best score 446 bits
Score difference with first non-orthologous sequence - A.gossypii:178 C.intestinalis:95

Q754N7              	100.00%		F6Q0M2              	100.00%
Bootstrap support for Q754N7 as seed ortholog is 99%.
Bootstrap support for F6Q0M2 as seed ortholog is 98%.

Group of orthologs #215. Best score 446 bits
Score difference with first non-orthologous sequence - A.gossypii:446 C.intestinalis:446

Q75AW5              	100.00%		F6YQ60              	100.00%
Bootstrap support for Q75AW5 as seed ortholog is 100%.
Bootstrap support for F6YQ60 as seed ortholog is 100%.

Group of orthologs #216. Best score 446 bits
Score difference with first non-orthologous sequence - A.gossypii:338 C.intestinalis:360

Q756W4              	100.00%		F7AMH0              	100.00%
Bootstrap support for Q756W4 as seed ortholog is 100%.
Bootstrap support for F7AMH0 as seed ortholog is 100%.

Group of orthologs #217. Best score 445 bits
Score difference with first non-orthologous sequence - A.gossypii:445 C.intestinalis:445

Q754I8              	100.00%		F6XH38              	100.00%
                    	       		F6ZGX7              	24.83%
                    	       		F6ZGZ0              	23.08%
Bootstrap support for Q754I8 as seed ortholog is 100%.
Bootstrap support for F6XH38 as seed ortholog is 100%.

Group of orthologs #218. Best score 445 bits
Score difference with first non-orthologous sequence - A.gossypii:445 C.intestinalis:445

Q751P6              	100.00%		F6YGJ7              	100.00%
Bootstrap support for Q751P6 as seed ortholog is 100%.
Bootstrap support for F6YGJ7 as seed ortholog is 100%.

Group of orthologs #219. Best score 445 bits
Score difference with first non-orthologous sequence - A.gossypii:445 C.intestinalis:445

Q752V5              	100.00%		F7A8S2              	100.00%
Bootstrap support for Q752V5 as seed ortholog is 100%.
Bootstrap support for F7A8S2 as seed ortholog is 100%.

Group of orthologs #220. Best score 444 bits
Score difference with first non-orthologous sequence - A.gossypii:444 C.intestinalis:444

Q75CV3              	100.00%		F6RMU1              	100.00%
Bootstrap support for Q75CV3 as seed ortholog is 100%.
Bootstrap support for F6RMU1 as seed ortholog is 100%.

Group of orthologs #221. Best score 443 bits
Score difference with first non-orthologous sequence - A.gossypii:443 C.intestinalis:443

Q756G8              	100.00%		F6TZ29              	100.00%
Bootstrap support for Q756G8 as seed ortholog is 100%.
Bootstrap support for F6TZ29 as seed ortholog is 100%.

Group of orthologs #222. Best score 443 bits
Score difference with first non-orthologous sequence - A.gossypii:443 C.intestinalis:443

Q755L3              	100.00%		F6UF57              	100.00%
Bootstrap support for Q755L3 as seed ortholog is 100%.
Bootstrap support for F6UF57 as seed ortholog is 100%.

Group of orthologs #223. Best score 441 bits
Score difference with first non-orthologous sequence - A.gossypii:382 C.intestinalis:289

Q755B6              	100.00%		F6SDI7              	100.00%
                    	       		F6VHP9              	7.08%
                    	       		F6W3R8              	7.08%
Bootstrap support for Q755B6 as seed ortholog is 100%.
Bootstrap support for F6SDI7 as seed ortholog is 100%.

Group of orthologs #224. Best score 441 bits
Score difference with first non-orthologous sequence - A.gossypii:441 C.intestinalis:441

Q753X7              	100.00%		F6UW46              	100.00%
Bootstrap support for Q753X7 as seed ortholog is 100%.
Bootstrap support for F6UW46 as seed ortholog is 100%.

Group of orthologs #225. Best score 441 bits
Score difference with first non-orthologous sequence - A.gossypii:441 C.intestinalis:441

Q75BT4              	100.00%		F6ZY44              	100.00%
Bootstrap support for Q75BT4 as seed ortholog is 100%.
Bootstrap support for F6ZY44 as seed ortholog is 100%.

Group of orthologs #226. Best score 439 bits
Score difference with first non-orthologous sequence - A.gossypii:439 C.intestinalis:439

Q750X3              	100.00%		F6UE02              	100.00%
                    	       		F6QSK8              	100.00%
Bootstrap support for Q750X3 as seed ortholog is 100%.
Bootstrap support for F6UE02 as seed ortholog is 100%.
Bootstrap support for F6QSK8 as seed ortholog is 100%.

Group of orthologs #227. Best score 438 bits
Score difference with first non-orthologous sequence - A.gossypii:438 C.intestinalis:438

Q755C2              	100.00%		F6V9G2              	100.00%
Bootstrap support for Q755C2 as seed ortholog is 100%.
Bootstrap support for F6V9G2 as seed ortholog is 100%.

Group of orthologs #228. Best score 437 bits
Score difference with first non-orthologous sequence - A.gossypii:197 C.intestinalis:173

Q757K5              	100.00%		F6WBI7              	100.00%
                    	       		F6WXA3              	56.12%
Bootstrap support for Q757K5 as seed ortholog is 100%.
Bootstrap support for F6WBI7 as seed ortholog is 100%.

Group of orthologs #229. Best score 436 bits
Score difference with first non-orthologous sequence - A.gossypii:241 C.intestinalis:217

Q752Y9              	100.00%		F6WVU8              	100.00%
                    	       		F6S2T0              	33.64%
                    	       		F6U3N6              	30.73%
                    	       		F6U4J4              	25.63%
                    	       		F6S2J4              	21.63%
                    	       		F6RZC1              	18.10%
Bootstrap support for Q752Y9 as seed ortholog is 99%.
Bootstrap support for F6WVU8 as seed ortholog is 100%.

Group of orthologs #230. Best score 434 bits
Score difference with first non-orthologous sequence - A.gossypii:194 C.intestinalis:174

Q74ZJ0              	100.00%		F6U113              	100.00%
Bootstrap support for Q74ZJ0 as seed ortholog is 99%.
Bootstrap support for F6U113 as seed ortholog is 99%.

Group of orthologs #231. Best score 433 bits
Score difference with first non-orthologous sequence - A.gossypii:433 C.intestinalis:433

Q757G6              	100.00%		F6RK88              	100.00%
Bootstrap support for Q757G6 as seed ortholog is 100%.
Bootstrap support for F6RK88 as seed ortholog is 100%.

Group of orthologs #232. Best score 433 bits
Score difference with first non-orthologous sequence - A.gossypii:433 C.intestinalis:433

Q756G7              	100.00%		F6WRF3              	100.00%
Bootstrap support for Q756G7 as seed ortholog is 100%.
Bootstrap support for F6WRF3 as seed ortholog is 100%.

Group of orthologs #233. Best score 430 bits
Score difference with first non-orthologous sequence - A.gossypii:26 C.intestinalis:243

Q75AM1              	100.00%		F6ZFK4              	100.00%
                    	       		H2XJH1              	20.67%
Bootstrap support for Q75AM1 as seed ortholog is 72%.
Alternative seed ortholog is Q755Z2 (26 bits away from this cluster)
Bootstrap support for F6ZFK4 as seed ortholog is 99%.

Group of orthologs #234. Best score 429 bits
Score difference with first non-orthologous sequence - A.gossypii:429 C.intestinalis:429

Q756Z0              	100.00%		F6RNR5              	100.00%
Bootstrap support for Q756Z0 as seed ortholog is 100%.
Bootstrap support for F6RNR5 as seed ortholog is 100%.

Group of orthologs #235. Best score 425 bits
Score difference with first non-orthologous sequence - A.gossypii:425 C.intestinalis:425

Q74ZX3              	100.00%		F7AQA9              	100.00%
Bootstrap support for Q74ZX3 as seed ortholog is 100%.
Bootstrap support for F7AQA9 as seed ortholog is 100%.

Group of orthologs #236. Best score 425 bits
Score difference with first non-orthologous sequence - A.gossypii:252 C.intestinalis:275

Q756Z1              	100.00%		F6Z7L9              	100.00%
Bootstrap support for Q756Z1 as seed ortholog is 100%.
Bootstrap support for F6Z7L9 as seed ortholog is 100%.

Group of orthologs #237. Best score 425 bits
Score difference with first non-orthologous sequence - A.gossypii:425 C.intestinalis:425

Q757D1              	100.00%		H2XPG3              	100.00%
Bootstrap support for Q757D1 as seed ortholog is 100%.
Bootstrap support for H2XPG3 as seed ortholog is 100%.

Group of orthologs #238. Best score 425 bits
Score difference with first non-orthologous sequence - A.gossypii:425 C.intestinalis:425

Q751U1              	100.00%		H2XWZ3              	100.00%
Bootstrap support for Q751U1 as seed ortholog is 100%.
Bootstrap support for H2XWZ3 as seed ortholog is 100%.

Group of orthologs #239. Best score 423 bits
Score difference with first non-orthologous sequence - A.gossypii:207 C.intestinalis:221

Q75EW9              	100.00%		F7AA42              	100.00%
Bootstrap support for Q75EW9 as seed ortholog is 100%.
Bootstrap support for F7AA42 as seed ortholog is 100%.

Group of orthologs #240. Best score 421 bits
Score difference with first non-orthologous sequence - A.gossypii:332 C.intestinalis:421

Q755U7              	100.00%		F6XQD4              	100.00%
Bootstrap support for Q755U7 as seed ortholog is 100%.
Bootstrap support for F6XQD4 as seed ortholog is 100%.

Group of orthologs #241. Best score 421 bits
Score difference with first non-orthologous sequence - A.gossypii:270 C.intestinalis:255

Q74ZC1              	100.00%		F7B7G6              	100.00%
Bootstrap support for Q74ZC1 as seed ortholog is 100%.
Bootstrap support for F7B7G6 as seed ortholog is 100%.

Group of orthologs #242. Best score 421 bits
Score difference with first non-orthologous sequence - A.gossypii:421 C.intestinalis:421

Q75DB4              	100.00%		F7BBD1              	100.00%
Bootstrap support for Q75DB4 as seed ortholog is 100%.
Bootstrap support for F7BBD1 as seed ortholog is 100%.

Group of orthologs #243. Best score 420 bits
Score difference with first non-orthologous sequence - A.gossypii:301 C.intestinalis:140

Q758J2              	100.00%		F6RCR9              	100.00%
Bootstrap support for Q758J2 as seed ortholog is 100%.
Bootstrap support for F6RCR9 as seed ortholog is 99%.

Group of orthologs #244. Best score 419 bits
Score difference with first non-orthologous sequence - A.gossypii:419 C.intestinalis:18

Q75BT0              	100.00%		F6QIR4              	100.00%
Bootstrap support for Q75BT0 as seed ortholog is 100%.
Bootstrap support for F6QIR4 as seed ortholog is 59%.
Alternative seed ortholog is F6XQ16 (18 bits away from this cluster)

Group of orthologs #245. Best score 418 bits
Score difference with first non-orthologous sequence - A.gossypii:29 C.intestinalis:302

Q75AM5              	100.00%		Q8T3S5              	100.00%
Bootstrap support for Q75AM5 as seed ortholog is 20%.
Alternative seed ortholog is Q759R9 (29 bits away from this cluster)
Bootstrap support for Q8T3S5 as seed ortholog is 100%.

Group of orthologs #246. Best score 416 bits
Score difference with first non-orthologous sequence - A.gossypii:416 C.intestinalis:416

Q751A1              	100.00%		F6X4W9              	100.00%
Bootstrap support for Q751A1 as seed ortholog is 100%.
Bootstrap support for F6X4W9 as seed ortholog is 100%.

Group of orthologs #247. Best score 415 bits
Score difference with first non-orthologous sequence - A.gossypii:415 C.intestinalis:415

Q757W9              	100.00%		F6ZZJ8              	100.00%
Bootstrap support for Q757W9 as seed ortholog is 100%.
Bootstrap support for F6ZZJ8 as seed ortholog is 100%.

Group of orthologs #248. Best score 415 bits
Score difference with first non-orthologous sequence - A.gossypii:415 C.intestinalis:214

Q75EB0              	100.00%		F7BBJ9              	100.00%
Bootstrap support for Q75EB0 as seed ortholog is 100%.
Bootstrap support for F7BBJ9 as seed ortholog is 100%.

Group of orthologs #249. Best score 415 bits
Score difference with first non-orthologous sequence - A.gossypii:415 C.intestinalis:415

Q758R9              	100.00%		H2XQE4              	100.00%
Bootstrap support for Q758R9 as seed ortholog is 100%.
Bootstrap support for H2XQE4 as seed ortholog is 100%.

Group of orthologs #250. Best score 414 bits
Score difference with first non-orthologous sequence - A.gossypii:414 C.intestinalis:414

Q75F62              	100.00%		F6QI37              	100.00%
Bootstrap support for Q75F62 as seed ortholog is 100%.
Bootstrap support for F6QI37 as seed ortholog is 100%.

Group of orthologs #251. Best score 414 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:414

Q75EA7              	100.00%		F6RK00              	100.00%
Bootstrap support for Q75EA7 as seed ortholog is 88%.
Bootstrap support for F6RK00 as seed ortholog is 100%.

Group of orthologs #252. Best score 414 bits
Score difference with first non-orthologous sequence - A.gossypii:275 C.intestinalis:414

Q75DW1              	100.00%		H2XUE4              	100.00%
Bootstrap support for Q75DW1 as seed ortholog is 100%.
Bootstrap support for H2XUE4 as seed ortholog is 100%.

Group of orthologs #253. Best score 413 bits
Score difference with first non-orthologous sequence - A.gossypii:413 C.intestinalis:413

Q75BC3              	100.00%		F6ZVE7              	100.00%
Bootstrap support for Q75BC3 as seed ortholog is 100%.
Bootstrap support for F6ZVE7 as seed ortholog is 100%.

Group of orthologs #254. Best score 412 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:412

Q75BI5              	100.00%		F6UJS3              	100.00%
Bootstrap support for Q75BI5 as seed ortholog is 96%.
Bootstrap support for F6UJS3 as seed ortholog is 100%.

Group of orthologs #255. Best score 411 bits
Score difference with first non-orthologous sequence - A.gossypii:411 C.intestinalis:411

Q75AZ9              	100.00%		F6VZF6              	100.00%
Bootstrap support for Q75AZ9 as seed ortholog is 100%.
Bootstrap support for F6VZF6 as seed ortholog is 100%.

Group of orthologs #256. Best score 410 bits
Score difference with first non-orthologous sequence - A.gossypii:39 C.intestinalis:6

Q756Q2              	100.00%		H2XK85              	100.00%
                    	       		H2XLI5              	68.83%
Bootstrap support for Q756Q2 as seed ortholog is 90%.
Bootstrap support for H2XK85 as seed ortholog is 55%.
Alternative seed ortholog is F7B991 (6 bits away from this cluster)

Group of orthologs #257. Best score 410 bits
Score difference with first non-orthologous sequence - A.gossypii:410 C.intestinalis:410

Q75A67              	100.00%		F6Z6L6              	100.00%
Bootstrap support for Q75A67 as seed ortholog is 100%.
Bootstrap support for F6Z6L6 as seed ortholog is 100%.

Group of orthologs #258. Best score 409 bits
Score difference with first non-orthologous sequence - A.gossypii:409 C.intestinalis:236

Q75CI8              	100.00%		F6SG33              	100.00%
Bootstrap support for Q75CI8 as seed ortholog is 100%.
Bootstrap support for F6SG33 as seed ortholog is 99%.

Group of orthologs #259. Best score 409 bits
Score difference with first non-orthologous sequence - A.gossypii:409 C.intestinalis:409

Q75CE5              	100.00%		F6ZP25              	100.00%
Bootstrap support for Q75CE5 as seed ortholog is 100%.
Bootstrap support for F6ZP25 as seed ortholog is 100%.

Group of orthologs #260. Best score 408 bits
Score difference with first non-orthologous sequence - A.gossypii:408 C.intestinalis:408

Q74Z01              	100.00%		F6YEG0              	100.00%
Q74Z02              	61.72%		
Bootstrap support for Q74Z01 as seed ortholog is 100%.
Bootstrap support for F6YEG0 as seed ortholog is 100%.

Group of orthologs #261. Best score 408 bits
Score difference with first non-orthologous sequence - A.gossypii:259 C.intestinalis:120

Q75AG7              	100.00%		F6PW28              	100.00%
Bootstrap support for Q75AG7 as seed ortholog is 100%.
Bootstrap support for F6PW28 as seed ortholog is 98%.

Group of orthologs #262. Best score 408 bits
Score difference with first non-orthologous sequence - A.gossypii:408 C.intestinalis:135

Q75AY3              	100.00%		F6PRK2              	100.00%
Bootstrap support for Q75AY3 as seed ortholog is 100%.
Bootstrap support for F6PRK2 as seed ortholog is 96%.

Group of orthologs #263. Best score 408 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.intestinalis:134

Q754U8              	100.00%		F6TZX4              	100.00%
Bootstrap support for Q754U8 as seed ortholog is 99%.
Bootstrap support for F6TZX4 as seed ortholog is 99%.

Group of orthologs #264. Best score 408 bits
Score difference with first non-orthologous sequence - A.gossypii:408 C.intestinalis:408

Q75E56              	100.00%		F6QF37              	100.00%
Bootstrap support for Q75E56 as seed ortholog is 100%.
Bootstrap support for F6QF37 as seed ortholog is 100%.

Group of orthologs #265. Best score 408 bits
Score difference with first non-orthologous sequence - A.gossypii:408 C.intestinalis:243

Q75ED8              	100.00%		F6TX56              	100.00%
Bootstrap support for Q75ED8 as seed ortholog is 100%.
Bootstrap support for F6TX56 as seed ortholog is 100%.

Group of orthologs #266. Best score 408 bits
Score difference with first non-orthologous sequence - A.gossypii:408 C.intestinalis:408

Q74ZH6              	100.00%		F7AVN1              	100.00%
Bootstrap support for Q74ZH6 as seed ortholog is 100%.
Bootstrap support for F7AVN1 as seed ortholog is 100%.

Group of orthologs #267. Best score 408 bits
Score difference with first non-orthologous sequence - A.gossypii:177 C.intestinalis:204

Q75F95              	100.00%		F6YGC1              	100.00%
Bootstrap support for Q75F95 as seed ortholog is 99%.
Bootstrap support for F6YGC1 as seed ortholog is 100%.

Group of orthologs #268. Best score 408 bits
Score difference with first non-orthologous sequence - A.gossypii:408 C.intestinalis:205

Q75DX7              	100.00%		H2XYE1              	100.00%
Bootstrap support for Q75DX7 as seed ortholog is 100%.
Bootstrap support for H2XYE1 as seed ortholog is 100%.

Group of orthologs #269. Best score 407 bits
Score difference with first non-orthologous sequence - A.gossypii:407 C.intestinalis:407

Q756M4              	100.00%		F6PG92              	100.00%
Bootstrap support for Q756M4 as seed ortholog is 100%.
Bootstrap support for F6PG92 as seed ortholog is 100%.

Group of orthologs #270. Best score 407 bits
Score difference with first non-orthologous sequence - A.gossypii:407 C.intestinalis:407

Q75CB7              	100.00%		F6RCY1              	100.00%
Bootstrap support for Q75CB7 as seed ortholog is 100%.
Bootstrap support for F6RCY1 as seed ortholog is 100%.

Group of orthologs #271. Best score 406 bits
Score difference with first non-orthologous sequence - A.gossypii:338 C.intestinalis:406

Q75A16              	100.00%		F6TBI8              	100.00%
Bootstrap support for Q75A16 as seed ortholog is 100%.
Bootstrap support for F6TBI8 as seed ortholog is 100%.

Group of orthologs #272. Best score 406 bits
Score difference with first non-orthologous sequence - A.gossypii:406 C.intestinalis:406

Q75B86              	100.00%		F6XQ09              	100.00%
Bootstrap support for Q75B86 as seed ortholog is 100%.
Bootstrap support for F6XQ09 as seed ortholog is 100%.

Group of orthologs #273. Best score 406 bits
Score difference with first non-orthologous sequence - A.gossypii:406 C.intestinalis:406

Q751G2              	100.00%		F7B7H5              	100.00%
Bootstrap support for Q751G2 as seed ortholog is 100%.
Bootstrap support for F7B7H5 as seed ortholog is 100%.

Group of orthologs #274. Best score 405 bits
Score difference with first non-orthologous sequence - A.gossypii:405 C.intestinalis:405

Q75CF0              	100.00%		F6SPZ6              	100.00%
Bootstrap support for Q75CF0 as seed ortholog is 100%.
Bootstrap support for F6SPZ6 as seed ortholog is 100%.

Group of orthologs #275. Best score 403 bits
Score difference with first non-orthologous sequence - A.gossypii:403 C.intestinalis:403

Q753D4              	100.00%		F6SXA4              	100.00%
Bootstrap support for Q753D4 as seed ortholog is 100%.
Bootstrap support for F6SXA4 as seed ortholog is 100%.

Group of orthologs #276. Best score 403 bits
Score difference with first non-orthologous sequence - A.gossypii:403 C.intestinalis:403

Q753Z3              	100.00%		F6XKA2              	100.00%
Bootstrap support for Q753Z3 as seed ortholog is 100%.
Bootstrap support for F6XKA2 as seed ortholog is 100%.

Group of orthologs #277. Best score 403 bits
Score difference with first non-orthologous sequence - A.gossypii:105 C.intestinalis:403

Q757W8              	100.00%		F6YWY7              	100.00%
Bootstrap support for Q757W8 as seed ortholog is 99%.
Bootstrap support for F6YWY7 as seed ortholog is 100%.

Group of orthologs #278. Best score 402 bits
Score difference with first non-orthologous sequence - A.gossypii:24 C.intestinalis:285

Q75C31              	100.00%		F6U7R9              	100.00%
Bootstrap support for Q75C31 as seed ortholog is 55%.
Alternative seed ortholog is Q750J2 (24 bits away from this cluster)
Bootstrap support for F6U7R9 as seed ortholog is 100%.

Group of orthologs #279. Best score 402 bits
Score difference with first non-orthologous sequence - A.gossypii:232 C.intestinalis:328

Q754I9              	100.00%		F7A713              	100.00%
Bootstrap support for Q754I9 as seed ortholog is 100%.
Bootstrap support for F7A713 as seed ortholog is 100%.

Group of orthologs #280. Best score 401 bits
Score difference with first non-orthologous sequence - A.gossypii:199 C.intestinalis:76

Q75B16              	100.00%		F6RHH3              	100.00%
Bootstrap support for Q75B16 as seed ortholog is 99%.
Bootstrap support for F6RHH3 as seed ortholog is 83%.

Group of orthologs #281. Best score 401 bits
Score difference with first non-orthologous sequence - A.gossypii:15 C.intestinalis:66

Q75DK7              	100.00%		F6ZCE0              	100.00%
Bootstrap support for Q75DK7 as seed ortholog is 85%.
Bootstrap support for F6ZCE0 as seed ortholog is 99%.

Group of orthologs #282. Best score 401 bits
Score difference with first non-orthologous sequence - A.gossypii:401 C.intestinalis:401

Q755T1              	100.00%		H2XZM3              	100.00%
Bootstrap support for Q755T1 as seed ortholog is 100%.
Bootstrap support for H2XZM3 as seed ortholog is 100%.

Group of orthologs #283. Best score 399 bits
Score difference with first non-orthologous sequence - A.gossypii:399 C.intestinalis:43

Q758H3              	100.00%		F7A4H8              	100.00%
Bootstrap support for Q758H3 as seed ortholog is 100%.
Bootstrap support for F7A4H8 as seed ortholog is 88%.

Group of orthologs #284. Best score 398 bits
Score difference with first non-orthologous sequence - A.gossypii:346 C.intestinalis:120

Q74ZV2              	100.00%		F6UGA6              	100.00%
Bootstrap support for Q74ZV2 as seed ortholog is 100%.
Bootstrap support for F6UGA6 as seed ortholog is 98%.

Group of orthologs #285. Best score 398 bits
Score difference with first non-orthologous sequence - A.gossypii:398 C.intestinalis:334

Q75DS8              	100.00%		F6QI83              	100.00%
Bootstrap support for Q75DS8 as seed ortholog is 100%.
Bootstrap support for F6QI83 as seed ortholog is 100%.

Group of orthologs #286. Best score 396 bits
Score difference with first non-orthologous sequence - A.gossypii:396 C.intestinalis:396

Q75BT9              	100.00%		F6VUM2              	100.00%
Bootstrap support for Q75BT9 as seed ortholog is 100%.
Bootstrap support for F6VUM2 as seed ortholog is 100%.

Group of orthologs #287. Best score 395 bits
Score difference with first non-orthologous sequence - A.gossypii:395 C.intestinalis:395

Q75DZ9              	100.00%		F6ZWW6              	100.00%
Bootstrap support for Q75DZ9 as seed ortholog is 100%.
Bootstrap support for F6ZWW6 as seed ortholog is 100%.

Group of orthologs #288. Best score 393 bits
Score difference with first non-orthologous sequence - A.gossypii:393 C.intestinalis:393

Q75F76              	100.00%		F6VYC6              	100.00%
Bootstrap support for Q75F76 as seed ortholog is 100%.
Bootstrap support for F6VYC6 as seed ortholog is 100%.

Group of orthologs #289. Best score 392 bits
Score difference with first non-orthologous sequence - A.gossypii:392 C.intestinalis:392

Q757D2              	100.00%		F6XCG6              	100.00%
Bootstrap support for Q757D2 as seed ortholog is 100%.
Bootstrap support for F6XCG6 as seed ortholog is 100%.

Group of orthologs #290. Best score 390 bits
Score difference with first non-orthologous sequence - A.gossypii:390 C.intestinalis:390

Q75DL9              	100.00%		H2XJK0              	100.00%
Bootstrap support for Q75DL9 as seed ortholog is 100%.
Bootstrap support for H2XJK0 as seed ortholog is 100%.

Group of orthologs #291. Best score 389 bits
Score difference with first non-orthologous sequence - A.gossypii:389 C.intestinalis:389

Q758I0              	100.00%		F6USX3              	100.00%
Bootstrap support for Q758I0 as seed ortholog is 100%.
Bootstrap support for F6USX3 as seed ortholog is 100%.

Group of orthologs #292. Best score 389 bits
Score difference with first non-orthologous sequence - A.gossypii:389 C.intestinalis:389

Q756T4              	100.00%		F6WAD4              	100.00%
Bootstrap support for Q756T4 as seed ortholog is 100%.
Bootstrap support for F6WAD4 as seed ortholog is 100%.

Group of orthologs #293. Best score 389 bits
Score difference with first non-orthologous sequence - A.gossypii:287 C.intestinalis:252

Q750E9              	100.00%		H2XLP3              	100.00%
Bootstrap support for Q750E9 as seed ortholog is 100%.
Bootstrap support for H2XLP3 as seed ortholog is 100%.

Group of orthologs #294. Best score 388 bits
Score difference with first non-orthologous sequence - A.gossypii:388 C.intestinalis:309

Q751I9              	100.00%		F6S6E8              	100.00%
Bootstrap support for Q751I9 as seed ortholog is 100%.
Bootstrap support for F6S6E8 as seed ortholog is 100%.

Group of orthologs #295. Best score 388 bits
Score difference with first non-orthologous sequence - A.gossypii:388 C.intestinalis:388

Q758F4              	100.00%		F6SLC8              	100.00%
Bootstrap support for Q758F4 as seed ortholog is 100%.
Bootstrap support for F6SLC8 as seed ortholog is 100%.

Group of orthologs #296. Best score 388 bits
Score difference with first non-orthologous sequence - A.gossypii:316 C.intestinalis:322

Q75F99              	100.00%		F6UHI7              	100.00%
Bootstrap support for Q75F99 as seed ortholog is 100%.
Bootstrap support for F6UHI7 as seed ortholog is 100%.

Group of orthologs #297. Best score 386 bits
Score difference with first non-orthologous sequence - A.gossypii:299 C.intestinalis:216

Q754V9              	100.00%		F6W9I8              	100.00%
Bootstrap support for Q754V9 as seed ortholog is 100%.
Bootstrap support for F6W9I8 as seed ortholog is 100%.

Group of orthologs #298. Best score 386 bits
Score difference with first non-orthologous sequence - A.gossypii:386 C.intestinalis:286

Q758I6              	100.00%		F7A606              	100.00%
Bootstrap support for Q758I6 as seed ortholog is 100%.
Bootstrap support for F7A606 as seed ortholog is 100%.

Group of orthologs #299. Best score 385 bits
Score difference with first non-orthologous sequence - A.gossypii:385 C.intestinalis:113

Q752E9              	100.00%		F6XSL1              	100.00%
Bootstrap support for Q752E9 as seed ortholog is 100%.
Bootstrap support for F6XSL1 as seed ortholog is 99%.

Group of orthologs #300. Best score 383 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.intestinalis:320

Q74Z35              	100.00%		F6R5L0              	100.00%
Q751A4              	9.21%		
Bootstrap support for Q74Z35 as seed ortholog is 96%.
Bootstrap support for F6R5L0 as seed ortholog is 100%.

Group of orthologs #301. Best score 383 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.intestinalis:140

Q759V7              	100.00%		F6S4Q0              	100.00%
Bootstrap support for Q759V7 as seed ortholog is 99%.
Bootstrap support for F6S4Q0 as seed ortholog is 99%.

Group of orthologs #302. Best score 383 bits
Score difference with first non-orthologous sequence - A.gossypii:4 C.intestinalis:183

Q757T3              	100.00%		F6TV75              	100.00%
Bootstrap support for Q757T3 as seed ortholog is 56%.
Alternative seed ortholog is Q751T7 (4 bits away from this cluster)
Bootstrap support for F6TV75 as seed ortholog is 99%.

Group of orthologs #303. Best score 381 bits
Score difference with first non-orthologous sequence - A.gossypii:235 C.intestinalis:223

Q75C39              	100.00%		F6XTY4              	100.00%
Bootstrap support for Q75C39 as seed ortholog is 100%.
Bootstrap support for F6XTY4 as seed ortholog is 100%.

Group of orthologs #304. Best score 378 bits
Score difference with first non-orthologous sequence - A.gossypii:279 C.intestinalis:244

Q756B9              	100.00%		F6XBC5              	100.00%
Bootstrap support for Q756B9 as seed ortholog is 100%.
Bootstrap support for F6XBC5 as seed ortholog is 100%.

Group of orthologs #305. Best score 376 bits
Score difference with first non-orthologous sequence - A.gossypii:376 C.intestinalis:36

Q75E73              	100.00%		F6QWQ4              	100.00%
Bootstrap support for Q75E73 as seed ortholog is 100%.
Bootstrap support for F6QWQ4 as seed ortholog is 79%.

Group of orthologs #306. Best score 376 bits
Score difference with first non-orthologous sequence - A.gossypii:289 C.intestinalis:285

Q75BY3              	100.00%		F7A5V7              	100.00%
Bootstrap support for Q75BY3 as seed ortholog is 100%.
Bootstrap support for F7A5V7 as seed ortholog is 100%.

Group of orthologs #307. Best score 375 bits
Score difference with first non-orthologous sequence - A.gossypii:153 C.intestinalis:375

Q753E5              	100.00%		F6TLX8              	100.00%
Bootstrap support for Q753E5 as seed ortholog is 99%.
Bootstrap support for F6TLX8 as seed ortholog is 100%.

Group of orthologs #308. Best score 375 bits
Score difference with first non-orthologous sequence - A.gossypii:375 C.intestinalis:375

Q75EW4              	100.00%		F6TD07              	100.00%
Bootstrap support for Q75EW4 as seed ortholog is 100%.
Bootstrap support for F6TD07 as seed ortholog is 100%.

Group of orthologs #309. Best score 374 bits
Score difference with first non-orthologous sequence - A.gossypii:374 C.intestinalis:374

Q74ZC6              	100.00%		F6PWP3              	100.00%
Bootstrap support for Q74ZC6 as seed ortholog is 100%.
Bootstrap support for F6PWP3 as seed ortholog is 100%.

Group of orthologs #310. Best score 374 bits
Score difference with first non-orthologous sequence - A.gossypii:374 C.intestinalis:374

Q75ED5              	100.00%		H2Y164              	100.00%
Bootstrap support for Q75ED5 as seed ortholog is 100%.
Bootstrap support for H2Y164 as seed ortholog is 100%.

Group of orthologs #311. Best score 373 bits
Score difference with first non-orthologous sequence - A.gossypii:373 C.intestinalis:373

Q75C15              	100.00%		F7B4V9              	100.00%
Bootstrap support for Q75C15 as seed ortholog is 100%.
Bootstrap support for F7B4V9 as seed ortholog is 100%.

Group of orthologs #312. Best score 372 bits
Score difference with first non-orthologous sequence - A.gossypii:372 C.intestinalis:372

Q750I3              	100.00%		F6TEN3              	100.00%
                    	       		F6W3N0              	5.11%
Bootstrap support for Q750I3 as seed ortholog is 100%.
Bootstrap support for F6TEN3 as seed ortholog is 100%.

Group of orthologs #313. Best score 372 bits
Score difference with first non-orthologous sequence - A.gossypii:303 C.intestinalis:372

Q75AP7              	100.00%		F6Q096              	100.00%
Bootstrap support for Q75AP7 as seed ortholog is 100%.
Bootstrap support for F6Q096 as seed ortholog is 100%.

Group of orthologs #314. Best score 372 bits
Score difference with first non-orthologous sequence - A.gossypii:372 C.intestinalis:372

Q758H4              	100.00%		F6WNR2              	100.00%
Bootstrap support for Q758H4 as seed ortholog is 100%.
Bootstrap support for F6WNR2 as seed ortholog is 100%.

Group of orthologs #315. Best score 372 bits
Score difference with first non-orthologous sequence - A.gossypii:372 C.intestinalis:372

Q758F5              	100.00%		F6Z3U3              	100.00%
Bootstrap support for Q758F5 as seed ortholog is 100%.
Bootstrap support for F6Z3U3 as seed ortholog is 100%.

Group of orthologs #316. Best score 371 bits
Score difference with first non-orthologous sequence - A.gossypii:371 C.intestinalis:371

Q752A9              	100.00%		F7BIS1              	100.00%
Bootstrap support for Q752A9 as seed ortholog is 100%.
Bootstrap support for F7BIS1 as seed ortholog is 100%.

Group of orthologs #317. Best score 371 bits
Score difference with first non-orthologous sequence - A.gossypii:371 C.intestinalis:371

Q757E3              	100.00%		Q1RLG4              	100.00%
Bootstrap support for Q757E3 as seed ortholog is 100%.
Bootstrap support for Q1RLG4 as seed ortholog is 100%.

Group of orthologs #318. Best score 370 bits
Score difference with first non-orthologous sequence - A.gossypii:370 C.intestinalis:370

Q756N5              	100.00%		F6UHM2              	100.00%
Bootstrap support for Q756N5 as seed ortholog is 100%.
Bootstrap support for F6UHM2 as seed ortholog is 100%.

Group of orthologs #319. Best score 369 bits
Score difference with first non-orthologous sequence - A.gossypii:369 C.intestinalis:228

Q75CL7              	100.00%		F6WKD5              	100.00%
Bootstrap support for Q75CL7 as seed ortholog is 100%.
Bootstrap support for F6WKD5 as seed ortholog is 100%.

Group of orthologs #320. Best score 368 bits
Score difference with first non-orthologous sequence - A.gossypii:368 C.intestinalis:236

Q74ZU5              	100.00%		F6VT08              	100.00%
Bootstrap support for Q74ZU5 as seed ortholog is 100%.
Bootstrap support for F6VT08 as seed ortholog is 100%.

Group of orthologs #321. Best score 366 bits
Score difference with first non-orthologous sequence - A.gossypii:366 C.intestinalis:366

Q75AE7              	100.00%		F6SQQ1              	100.00%
Bootstrap support for Q75AE7 as seed ortholog is 100%.
Bootstrap support for F6SQQ1 as seed ortholog is 100%.

Group of orthologs #322. Best score 365 bits
Score difference with first non-orthologous sequence - A.gossypii:365 C.intestinalis:365

Q75CW2              	100.00%		F6XMM6              	100.00%
Bootstrap support for Q75CW2 as seed ortholog is 100%.
Bootstrap support for F6XMM6 as seed ortholog is 100%.

Group of orthologs #323. Best score 364 bits
Score difference with first non-orthologous sequence - A.gossypii:364 C.intestinalis:364

Q75CI4              	100.00%		F6ZX12              	100.00%
Bootstrap support for Q75CI4 as seed ortholog is 100%.
Bootstrap support for F6ZX12 as seed ortholog is 100%.

Group of orthologs #324. Best score 363 bits
Score difference with first non-orthologous sequence - A.gossypii:363 C.intestinalis:297

Q75CN5              	100.00%		F6Q9C5              	100.00%
Bootstrap support for Q75CN5 as seed ortholog is 100%.
Bootstrap support for F6Q9C5 as seed ortholog is 100%.

Group of orthologs #325. Best score 363 bits
Score difference with first non-orthologous sequence - A.gossypii:363 C.intestinalis:227

Q754X6              	100.00%		F6ZVC8              	100.00%
Bootstrap support for Q754X6 as seed ortholog is 100%.
Bootstrap support for F6ZVC8 as seed ortholog is 100%.

Group of orthologs #326. Best score 361 bits
Score difference with first non-orthologous sequence - A.gossypii:199 C.intestinalis:284

Q750S7              	100.00%		F6UBT3              	100.00%
Bootstrap support for Q750S7 as seed ortholog is 100%.
Bootstrap support for F6UBT3 as seed ortholog is 100%.

Group of orthologs #327. Best score 361 bits
Score difference with first non-orthologous sequence - A.gossypii:361 C.intestinalis:361

Q752K8              	100.00%		F6UDJ0              	100.00%
Bootstrap support for Q752K8 as seed ortholog is 100%.
Bootstrap support for F6UDJ0 as seed ortholog is 100%.

Group of orthologs #328. Best score 358 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.intestinalis:61

Q754F9              	100.00%		H2Y169              	100.00%
Bootstrap support for Q754F9 as seed ortholog is 99%.
Bootstrap support for H2Y169 as seed ortholog is 97%.

Group of orthologs #329. Best score 356 bits
Score difference with first non-orthologous sequence - A.gossypii:192 C.intestinalis:205

Q750F8              	100.00%		F6ZUU0              	100.00%
Bootstrap support for Q750F8 as seed ortholog is 99%.
Bootstrap support for F6ZUU0 as seed ortholog is 99%.

Group of orthologs #330. Best score 356 bits
Score difference with first non-orthologous sequence - A.gossypii:356 C.intestinalis:356

Q754W9              	100.00%		H2Y130              	100.00%
Bootstrap support for Q754W9 as seed ortholog is 100%.
Bootstrap support for H2Y130 as seed ortholog is 100%.

Group of orthologs #331. Best score 354 bits
Score difference with first non-orthologous sequence - A.gossypii:354 C.intestinalis:204

Q751B0              	100.00%		F7AZV0              	100.00%
Bootstrap support for Q751B0 as seed ortholog is 100%.
Bootstrap support for F7AZV0 as seed ortholog is 100%.

Group of orthologs #332. Best score 354 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.intestinalis:207

Q759M3              	100.00%		Q9NL43              	100.00%
Bootstrap support for Q759M3 as seed ortholog is 99%.
Bootstrap support for Q9NL43 as seed ortholog is 100%.

Group of orthologs #333. Best score 353 bits
Score difference with first non-orthologous sequence - A.gossypii:353 C.intestinalis:225

Q754N2              	100.00%		F6PLA8              	100.00%
Q75AI0              	12.32%		
Bootstrap support for Q754N2 as seed ortholog is 100%.
Bootstrap support for F6PLA8 as seed ortholog is 100%.

Group of orthologs #334. Best score 352 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.intestinalis:184

Q75B34              	100.00%		F6PKL5              	100.00%
Bootstrap support for Q75B34 as seed ortholog is 99%.
Bootstrap support for F6PKL5 as seed ortholog is 99%.

Group of orthologs #335. Best score 352 bits
Score difference with first non-orthologous sequence - A.gossypii:150 C.intestinalis:141

Q75AE1              	100.00%		F6ZRR5              	100.00%
Bootstrap support for Q75AE1 as seed ortholog is 99%.
Bootstrap support for F6ZRR5 as seed ortholog is 99%.

Group of orthologs #336. Best score 352 bits
Score difference with first non-orthologous sequence - A.gossypii:352 C.intestinalis:175

Q75A43              	100.00%		H2XQX6              	100.00%
Bootstrap support for Q75A43 as seed ortholog is 100%.
Bootstrap support for H2XQX6 as seed ortholog is 99%.

Group of orthologs #337. Best score 352 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.intestinalis:287

Q758B3              	100.00%		H2XVN3              	100.00%
Bootstrap support for Q758B3 as seed ortholog is 99%.
Bootstrap support for H2XVN3 as seed ortholog is 100%.

Group of orthologs #338. Best score 351 bits
Score difference with first non-orthologous sequence - A.gossypii:261 C.intestinalis:275

Q750K1              	100.00%		F6SUM0              	100.00%
                    	       		F7AAH8              	45.40%
Bootstrap support for Q750K1 as seed ortholog is 100%.
Bootstrap support for F6SUM0 as seed ortholog is 100%.

Group of orthologs #339. Best score 351 bits
Score difference with first non-orthologous sequence - A.gossypii:351 C.intestinalis:351

Q752M1              	100.00%		F6WLN1              	100.00%
Bootstrap support for Q752M1 as seed ortholog is 100%.
Bootstrap support for F6WLN1 as seed ortholog is 100%.

Group of orthologs #340. Best score 349 bits
Score difference with first non-orthologous sequence - A.gossypii:349 C.intestinalis:349

Q75F36              	100.00%		F6XP34              	100.00%
Bootstrap support for Q75F36 as seed ortholog is 100%.
Bootstrap support for F6XP34 as seed ortholog is 100%.

Group of orthologs #341. Best score 348 bits
Score difference with first non-orthologous sequence - A.gossypii:348 C.intestinalis:105

Q74ZU1              	100.00%		F6WL19              	100.00%
                    	       		F6TNW3              	9.21%
Bootstrap support for Q74ZU1 as seed ortholog is 100%.
Bootstrap support for F6WL19 as seed ortholog is 99%.

Group of orthologs #342. Best score 347 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.intestinalis:200

Q75CE2              	100.00%		F6YRI1              	100.00%
                    	       		F6WF19              	5.98%
Bootstrap support for Q75CE2 as seed ortholog is 85%.
Bootstrap support for F6YRI1 as seed ortholog is 99%.

Group of orthologs #343. Best score 346 bits
Score difference with first non-orthologous sequence - A.gossypii:346 C.intestinalis:346

Q75DA2              	100.00%		F6PX61              	100.00%
Bootstrap support for Q75DA2 as seed ortholog is 100%.
Bootstrap support for F6PX61 as seed ortholog is 100%.

Group of orthologs #344. Best score 346 bits
Score difference with first non-orthologous sequence - A.gossypii:346 C.intestinalis:346

P62513              	100.00%		Q8HIN5              	100.00%
Bootstrap support for P62513 as seed ortholog is 100%.
Bootstrap support for Q8HIN5 as seed ortholog is 100%.

Group of orthologs #345. Best score 345 bits
Score difference with first non-orthologous sequence - A.gossypii:24 C.intestinalis:103

Q754Q3              	100.00%		Q4H3L5              	100.00%
Q75CV7              	10.68%		
Bootstrap support for Q754Q3 as seed ortholog is 75%.
Bootstrap support for Q4H3L5 as seed ortholog is 99%.

Group of orthologs #346. Best score 345 bits
Score difference with first non-orthologous sequence - A.gossypii:345 C.intestinalis:345

Q758X9              	100.00%		F6U8C7              	100.00%
Bootstrap support for Q758X9 as seed ortholog is 100%.
Bootstrap support for F6U8C7 as seed ortholog is 100%.

Group of orthologs #347. Best score 345 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.intestinalis:107

Q752X1              	100.00%		F7A1V5              	100.00%
Bootstrap support for Q752X1 as seed ortholog is 99%.
Bootstrap support for F7A1V5 as seed ortholog is 99%.

Group of orthologs #348. Best score 345 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:345

Q753W1              	100.00%		F7AJP1              	100.00%
Bootstrap support for Q753W1 as seed ortholog is 98%.
Bootstrap support for F7AJP1 as seed ortholog is 100%.

Group of orthologs #349. Best score 345 bits
Score difference with first non-orthologous sequence - A.gossypii:345 C.intestinalis:134

Q75A24              	100.00%		H2Y323              	100.00%
Bootstrap support for Q75A24 as seed ortholog is 100%.
Bootstrap support for H2Y323 as seed ortholog is 98%.

Group of orthologs #350. Best score 344 bits
Score difference with first non-orthologous sequence - A.gossypii:269 C.intestinalis:239

Q753X3              	100.00%		F6SK29              	100.00%
Bootstrap support for Q753X3 as seed ortholog is 100%.
Bootstrap support for F6SK29 as seed ortholog is 100%.

Group of orthologs #351. Best score 344 bits
Score difference with first non-orthologous sequence - A.gossypii:136 C.intestinalis:174

Q756G5              	100.00%		F6SDQ3              	100.00%
Bootstrap support for Q756G5 as seed ortholog is 99%.
Bootstrap support for F6SDQ3 as seed ortholog is 100%.

Group of orthologs #352. Best score 343 bits
Score difference with first non-orthologous sequence - A.gossypii:343 C.intestinalis:275

Q74ZL8              	100.00%		F6WWW4              	100.00%
Bootstrap support for Q74ZL8 as seed ortholog is 100%.
Bootstrap support for F6WWW4 as seed ortholog is 100%.

Group of orthologs #353. Best score 342 bits
Score difference with first non-orthologous sequence - A.gossypii:342 C.intestinalis:342

Q751T0              	100.00%		H2XL83              	100.00%
Bootstrap support for Q751T0 as seed ortholog is 100%.
Bootstrap support for H2XL83 as seed ortholog is 100%.

Group of orthologs #354. Best score 341 bits
Score difference with first non-orthologous sequence - A.gossypii:341 C.intestinalis:341

Q75CU7              	100.00%		F6ZLM3              	100.00%
Bootstrap support for Q75CU7 as seed ortholog is 100%.
Bootstrap support for F6ZLM3 as seed ortholog is 100%.

Group of orthologs #355. Best score 341 bits
Score difference with first non-orthologous sequence - A.gossypii:341 C.intestinalis:249

Q759J7              	100.00%		F7B0I1              	100.00%
Bootstrap support for Q759J7 as seed ortholog is 100%.
Bootstrap support for F7B0I1 as seed ortholog is 100%.

Group of orthologs #356. Best score 340 bits
Score difference with first non-orthologous sequence - A.gossypii:340 C.intestinalis:11

Q751B3              	100.00%		F6ST44              	100.00%
Bootstrap support for Q751B3 as seed ortholog is 100%.
Bootstrap support for F6ST44 as seed ortholog is 56%.
Alternative seed ortholog is F6WDL0 (11 bits away from this cluster)

Group of orthologs #357. Best score 339 bits
Score difference with first non-orthologous sequence - A.gossypii:339 C.intestinalis:339

Q753X4              	100.00%		F6S902              	100.00%
Bootstrap support for Q753X4 as seed ortholog is 100%.
Bootstrap support for F6S902 as seed ortholog is 100%.

Group of orthologs #358. Best score 339 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.intestinalis:339

Q750G3              	100.00%		F6TZU9              	100.00%
Bootstrap support for Q750G3 as seed ortholog is 99%.
Bootstrap support for F6TZU9 as seed ortholog is 100%.

Group of orthologs #359. Best score 339 bits
Score difference with first non-orthologous sequence - A.gossypii:339 C.intestinalis:339

Q75BA7              	100.00%		F6TLL4              	100.00%
Bootstrap support for Q75BA7 as seed ortholog is 100%.
Bootstrap support for F6TLL4 as seed ortholog is 100%.

Group of orthologs #360. Best score 337 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.intestinalis:87

Q754D3              	100.00%		F6SUS9              	100.00%
Bootstrap support for Q754D3 as seed ortholog is 99%.
Bootstrap support for F6SUS9 as seed ortholog is 99%.

Group of orthologs #361. Best score 337 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.intestinalis:337

Q757R7              	100.00%		F6YL86              	100.00%
Bootstrap support for Q757R7 as seed ortholog is 99%.
Bootstrap support for F6YL86 as seed ortholog is 100%.

Group of orthologs #362. Best score 337 bits
Score difference with first non-orthologous sequence - A.gossypii:337 C.intestinalis:337

Q75EK2              	100.00%		F6YVU0              	100.00%
Bootstrap support for Q75EK2 as seed ortholog is 100%.
Bootstrap support for F6YVU0 as seed ortholog is 100%.

Group of orthologs #363. Best score 336 bits
Score difference with first non-orthologous sequence - A.gossypii:336 C.intestinalis:336

Q750L7              	100.00%		F6W1Y5              	100.00%
Bootstrap support for Q750L7 as seed ortholog is 100%.
Bootstrap support for F6W1Y5 as seed ortholog is 100%.

Group of orthologs #364. Best score 336 bits
Score difference with first non-orthologous sequence - A.gossypii:336 C.intestinalis:336

Q752W7              	100.00%		F6YY15              	100.00%
Bootstrap support for Q752W7 as seed ortholog is 100%.
Bootstrap support for F6YY15 as seed ortholog is 100%.

Group of orthologs #365. Best score 335 bits
Score difference with first non-orthologous sequence - A.gossypii:335 C.intestinalis:335

Q750Z7              	100.00%		F6X600              	100.00%
Bootstrap support for Q750Z7 as seed ortholog is 100%.
Bootstrap support for F6X600 as seed ortholog is 100%.

Group of orthologs #366. Best score 335 bits
Score difference with first non-orthologous sequence - A.gossypii:335 C.intestinalis:275

Q75A46              	100.00%		F6YHS8              	100.00%
Bootstrap support for Q75A46 as seed ortholog is 100%.
Bootstrap support for F6YHS8 as seed ortholog is 100%.

Group of orthologs #367. Best score 335 bits
Score difference with first non-orthologous sequence - A.gossypii:288 C.intestinalis:335

Q75A83              	100.00%		H2XZG0              	100.00%
Bootstrap support for Q75A83 as seed ortholog is 100%.
Bootstrap support for H2XZG0 as seed ortholog is 100%.

Group of orthologs #368. Best score 334 bits
Score difference with first non-orthologous sequence - A.gossypii:334 C.intestinalis:334

Q754D6              	100.00%		F6UTV1              	100.00%
Bootstrap support for Q754D6 as seed ortholog is 100%.
Bootstrap support for F6UTV1 as seed ortholog is 100%.

Group of orthologs #369. Best score 334 bits
Score difference with first non-orthologous sequence - A.gossypii:243 C.intestinalis:203

Q758V2              	100.00%		F6U1E2              	100.00%
Bootstrap support for Q758V2 as seed ortholog is 100%.
Bootstrap support for F6U1E2 as seed ortholog is 100%.

Group of orthologs #370. Best score 333 bits
Score difference with first non-orthologous sequence - A.gossypii:333 C.intestinalis:333

Q758B8              	100.00%		H2XP51              	100.00%
Bootstrap support for Q758B8 as seed ortholog is 100%.
Bootstrap support for H2XP51 as seed ortholog is 100%.

Group of orthologs #371. Best score 333 bits
Score difference with first non-orthologous sequence - A.gossypii:333 C.intestinalis:333

Q75F11              	100.00%		H2Y1U3              	100.00%
Bootstrap support for Q75F11 as seed ortholog is 100%.
Bootstrap support for H2Y1U3 as seed ortholog is 100%.

Group of orthologs #372. Best score 331 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.intestinalis:76

Q755B5              	100.00%		F6PH07              	100.00%
Q758E1              	48.68%		H2XXD3              	7.51%
Bootstrap support for Q755B5 as seed ortholog is 99%.
Bootstrap support for F6PH07 as seed ortholog is 98%.

Group of orthologs #373. Best score 330 bits
Score difference with first non-orthologous sequence - A.gossypii:155 C.intestinalis:7

Q75AZ3              	100.00%		F6X7W0              	100.00%
Bootstrap support for Q75AZ3 as seed ortholog is 99%.
Bootstrap support for F6X7W0 as seed ortholog is 57%.
Alternative seed ortholog is F6YNQ3 (7 bits away from this cluster)

Group of orthologs #374. Best score 329 bits
Score difference with first non-orthologous sequence - A.gossypii:329 C.intestinalis:329

Q757G9              	100.00%		H2XL64              	100.00%
Bootstrap support for Q757G9 as seed ortholog is 100%.
Bootstrap support for H2XL64 as seed ortholog is 100%.

Group of orthologs #375. Best score 329 bits
Score difference with first non-orthologous sequence - A.gossypii:329 C.intestinalis:52

Q75BF4              	100.00%		H2Y0P6              	100.00%
Bootstrap support for Q75BF4 as seed ortholog is 100%.
Bootstrap support for H2Y0P6 as seed ortholog is 85%.

Group of orthologs #376. Best score 327 bits
Score difference with first non-orthologous sequence - A.gossypii:327 C.intestinalis:327

Q75DT8              	100.00%		F6R8V3              	100.00%
Bootstrap support for Q75DT8 as seed ortholog is 100%.
Bootstrap support for F6R8V3 as seed ortholog is 100%.

Group of orthologs #377. Best score 327 bits
Score difference with first non-orthologous sequence - A.gossypii:230 C.intestinalis:327

Q75B10              	100.00%		F6TTZ5              	100.00%
Bootstrap support for Q75B10 as seed ortholog is 99%.
Bootstrap support for F6TTZ5 as seed ortholog is 100%.

Group of orthologs #378. Best score 327 bits
Score difference with first non-orthologous sequence - A.gossypii:327 C.intestinalis:253

Q75F61              	100.00%		F7B7E9              	100.00%
Bootstrap support for Q75F61 as seed ortholog is 100%.
Bootstrap support for F7B7E9 as seed ortholog is 100%.

Group of orthologs #379. Best score 326 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.intestinalis:48

Q759W9              	100.00%		Q8WSS1              	100.00%
                    	       		H2Y1Q1              	33.59%
                    	       		F6PR32              	32.56%
Bootstrap support for Q759W9 as seed ortholog is 95%.
Bootstrap support for Q8WSS1 as seed ortholog is 93%.

Group of orthologs #380. Best score 326 bits
Score difference with first non-orthologous sequence - A.gossypii:326 C.intestinalis:326

Q758F6              	100.00%		F6UGN5              	100.00%
Bootstrap support for Q758F6 as seed ortholog is 100%.
Bootstrap support for F6UGN5 as seed ortholog is 100%.

Group of orthologs #381. Best score 326 bits
Score difference with first non-orthologous sequence - A.gossypii:270 C.intestinalis:326

Q758T9              	100.00%		F6VFC5              	100.00%
Bootstrap support for Q758T9 as seed ortholog is 100%.
Bootstrap support for F6VFC5 as seed ortholog is 100%.

Group of orthologs #382. Best score 326 bits
Score difference with first non-orthologous sequence - A.gossypii:326 C.intestinalis:326

Q757G4              	100.00%		F6WUM1              	100.00%
Bootstrap support for Q757G4 as seed ortholog is 100%.
Bootstrap support for F6WUM1 as seed ortholog is 100%.

Group of orthologs #383. Best score 326 bits
Score difference with first non-orthologous sequence - A.gossypii:326 C.intestinalis:326

Q753Q6              	100.00%		H2XVC3              	100.00%
Bootstrap support for Q753Q6 as seed ortholog is 100%.
Bootstrap support for H2XVC3 as seed ortholog is 100%.

Group of orthologs #384. Best score 325 bits
Score difference with first non-orthologous sequence - A.gossypii:325 C.intestinalis:130

Q75F49              	100.00%		F6T1J8              	100.00%
Bootstrap support for Q75F49 as seed ortholog is 100%.
Bootstrap support for F6T1J8 as seed ortholog is 98%.

Group of orthologs #385. Best score 325 bits
Score difference with first non-orthologous sequence - A.gossypii:325 C.intestinalis:77

Q756A3              	100.00%		F7BH52              	100.00%
Bootstrap support for Q756A3 as seed ortholog is 100%.
Bootstrap support for F7BH52 as seed ortholog is 93%.

Group of orthologs #386. Best score 325 bits
Score difference with first non-orthologous sequence - A.gossypii:325 C.intestinalis:325

Q75CG9              	100.00%		H2Y2G1              	100.00%
Bootstrap support for Q75CG9 as seed ortholog is 100%.
Bootstrap support for H2Y2G1 as seed ortholog is 100%.

Group of orthologs #387. Best score 324 bits
Score difference with first non-orthologous sequence - A.gossypii:324 C.intestinalis:324

Q755S1              	100.00%		F6YM78              	100.00%
Bootstrap support for Q755S1 as seed ortholog is 100%.
Bootstrap support for F6YM78 as seed ortholog is 100%.

Group of orthologs #388. Best score 324 bits
Score difference with first non-orthologous sequence - A.gossypii:324 C.intestinalis:324

Q75C13              	100.00%		F7A172              	100.00%
Bootstrap support for Q75C13 as seed ortholog is 100%.
Bootstrap support for F7A172 as seed ortholog is 100%.

Group of orthologs #389. Best score 323 bits
Score difference with first non-orthologous sequence - A.gossypii:323 C.intestinalis:323

Q74ZY3              	100.00%		F6SZY0              	100.00%
Bootstrap support for Q74ZY3 as seed ortholog is 100%.
Bootstrap support for F6SZY0 as seed ortholog is 100%.

Group of orthologs #390. Best score 323 bits
Score difference with first non-orthologous sequence - A.gossypii:279 C.intestinalis:236

Q750Y5              	100.00%		L7N0S3              	100.00%
Bootstrap support for Q750Y5 as seed ortholog is 100%.
Bootstrap support for L7N0S3 as seed ortholog is 99%.

Group of orthologs #391. Best score 322 bits
Score difference with first non-orthologous sequence - A.gossypii:322 C.intestinalis:322

Q75BS1              	100.00%		F6YHB0              	100.00%
Bootstrap support for Q75BS1 as seed ortholog is 100%.
Bootstrap support for F6YHB0 as seed ortholog is 100%.

Group of orthologs #392. Best score 321 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.intestinalis:321

Q754S8              	100.00%		F6UNP2              	100.00%
Bootstrap support for Q754S8 as seed ortholog is 99%.
Bootstrap support for F6UNP2 as seed ortholog is 100%.

Group of orthologs #393. Best score 321 bits
Score difference with first non-orthologous sequence - A.gossypii:321 C.intestinalis:321

Q756Y6              	100.00%		F6WYU9              	100.00%
Bootstrap support for Q756Y6 as seed ortholog is 100%.
Bootstrap support for F6WYU9 as seed ortholog is 100%.

Group of orthologs #394. Best score 321 bits
Score difference with first non-orthologous sequence - A.gossypii:321 C.intestinalis:321

Q750E0              	100.00%		F6Z7S0              	100.00%
Bootstrap support for Q750E0 as seed ortholog is 100%.
Bootstrap support for F6Z7S0 as seed ortholog is 100%.

Group of orthologs #395. Best score 321 bits
Score difference with first non-orthologous sequence - A.gossypii:321 C.intestinalis:321

Q753A2              	100.00%		F7ATT1              	100.00%
Bootstrap support for Q753A2 as seed ortholog is 100%.
Bootstrap support for F7ATT1 as seed ortholog is 100%.

Group of orthologs #396. Best score 320 bits
Score difference with first non-orthologous sequence - A.gossypii:320 C.intestinalis:320

Q75CQ6              	100.00%		F6QE47              	100.00%
Bootstrap support for Q75CQ6 as seed ortholog is 100%.
Bootstrap support for F6QE47 as seed ortholog is 100%.

Group of orthologs #397. Best score 320 bits
Score difference with first non-orthologous sequence - A.gossypii:320 C.intestinalis:320

Q750R2              	100.00%		F6X3Q7              	100.00%
Bootstrap support for Q750R2 as seed ortholog is 100%.
Bootstrap support for F6X3Q7 as seed ortholog is 100%.

Group of orthologs #398. Best score 320 bits
Score difference with first non-orthologous sequence - A.gossypii:320 C.intestinalis:110

Q75BY2              	100.00%		H2XZY0              	100.00%
Bootstrap support for Q75BY2 as seed ortholog is 100%.
Bootstrap support for H2XZY0 as seed ortholog is 99%.

Group of orthologs #399. Best score 319 bits
Score difference with first non-orthologous sequence - A.gossypii:319 C.intestinalis:319

Q754S9              	100.00%		H2XWZ0              	100.00%
Bootstrap support for Q754S9 as seed ortholog is 100%.
Bootstrap support for H2XWZ0 as seed ortholog is 100%.

Group of orthologs #400. Best score 318 bits
Score difference with first non-orthologous sequence - A.gossypii:318 C.intestinalis:318

Q75A55              	100.00%		F6SSP0              	100.00%
Bootstrap support for Q75A55 as seed ortholog is 100%.
Bootstrap support for F6SSP0 as seed ortholog is 100%.

Group of orthologs #401. Best score 317 bits
Score difference with first non-orthologous sequence - A.gossypii:317 C.intestinalis:317

Q755K9              	100.00%		F7AX37              	100.00%
Bootstrap support for Q755K9 as seed ortholog is 100%.
Bootstrap support for F7AX37 as seed ortholog is 100%.

Group of orthologs #402. Best score 315 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.intestinalis:4

Q756M9              	100.00%		H2Y2C6              	100.00%
Bootstrap support for Q756M9 as seed ortholog is 98%.
Bootstrap support for H2Y2C6 as seed ortholog is 50%.
Alternative seed ortholog is F6W8D0 (4 bits away from this cluster)

Group of orthologs #403. Best score 314 bits
Score difference with first non-orthologous sequence - A.gossypii:314 C.intestinalis:314

Q756X6              	100.00%		F6VQ10              	100.00%
                    	       		Q4H2R2              	99.56%
Bootstrap support for Q756X6 as seed ortholog is 100%.
Bootstrap support for F6VQ10 as seed ortholog is 100%.

Group of orthologs #404. Best score 314 bits
Score difference with first non-orthologous sequence - A.gossypii:314 C.intestinalis:314

Q758F8              	100.00%		H2Y0R2              	100.00%
Bootstrap support for Q758F8 as seed ortholog is 100%.
Bootstrap support for H2Y0R2 as seed ortholog is 100%.

Group of orthologs #405. Best score 312 bits
Score difference with first non-orthologous sequence - A.gossypii:312 C.intestinalis:86

Q756R4              	100.00%		F6X753              	100.00%
                    	       		L7N0R8              	15.78%
Bootstrap support for Q756R4 as seed ortholog is 100%.
Bootstrap support for F6X753 as seed ortholog is 94%.

Group of orthologs #406. Best score 312 bits
Score difference with first non-orthologous sequence - A.gossypii:261 C.intestinalis:204

Q759L2              	100.00%		F6TIU3              	100.00%
Bootstrap support for Q759L2 as seed ortholog is 100%.
Bootstrap support for F6TIU3 as seed ortholog is 100%.

Group of orthologs #407. Best score 311 bits
Score difference with first non-orthologous sequence - A.gossypii:311 C.intestinalis:311

Q756V5              	100.00%		F6XDI5              	100.00%
Bootstrap support for Q756V5 as seed ortholog is 100%.
Bootstrap support for F6XDI5 as seed ortholog is 100%.

Group of orthologs #408. Best score 309 bits
Score difference with first non-orthologous sequence - A.gossypii:309 C.intestinalis:39

Q754U6              	100.00%		F6W1V5              	100.00%
                    	       		H2XTN7              	6.37%
Bootstrap support for Q754U6 as seed ortholog is 100%.
Bootstrap support for F6W1V5 as seed ortholog is 77%.

Group of orthologs #409. Best score 309 bits
Score difference with first non-orthologous sequence - A.gossypii:309 C.intestinalis:309

Q750K5              	100.00%		F6RJV3              	100.00%
Bootstrap support for Q750K5 as seed ortholog is 100%.
Bootstrap support for F6RJV3 as seed ortholog is 100%.

Group of orthologs #410. Best score 309 bits
Score difference with first non-orthologous sequence - A.gossypii:127 C.intestinalis:309

Q75F80              	100.00%		F6TAK3              	100.00%
Bootstrap support for Q75F80 as seed ortholog is 99%.
Bootstrap support for F6TAK3 as seed ortholog is 100%.

Group of orthologs #411. Best score 309 bits
Score difference with first non-orthologous sequence - A.gossypii:309 C.intestinalis:309

Q755P9              	100.00%		F7BHB2              	100.00%
Bootstrap support for Q755P9 as seed ortholog is 100%.
Bootstrap support for F7BHB2 as seed ortholog is 100%.

Group of orthologs #412. Best score 308 bits
Score difference with first non-orthologous sequence - A.gossypii:26 C.intestinalis:243

Q759X1              	100.00%		F6SCN2              	100.00%
Bootstrap support for Q759X1 as seed ortholog is 77%.
Bootstrap support for F6SCN2 as seed ortholog is 100%.

Group of orthologs #413. Best score 307 bits
Score difference with first non-orthologous sequence - A.gossypii:307 C.intestinalis:307

Q750P5              	100.00%		F7A2G6              	100.00%
                    	       		H2XP90              	24.05%
                    	       		H2XYS1              	15.98%
                    	       		H2XQ19              	11.70%
Bootstrap support for Q750P5 as seed ortholog is 100%.
Bootstrap support for F7A2G6 as seed ortholog is 100%.

Group of orthologs #414. Best score 307 bits
Score difference with first non-orthologous sequence - A.gossypii:307 C.intestinalis:307

Q750V3              	100.00%		F6UE78              	100.00%
Bootstrap support for Q750V3 as seed ortholog is 100%.
Bootstrap support for F6UE78 as seed ortholog is 100%.

Group of orthologs #415. Best score 306 bits
Score difference with first non-orthologous sequence - A.gossypii:1 C.intestinalis:45

Q75A61              	100.00%		F7ARV5              	100.00%
Bootstrap support for Q75A61 as seed ortholog is 47%.
Alternative seed ortholog is Q751E8 (1 bits away from this cluster)
Bootstrap support for F7ARV5 as seed ortholog is 88%.

Group of orthologs #416. Best score 305 bits
Score difference with first non-orthologous sequence - A.gossypii:305 C.intestinalis:43

Q757C6              	100.00%		F6SUA6              	100.00%
Bootstrap support for Q757C6 as seed ortholog is 100%.
Bootstrap support for F6SUA6 as seed ortholog is 86%.

Group of orthologs #417. Best score 304 bits
Score difference with first non-orthologous sequence - A.gossypii:304 C.intestinalis:304

Q74Z82              	100.00%		F6SAH8              	100.00%
Bootstrap support for Q74Z82 as seed ortholog is 100%.
Bootstrap support for F6SAH8 as seed ortholog is 100%.

Group of orthologs #418. Best score 304 bits
Score difference with first non-orthologous sequence - A.gossypii:304 C.intestinalis:304

Q756G9              	100.00%		H2Y359              	100.00%
Bootstrap support for Q756G9 as seed ortholog is 100%.
Bootstrap support for H2Y359 as seed ortholog is 100%.

Group of orthologs #419. Best score 303 bits
Score difference with first non-orthologous sequence - A.gossypii:303 C.intestinalis:235

Q75BS2              	100.00%		F6X2C4              	100.00%
Bootstrap support for Q75BS2 as seed ortholog is 100%.
Bootstrap support for F6X2C4 as seed ortholog is 100%.

Group of orthologs #420. Best score 302 bits
Score difference with first non-orthologous sequence - A.gossypii:302 C.intestinalis:302

Q753K9              	100.00%		F6VL61              	100.00%
                    	       		F6VKS9              	20.57%
Bootstrap support for Q753K9 as seed ortholog is 100%.
Bootstrap support for F6VL61 as seed ortholog is 100%.

Group of orthologs #421. Best score 302 bits
Score difference with first non-orthologous sequence - A.gossypii:237 C.intestinalis:49

Q756U4              	100.00%		F6XWW8              	100.00%
Bootstrap support for Q756U4 as seed ortholog is 100%.
Bootstrap support for F6XWW8 as seed ortholog is 90%.

Group of orthologs #422. Best score 302 bits
Score difference with first non-orthologous sequence - A.gossypii:302 C.intestinalis:250

Q756K6              	100.00%		F7A1S8              	100.00%
Bootstrap support for Q756K6 as seed ortholog is 100%.
Bootstrap support for F7A1S8 as seed ortholog is 100%.

Group of orthologs #423. Best score 302 bits
Score difference with first non-orthologous sequence - A.gossypii:302 C.intestinalis:302

Q74ZK8              	100.00%		H2XYT3              	100.00%
Bootstrap support for Q74ZK8 as seed ortholog is 100%.
Bootstrap support for H2XYT3 as seed ortholog is 100%.

Group of orthologs #424. Best score 302 bits
Score difference with first non-orthologous sequence - A.gossypii:302 C.intestinalis:302

Q757G2              	100.00%		H2Y288              	100.00%
Bootstrap support for Q757G2 as seed ortholog is 100%.
Bootstrap support for H2Y288 as seed ortholog is 100%.

Group of orthologs #425. Best score 300 bits
Score difference with first non-orthologous sequence - A.gossypii:188 C.intestinalis:300

Q750C1              	100.00%		F6TQG1              	100.00%
Bootstrap support for Q750C1 as seed ortholog is 100%.
Bootstrap support for F6TQG1 as seed ortholog is 100%.

Group of orthologs #426. Best score 300 bits
Score difference with first non-orthologous sequence - A.gossypii:209 C.intestinalis:300

Q75BI3              	100.00%		F6WAY8              	100.00%
Bootstrap support for Q75BI3 as seed ortholog is 99%.
Bootstrap support for F6WAY8 as seed ortholog is 100%.

Group of orthologs #427. Best score 300 bits
Score difference with first non-orthologous sequence - A.gossypii:300 C.intestinalis:300

Q75BE8              	100.00%		F6XUX1              	100.00%
Bootstrap support for Q75BE8 as seed ortholog is 100%.
Bootstrap support for F6XUX1 as seed ortholog is 100%.

Group of orthologs #428. Best score 300 bits
Score difference with first non-orthologous sequence - A.gossypii:300 C.intestinalis:300

Q75DA8              	100.00%		F6ZU97              	100.00%
Bootstrap support for Q75DA8 as seed ortholog is 100%.
Bootstrap support for F6ZU97 as seed ortholog is 100%.

Group of orthologs #429. Best score 298 bits
Score difference with first non-orthologous sequence - A.gossypii:298 C.intestinalis:298

Q758U0              	100.00%		F7B2R9              	100.00%
Bootstrap support for Q758U0 as seed ortholog is 100%.
Bootstrap support for F7B2R9 as seed ortholog is 100%.

Group of orthologs #430. Best score 297 bits
Score difference with first non-orthologous sequence - A.gossypii:297 C.intestinalis:297

Q759C6              	100.00%		F6UET6              	100.00%
Bootstrap support for Q759C6 as seed ortholog is 100%.
Bootstrap support for F6UET6 as seed ortholog is 100%.

Group of orthologs #431. Best score 297 bits
Score difference with first non-orthologous sequence - A.gossypii:297 C.intestinalis:297

Q752U0              	100.00%		F6XK22              	100.00%
Bootstrap support for Q752U0 as seed ortholog is 100%.
Bootstrap support for F6XK22 as seed ortholog is 100%.

Group of orthologs #432. Best score 297 bits
Score difference with first non-orthologous sequence - A.gossypii:297 C.intestinalis:297

Q75E11              	100.00%		F6TXT5              	100.00%
Bootstrap support for Q75E11 as seed ortholog is 100%.
Bootstrap support for F6TXT5 as seed ortholog is 100%.

Group of orthologs #433. Best score 297 bits
Score difference with first non-orthologous sequence - A.gossypii:297 C.intestinalis:297

Q752D6              	100.00%		H2Y3D5              	100.00%
Bootstrap support for Q752D6 as seed ortholog is 100%.
Bootstrap support for H2Y3D5 as seed ortholog is 100%.

Group of orthologs #434. Best score 296 bits
Score difference with first non-orthologous sequence - A.gossypii:296 C.intestinalis:296

Q759G5              	100.00%		F6UZS7              	100.00%
Bootstrap support for Q759G5 as seed ortholog is 100%.
Bootstrap support for F6UZS7 as seed ortholog is 100%.

Group of orthologs #435. Best score 296 bits
Score difference with first non-orthologous sequence - A.gossypii:131 C.intestinalis:296

Q75ER7              	100.00%		F6T0J5              	100.00%
Bootstrap support for Q75ER7 as seed ortholog is 100%.
Bootstrap support for F6T0J5 as seed ortholog is 100%.

Group of orthologs #436. Best score 295 bits
Score difference with first non-orthologous sequence - A.gossypii:295 C.intestinalis:295

Q74ZS2              	100.00%		F6ZRT4              	100.00%
Bootstrap support for Q74ZS2 as seed ortholog is 100%.
Bootstrap support for F6ZRT4 as seed ortholog is 100%.

Group of orthologs #437. Best score 295 bits
Score difference with first non-orthologous sequence - A.gossypii:295 C.intestinalis:295

Q754E7              	100.00%		F6YM02              	100.00%
Bootstrap support for Q754E7 as seed ortholog is 100%.
Bootstrap support for F6YM02 as seed ortholog is 100%.

Group of orthologs #438. Best score 295 bits
Score difference with first non-orthologous sequence - A.gossypii:151 C.intestinalis:122

Q755C4              	100.00%		F7A0P0              	100.00%
Bootstrap support for Q755C4 as seed ortholog is 100%.
Bootstrap support for F7A0P0 as seed ortholog is 99%.

Group of orthologs #439. Best score 295 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:16

Q75A26              	100.00%		H2Y040              	100.00%
Bootstrap support for Q75A26 as seed ortholog is 99%.
Bootstrap support for H2Y040 as seed ortholog is 82%.

Group of orthologs #440. Best score 294 bits
Score difference with first non-orthologous sequence - A.gossypii:294 C.intestinalis:294

Q759D9              	100.00%		F6Q0S7              	100.00%
Bootstrap support for Q759D9 as seed ortholog is 100%.
Bootstrap support for F6Q0S7 as seed ortholog is 100%.

Group of orthologs #441. Best score 294 bits
Score difference with first non-orthologous sequence - A.gossypii:143 C.intestinalis:294

Q756H0              	100.00%		F6Z491              	100.00%
Bootstrap support for Q756H0 as seed ortholog is 100%.
Bootstrap support for F6Z491 as seed ortholog is 100%.

Group of orthologs #442. Best score 294 bits
Score difference with first non-orthologous sequence - A.gossypii:294 C.intestinalis:294

Q75A30              	100.00%		F6YIU2              	100.00%
Bootstrap support for Q75A30 as seed ortholog is 100%.
Bootstrap support for F6YIU2 as seed ortholog is 100%.

Group of orthologs #443. Best score 294 bits
Score difference with first non-orthologous sequence - A.gossypii:294 C.intestinalis:294

Q75B54              	100.00%		F6YQR4              	100.00%
Bootstrap support for Q75B54 as seed ortholog is 100%.
Bootstrap support for F6YQR4 as seed ortholog is 100%.

Group of orthologs #444. Best score 294 bits
Score difference with first non-orthologous sequence - A.gossypii:294 C.intestinalis:294

Q75EA0              	100.00%		H2XWE4              	100.00%
Bootstrap support for Q75EA0 as seed ortholog is 100%.
Bootstrap support for H2XWE4 as seed ortholog is 100%.

Group of orthologs #445. Best score 293 bits
Score difference with first non-orthologous sequence - A.gossypii:113 C.intestinalis:293

Q757P6              	100.00%		F6ZHM4              	100.00%
Bootstrap support for Q757P6 as seed ortholog is 99%.
Bootstrap support for F6ZHM4 as seed ortholog is 100%.

Group of orthologs #446. Best score 293 bits
Score difference with first non-orthologous sequence - A.gossypii:23 C.intestinalis:148

Q753J9              	100.00%		F7BAT7              	100.00%
Bootstrap support for Q753J9 as seed ortholog is 88%.
Bootstrap support for F7BAT7 as seed ortholog is 100%.

Group of orthologs #447. Best score 292 bits
Score difference with first non-orthologous sequence - A.gossypii:41 C.intestinalis:292

Q757J8              	100.00%		F6PN41              	100.00%
Bootstrap support for Q757J8 as seed ortholog is 86%.
Bootstrap support for F6PN41 as seed ortholog is 100%.

Group of orthologs #448. Best score 292 bits
Score difference with first non-orthologous sequence - A.gossypii:241 C.intestinalis:193

Q756J9              	100.00%		F6W8G0              	100.00%
Bootstrap support for Q756J9 as seed ortholog is 100%.
Bootstrap support for F6W8G0 as seed ortholog is 100%.

Group of orthologs #449. Best score 292 bits
Score difference with first non-orthologous sequence - A.gossypii:292 C.intestinalis:292

Q754W1              	100.00%		F6YIY8              	100.00%
Bootstrap support for Q754W1 as seed ortholog is 100%.
Bootstrap support for F6YIY8 as seed ortholog is 100%.

Group of orthologs #450. Best score 292 bits
Score difference with first non-orthologous sequence - A.gossypii:292 C.intestinalis:292

Q75DX3              	100.00%		F7BJA3              	100.00%
Bootstrap support for Q75DX3 as seed ortholog is 100%.
Bootstrap support for F7BJA3 as seed ortholog is 100%.

Group of orthologs #451. Best score 291 bits
Score difference with first non-orthologous sequence - A.gossypii:291 C.intestinalis:291

Q758S8              	100.00%		F6RC25              	100.00%
Bootstrap support for Q758S8 as seed ortholog is 100%.
Bootstrap support for F6RC25 as seed ortholog is 100%.

Group of orthologs #452. Best score 291 bits
Score difference with first non-orthologous sequence - A.gossypii:291 C.intestinalis:291

Q752X7              	100.00%		F6TGX2              	100.00%
Bootstrap support for Q752X7 as seed ortholog is 100%.
Bootstrap support for F6TGX2 as seed ortholog is 100%.

Group of orthologs #453. Best score 291 bits
Score difference with first non-orthologous sequence - A.gossypii:195 C.intestinalis:291

Q75CA8              	100.00%		F6ZU35              	100.00%
Bootstrap support for Q75CA8 as seed ortholog is 100%.
Bootstrap support for F6ZU35 as seed ortholog is 100%.

Group of orthologs #454. Best score 290 bits
Score difference with first non-orthologous sequence - A.gossypii:290 C.intestinalis:290

Q754R0              	100.00%		F6Q512              	100.00%
Bootstrap support for Q754R0 as seed ortholog is 100%.
Bootstrap support for F6Q512 as seed ortholog is 100%.

Group of orthologs #455. Best score 290 bits
Score difference with first non-orthologous sequence - A.gossypii:290 C.intestinalis:290

Q758X6              	100.00%		F6W141              	100.00%
Bootstrap support for Q758X6 as seed ortholog is 100%.
Bootstrap support for F6W141 as seed ortholog is 100%.

Group of orthologs #456. Best score 290 bits
Score difference with first non-orthologous sequence - A.gossypii:290 C.intestinalis:290

Q74ZK3              	100.00%		F7AMR5              	100.00%
Bootstrap support for Q74ZK3 as seed ortholog is 100%.
Bootstrap support for F7AMR5 as seed ortholog is 100%.

Group of orthologs #457. Best score 290 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.intestinalis:139

Q757I6              	100.00%		F7AXN3              	100.00%
Bootstrap support for Q757I6 as seed ortholog is 99%.
Bootstrap support for F7AXN3 as seed ortholog is 99%.

Group of orthologs #458. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:37 C.intestinalis:186

Q75A66              	100.00%		F6SZU4              	100.00%
                    	       		F6T060              	100.00%
Bootstrap support for Q75A66 as seed ortholog is 75%.
Bootstrap support for F6SZU4 as seed ortholog is 99%.
Bootstrap support for F6T060 as seed ortholog is 99%.

Group of orthologs #459. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:289 C.intestinalis:289

Q759R0              	100.00%		F6VKI2              	100.00%
Bootstrap support for Q759R0 as seed ortholog is 100%.
Bootstrap support for F6VKI2 as seed ortholog is 100%.

Group of orthologs #460. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:289 C.intestinalis:102

Q75D71              	100.00%		F6YKJ2              	100.00%
Bootstrap support for Q75D71 as seed ortholog is 100%.
Bootstrap support for F6YKJ2 as seed ortholog is 96%.

Group of orthologs #461. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:289 C.intestinalis:54

Q75D95              	100.00%		H2XKK7              	100.00%
Bootstrap support for Q75D95 as seed ortholog is 100%.
Bootstrap support for H2XKK7 as seed ortholog is 89%.

Group of orthologs #462. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:153 C.intestinalis:62

Q75D02              	100.00%		H2XL87              	100.00%
Bootstrap support for Q75D02 as seed ortholog is 100%.
Bootstrap support for H2XL87 as seed ortholog is 99%.

Group of orthologs #463. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:289 C.intestinalis:199

Q75F44              	100.00%		H2XYW0              	100.00%
Bootstrap support for Q75F44 as seed ortholog is 100%.
Bootstrap support for H2XYW0 as seed ortholog is 100%.

Group of orthologs #464. Best score 288 bits
Score difference with first non-orthologous sequence - A.gossypii:288 C.intestinalis:288

Q755T8              	100.00%		F6TMB1              	100.00%
Bootstrap support for Q755T8 as seed ortholog is 100%.
Bootstrap support for F6TMB1 as seed ortholog is 100%.

Group of orthologs #465. Best score 288 bits
Score difference with first non-orthologous sequence - A.gossypii:224 C.intestinalis:288

Q75E36              	100.00%		F6RA65              	100.00%
Bootstrap support for Q75E36 as seed ortholog is 100%.
Bootstrap support for F6RA65 as seed ortholog is 100%.

Group of orthologs #466. Best score 288 bits
Score difference with first non-orthologous sequence - A.gossypii:288 C.intestinalis:288

Q754D2              	100.00%		H2XM91              	100.00%
Bootstrap support for Q754D2 as seed ortholog is 100%.
Bootstrap support for H2XM91 as seed ortholog is 100%.

Group of orthologs #467. Best score 287 bits
Score difference with first non-orthologous sequence - A.gossypii:287 C.intestinalis:287

Q75E89              	100.00%		F6SSM8              	100.00%
Bootstrap support for Q75E89 as seed ortholog is 100%.
Bootstrap support for F6SSM8 as seed ortholog is 100%.

Group of orthologs #468. Best score 286 bits
Score difference with first non-orthologous sequence - A.gossypii:286 C.intestinalis:286

Q753V8              	100.00%		H2Y0A5              	100.00%
Bootstrap support for Q753V8 as seed ortholog is 100%.
Bootstrap support for H2Y0A5 as seed ortholog is 100%.

Group of orthologs #469. Best score 285 bits
Score difference with first non-orthologous sequence - A.gossypii:285 C.intestinalis:24

Q74ZE6              	100.00%		F6RKK1              	100.00%
Bootstrap support for Q74ZE6 as seed ortholog is 100%.
Bootstrap support for F6RKK1 as seed ortholog is 74%.
Alternative seed ortholog is H2XNC3 (24 bits away from this cluster)

Group of orthologs #470. Best score 285 bits
Score difference with first non-orthologous sequence - A.gossypii:285 C.intestinalis:285

Q750J7              	100.00%		F6RXZ8              	100.00%
Bootstrap support for Q750J7 as seed ortholog is 100%.
Bootstrap support for F6RXZ8 as seed ortholog is 100%.

Group of orthologs #471. Best score 285 bits
Score difference with first non-orthologous sequence - A.gossypii:285 C.intestinalis:285

Q759J2              	100.00%		F6RN60              	100.00%
Bootstrap support for Q759J2 as seed ortholog is 100%.
Bootstrap support for F6RN60 as seed ortholog is 100%.

Group of orthologs #472. Best score 285 bits
Score difference with first non-orthologous sequence - A.gossypii:285 C.intestinalis:285

Q756Y3              	100.00%		F6Z1E3              	100.00%
Bootstrap support for Q756Y3 as seed ortholog is 100%.
Bootstrap support for F6Z1E3 as seed ortholog is 100%.

Group of orthologs #473. Best score 285 bits
Score difference with first non-orthologous sequence - A.gossypii:193 C.intestinalis:285

Q74ZW3              	100.00%		H2XL44              	100.00%
Bootstrap support for Q74ZW3 as seed ortholog is 100%.
Bootstrap support for H2XL44 as seed ortholog is 100%.

Group of orthologs #474. Best score 284 bits
Score difference with first non-orthologous sequence - A.gossypii:284 C.intestinalis:284

Q74ZY9              	100.00%		F6Q041              	100.00%
Bootstrap support for Q74ZY9 as seed ortholog is 100%.
Bootstrap support for F6Q041 as seed ortholog is 100%.

Group of orthologs #475. Best score 284 bits
Score difference with first non-orthologous sequence - A.gossypii:284 C.intestinalis:284

Q756B7              	100.00%		F6U2U3              	100.00%
Bootstrap support for Q756B7 as seed ortholog is 100%.
Bootstrap support for F6U2U3 as seed ortholog is 100%.

Group of orthologs #476. Best score 284 bits
Score difference with first non-orthologous sequence - A.gossypii:284 C.intestinalis:284

Q75AJ9              	100.00%		F6SSW4              	100.00%
Bootstrap support for Q75AJ9 as seed ortholog is 100%.
Bootstrap support for F6SSW4 as seed ortholog is 100%.

Group of orthologs #477. Best score 284 bits
Score difference with first non-orthologous sequence - A.gossypii:284 C.intestinalis:206

Q75ET3              	100.00%		F6TFD0              	100.00%
Bootstrap support for Q75ET3 as seed ortholog is 100%.
Bootstrap support for F6TFD0 as seed ortholog is 100%.

Group of orthologs #478. Best score 284 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.intestinalis:230

Q75C99              	100.00%		F6Z8I3              	100.00%
Bootstrap support for Q75C99 as seed ortholog is 95%.
Bootstrap support for F6Z8I3 as seed ortholog is 100%.

Group of orthologs #479. Best score 283 bits
Score difference with first non-orthologous sequence - A.gossypii:283 C.intestinalis:283

Q759I9              	100.00%		F6U8B5              	100.00%
Bootstrap support for Q759I9 as seed ortholog is 100%.
Bootstrap support for F6U8B5 as seed ortholog is 100%.

Group of orthologs #480. Best score 283 bits
Score difference with first non-orthologous sequence - A.gossypii:283 C.intestinalis:283

Q75B75              	100.00%		F6WAW7              	100.00%
Bootstrap support for Q75B75 as seed ortholog is 100%.
Bootstrap support for F6WAW7 as seed ortholog is 100%.

Group of orthologs #481. Best score 283 bits
Score difference with first non-orthologous sequence - A.gossypii:283 C.intestinalis:283

Q759G6              	100.00%		F7B5P4              	100.00%
Bootstrap support for Q759G6 as seed ortholog is 100%.
Bootstrap support for F7B5P4 as seed ortholog is 100%.

Group of orthologs #482. Best score 283 bits
Score difference with first non-orthologous sequence - A.gossypii:283 C.intestinalis:283

Q759T6              	100.00%		H2XKA9              	100.00%
Bootstrap support for Q759T6 as seed ortholog is 100%.
Bootstrap support for H2XKA9 as seed ortholog is 100%.

Group of orthologs #483. Best score 282 bits
Score difference with first non-orthologous sequence - A.gossypii:183 C.intestinalis:230

Q750E3              	100.00%		F6Z9I2              	100.00%
Bootstrap support for Q750E3 as seed ortholog is 100%.
Bootstrap support for F6Z9I2 as seed ortholog is 100%.

Group of orthologs #484. Best score 282 bits
Score difference with first non-orthologous sequence - A.gossypii:282 C.intestinalis:282

Q75A87              	100.00%		F6YSX7              	100.00%
Bootstrap support for Q75A87 as seed ortholog is 100%.
Bootstrap support for F6YSX7 as seed ortholog is 100%.

Group of orthologs #485. Best score 281 bits
Score difference with first non-orthologous sequence - A.gossypii:281 C.intestinalis:130

Q75AC3              	100.00%		K9J6P5              	100.00%
                    	       		F7AYD9              	66.93%
Bootstrap support for Q75AC3 as seed ortholog is 100%.
Bootstrap support for K9J6P5 as seed ortholog is 99%.

Group of orthologs #486. Best score 281 bits
Score difference with first non-orthologous sequence - A.gossypii:206 C.intestinalis:281

Q759N3              	100.00%		F6SIX8              	100.00%
Bootstrap support for Q759N3 as seed ortholog is 100%.
Bootstrap support for F6SIX8 as seed ortholog is 100%.

Group of orthologs #487. Best score 280 bits
Score difference with first non-orthologous sequence - A.gossypii:235 C.intestinalis:280

Q757Y2              	100.00%		F6QHP8              	100.00%
Bootstrap support for Q757Y2 as seed ortholog is 100%.
Bootstrap support for F6QHP8 as seed ortholog is 100%.

Group of orthologs #488. Best score 280 bits
Score difference with first non-orthologous sequence - A.gossypii:280 C.intestinalis:280

Q75CY6              	100.00%		F6SS61              	100.00%
Bootstrap support for Q75CY6 as seed ortholog is 100%.
Bootstrap support for F6SS61 as seed ortholog is 100%.

Group of orthologs #489. Best score 280 bits
Score difference with first non-orthologous sequence - A.gossypii:280 C.intestinalis:280

Q751E6              	100.00%		F6Z672              	100.00%
Bootstrap support for Q751E6 as seed ortholog is 100%.
Bootstrap support for F6Z672 as seed ortholog is 100%.

Group of orthologs #490. Best score 279 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.intestinalis:193

Q756S0              	100.00%		H2XK79              	100.00%
                    	       		H2XS68              	87.31%
                    	       		H2XVV3              	23.22%
Bootstrap support for Q756S0 as seed ortholog is 100%.
Bootstrap support for H2XK79 as seed ortholog is 100%.

Group of orthologs #491. Best score 279 bits
Score difference with first non-orthologous sequence - A.gossypii:279 C.intestinalis:279

Q750H0              	100.00%		F6TDD6              	100.00%
Bootstrap support for Q750H0 as seed ortholog is 100%.
Bootstrap support for F6TDD6 as seed ortholog is 100%.

Group of orthologs #492. Best score 279 bits
Score difference with first non-orthologous sequence - A.gossypii:279 C.intestinalis:279

Q754Z6              	100.00%		F6WBA4              	100.00%
Bootstrap support for Q754Z6 as seed ortholog is 100%.
Bootstrap support for F6WBA4 as seed ortholog is 100%.

Group of orthologs #493. Best score 279 bits
Score difference with first non-orthologous sequence - A.gossypii:279 C.intestinalis:279

Q75ER1              	100.00%		F6YA95              	100.00%
Bootstrap support for Q75ER1 as seed ortholog is 100%.
Bootstrap support for F6YA95 as seed ortholog is 100%.

Group of orthologs #494. Best score 278 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.intestinalis:127

Q754J2              	100.00%		F6S0X0              	100.00%
Bootstrap support for Q754J2 as seed ortholog is 96%.
Bootstrap support for F6S0X0 as seed ortholog is 99%.

Group of orthologs #495. Best score 278 bits
Score difference with first non-orthologous sequence - A.gossypii:195 C.intestinalis:169

Q74ZA9              	100.00%		F6ZKW1              	100.00%
Bootstrap support for Q74ZA9 as seed ortholog is 100%.
Bootstrap support for F6ZKW1 as seed ortholog is 100%.

Group of orthologs #496. Best score 278 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.intestinalis:188

Q753G9              	100.00%		F7AEF7              	100.00%
Bootstrap support for Q753G9 as seed ortholog is 88%.
Bootstrap support for F7AEF7 as seed ortholog is 100%.

Group of orthologs #497. Best score 277 bits
Score difference with first non-orthologous sequence - A.gossypii:148 C.intestinalis:277

Q759E2              	100.00%		F6R4B5              	100.00%
Bootstrap support for Q759E2 as seed ortholog is 99%.
Bootstrap support for F6R4B5 as seed ortholog is 100%.

Group of orthologs #498. Best score 277 bits
Score difference with first non-orthologous sequence - A.gossypii:277 C.intestinalis:277

Q75CI9              	100.00%		F6U9X5              	100.00%
Bootstrap support for Q75CI9 as seed ortholog is 100%.
Bootstrap support for F6U9X5 as seed ortholog is 100%.

Group of orthologs #499. Best score 277 bits
Score difference with first non-orthologous sequence - A.gossypii:277 C.intestinalis:277

Q756X5              	100.00%		H2XLN7              	100.00%
Bootstrap support for Q756X5 as seed ortholog is 100%.
Bootstrap support for H2XLN7 as seed ortholog is 100%.

Group of orthologs #500. Best score 276 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.intestinalis:89

Q74ZY1              	100.00%		F6UEG1              	100.00%
                    	       		F6RSU8              	8.11%
Bootstrap support for Q74ZY1 as seed ortholog is 99%.
Bootstrap support for F6UEG1 as seed ortholog is 97%.

Group of orthologs #501. Best score 276 bits
Score difference with first non-orthologous sequence - A.gossypii:276 C.intestinalis:161

Q74ZR4              	100.00%		F6XPZ4              	100.00%
Bootstrap support for Q74ZR4 as seed ortholog is 100%.
Bootstrap support for F6XPZ4 as seed ortholog is 100%.

Group of orthologs #502. Best score 276 bits
Score difference with first non-orthologous sequence - A.gossypii:1 C.intestinalis:276

Q75AM0              	100.00%		H2XVM9              	100.00%
Bootstrap support for Q75AM0 as seed ortholog is 80%.
Bootstrap support for H2XVM9 as seed ortholog is 100%.

Group of orthologs #503. Best score 275 bits
Score difference with first non-orthologous sequence - A.gossypii:230 C.intestinalis:275

Q757R6              	100.00%		F6VXM8              	100.00%
Bootstrap support for Q757R6 as seed ortholog is 100%.
Bootstrap support for F6VXM8 as seed ortholog is 100%.

Group of orthologs #504. Best score 275 bits
Score difference with first non-orthologous sequence - A.gossypii:275 C.intestinalis:275

Q75CE1              	100.00%		F6UA87              	100.00%
Bootstrap support for Q75CE1 as seed ortholog is 100%.
Bootstrap support for F6UA87 as seed ortholog is 100%.

Group of orthologs #505. Best score 275 bits
Score difference with first non-orthologous sequence - A.gossypii:275 C.intestinalis:275

Q758L6              	100.00%		H2XVQ9              	100.00%
Bootstrap support for Q758L6 as seed ortholog is 100%.
Bootstrap support for H2XVQ9 as seed ortholog is 100%.

Group of orthologs #506. Best score 274 bits
Score difference with first non-orthologous sequence - A.gossypii:274 C.intestinalis:274

Q75AN1              	100.00%		H2Y395              	100.00%
Q758K6              	9.20%		
Bootstrap support for Q75AN1 as seed ortholog is 100%.
Bootstrap support for H2Y395 as seed ortholog is 100%.

Group of orthologs #507. Best score 274 bits
Score difference with first non-orthologous sequence - A.gossypii:274 C.intestinalis:107

Q75B78              	100.00%		F6TDZ5              	100.00%
Bootstrap support for Q75B78 as seed ortholog is 100%.
Bootstrap support for F6TDZ5 as seed ortholog is 97%.

Group of orthologs #508. Best score 273 bits
Score difference with first non-orthologous sequence - A.gossypii:273 C.intestinalis:273

Q75EF0              	100.00%		F6SBF1              	100.00%
Bootstrap support for Q75EF0 as seed ortholog is 100%.
Bootstrap support for F6SBF1 as seed ortholog is 100%.

Group of orthologs #509. Best score 273 bits
Score difference with first non-orthologous sequence - A.gossypii:273 C.intestinalis:273

Q751D8              	100.00%		F6Z0U1              	100.00%
Bootstrap support for Q751D8 as seed ortholog is 100%.
Bootstrap support for F6Z0U1 as seed ortholog is 100%.

Group of orthologs #510. Best score 273 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.intestinalis:273

Q75EJ6              	100.00%		F6X4N7              	100.00%
Bootstrap support for Q75EJ6 as seed ortholog is 96%.
Bootstrap support for F6X4N7 as seed ortholog is 100%.

Group of orthologs #511. Best score 272 bits
Score difference with first non-orthologous sequence - A.gossypii:272 C.intestinalis:272

Q75B12              	100.00%		F6W318              	100.00%
Bootstrap support for Q75B12 as seed ortholog is 100%.
Bootstrap support for F6W318 as seed ortholog is 100%.

Group of orthologs #512. Best score 271 bits
Score difference with first non-orthologous sequence - A.gossypii:271 C.intestinalis:271

Q755C1              	100.00%		F6Q5D4              	100.00%
Bootstrap support for Q755C1 as seed ortholog is 100%.
Bootstrap support for F6Q5D4 as seed ortholog is 100%.

Group of orthologs #513. Best score 270 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.intestinalis:54

Q8J1G4              	100.00%		F6XPL3              	100.00%
Q8J1G7              	100.00%		F7B875              	100.00%
                    	       		F7AAZ2              	14.64%
Bootstrap support for Q8J1G4 as seed ortholog is 94%.
Bootstrap support for Q8J1G7 as seed ortholog is 85%.
Bootstrap support for F6XPL3 as seed ortholog is 89%.
Bootstrap support for F7B875 as seed ortholog is 85%.

Group of orthologs #514. Best score 270 bits
Score difference with first non-orthologous sequence - A.gossypii:270 C.intestinalis:270

Q755D9              	100.00%		F6UPC7              	100.00%
Bootstrap support for Q755D9 as seed ortholog is 100%.
Bootstrap support for F6UPC7 as seed ortholog is 100%.

Group of orthologs #515. Best score 270 bits
Score difference with first non-orthologous sequence - A.gossypii:270 C.intestinalis:270

Q75DU1              	100.00%		F6TQ69              	100.00%
Bootstrap support for Q75DU1 as seed ortholog is 100%.
Bootstrap support for F6TQ69 as seed ortholog is 100%.

Group of orthologs #516. Best score 270 bits
Score difference with first non-orthologous sequence - A.gossypii:36 C.intestinalis:47

Q75ES8              	100.00%		F7AQE7              	100.00%
Bootstrap support for Q75ES8 as seed ortholog is 84%.
Bootstrap support for F7AQE7 as seed ortholog is 93%.

Group of orthologs #517. Best score 270 bits
Score difference with first non-orthologous sequence - A.gossypii:270 C.intestinalis:270

Q75CQ9              	100.00%		H2XTB0              	100.00%
Bootstrap support for Q75CQ9 as seed ortholog is 100%.
Bootstrap support for H2XTB0 as seed ortholog is 100%.

Group of orthologs #518. Best score 269 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.intestinalis:20

Q9HF56              	100.00%		Q7YT79              	100.00%
                    	       		F6PNQ0              	52.76%
                    	       		F6PNI9              	33.86%
                    	       		Q7YT74              	10.24%
Bootstrap support for Q9HF56 as seed ortholog is 99%.
Bootstrap support for Q7YT79 as seed ortholog is 77%.

Group of orthologs #519. Best score 268 bits
Score difference with first non-orthologous sequence - A.gossypii:268 C.intestinalis:268

Q74ZQ3              	100.00%		F6ZCS4              	100.00%
Bootstrap support for Q74ZQ3 as seed ortholog is 100%.
Bootstrap support for F6ZCS4 as seed ortholog is 100%.

Group of orthologs #520. Best score 268 bits
Score difference with first non-orthologous sequence - A.gossypii:268 C.intestinalis:268

Q753P1              	100.00%		F7A5R9              	100.00%
Bootstrap support for Q753P1 as seed ortholog is 100%.
Bootstrap support for F7A5R9 as seed ortholog is 100%.

Group of orthologs #521. Best score 267 bits
Score difference with first non-orthologous sequence - A.gossypii:267 C.intestinalis:267

Q75CR2              	100.00%		F6X5E1              	100.00%
                    	       		F6Q8W5              	33.71%
                    	       		F6SKF5              	11.56%
                    	       		H2Y2S0              	10.84%
                    	       		F6QCF9              	8.94%
Bootstrap support for Q75CR2 as seed ortholog is 100%.
Bootstrap support for F6X5E1 as seed ortholog is 100%.

Group of orthologs #522. Best score 267 bits
Score difference with first non-orthologous sequence - A.gossypii:166 C.intestinalis:267

Q75BY6              	100.00%		F6WRV9              	100.00%
                    	       		F6YHL8              	36.76%
Bootstrap support for Q75BY6 as seed ortholog is 99%.
Bootstrap support for F6WRV9 as seed ortholog is 100%.

Group of orthologs #523. Best score 267 bits
Score difference with first non-orthologous sequence - A.gossypii:267 C.intestinalis:158

Q75ED1              	100.00%		F7A2K6              	100.00%
                    	       		F6V828              	5.54%
Bootstrap support for Q75ED1 as seed ortholog is 100%.
Bootstrap support for F7A2K6 as seed ortholog is 99%.

Group of orthologs #524. Best score 267 bits
Score difference with first non-orthologous sequence - A.gossypii:267 C.intestinalis:267

Q755S0              	100.00%		F7A1R5              	100.00%
Bootstrap support for Q755S0 as seed ortholog is 100%.
Bootstrap support for F7A1R5 as seed ortholog is 100%.

Group of orthologs #525. Best score 266 bits
Score difference with first non-orthologous sequence - A.gossypii:136 C.intestinalis:72

Q755T4              	100.00%		F6XCQ7              	100.00%
Bootstrap support for Q755T4 as seed ortholog is 100%.
Bootstrap support for F6XCQ7 as seed ortholog is 99%.

Group of orthologs #526. Best score 266 bits
Score difference with first non-orthologous sequence - A.gossypii:266 C.intestinalis:266

Q75D59              	100.00%		F7BLS5              	100.00%
Bootstrap support for Q75D59 as seed ortholog is 100%.
Bootstrap support for F7BLS5 as seed ortholog is 100%.

Group of orthologs #527. Best score 265 bits
Score difference with first non-orthologous sequence - A.gossypii:265 C.intestinalis:191

Q75CU3              	100.00%		F6U4H3              	100.00%
                    	       		F7B684              	11.71%
Bootstrap support for Q75CU3 as seed ortholog is 100%.
Bootstrap support for F6U4H3 as seed ortholog is 99%.

Group of orthologs #528. Best score 264 bits
Score difference with first non-orthologous sequence - A.gossypii:151 C.intestinalis:95

Q75BM2              	100.00%		F6XT42              	100.00%
Bootstrap support for Q75BM2 as seed ortholog is 99%.
Bootstrap support for F6XT42 as seed ortholog is 98%.

Group of orthologs #529. Best score 264 bits
Score difference with first non-orthologous sequence - A.gossypii:264 C.intestinalis:264

Q75CK1              	100.00%		F6YTX7              	100.00%
Bootstrap support for Q75CK1 as seed ortholog is 100%.
Bootstrap support for F6YTX7 as seed ortholog is 100%.

Group of orthologs #530. Best score 264 bits
Score difference with first non-orthologous sequence - A.gossypii:264 C.intestinalis:264

Q75AB5              	100.00%		F7B5B2              	100.00%
Bootstrap support for Q75AB5 as seed ortholog is 100%.
Bootstrap support for F7B5B2 as seed ortholog is 100%.

Group of orthologs #531. Best score 264 bits
Score difference with first non-orthologous sequence - A.gossypii:264 C.intestinalis:186

Q757A9              	100.00%		H2XZQ0              	100.00%
Bootstrap support for Q757A9 as seed ortholog is 100%.
Bootstrap support for H2XZQ0 as seed ortholog is 100%.

Group of orthologs #532. Best score 263 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.intestinalis:60

Q75D41              	100.00%		Q7YT82              	100.00%
Q9HF54              	33.75%		
Bootstrap support for Q75D41 as seed ortholog is 99%.
Bootstrap support for Q7YT82 as seed ortholog is 99%.

Group of orthologs #533. Best score 263 bits
Score difference with first non-orthologous sequence - A.gossypii:263 C.intestinalis:263

Q75D62              	100.00%		F6XDT3              	100.00%
Bootstrap support for Q75D62 as seed ortholog is 100%.
Bootstrap support for F6XDT3 as seed ortholog is 100%.

Group of orthologs #534. Best score 262 bits
Score difference with first non-orthologous sequence - A.gossypii:262 C.intestinalis:93

Q75C44              	100.00%		F6SZT6              	100.00%
Q75C14              	10.11%		F6V5Q8              	18.63%
                    	       		F6X923              	9.76%
                    	       		H2XYZ3              	9.24%
Bootstrap support for Q75C44 as seed ortholog is 100%.
Bootstrap support for F6SZT6 as seed ortholog is 94%.

Group of orthologs #535. Best score 262 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.intestinalis:59

Q751V1              	100.00%		H2XZZ6              	100.00%
                    	       		F6W1F7              	5.04%
Bootstrap support for Q751V1 as seed ortholog is 99%.
Bootstrap support for H2XZZ6 as seed ortholog is 94%.

Group of orthologs #536. Best score 262 bits
Score difference with first non-orthologous sequence - A.gossypii:262 C.intestinalis:262

Q750Y8              	100.00%		F6RID7              	100.00%
Bootstrap support for Q750Y8 as seed ortholog is 100%.
Bootstrap support for F6RID7 as seed ortholog is 100%.

Group of orthologs #537. Best score 262 bits
Score difference with first non-orthologous sequence - A.gossypii:262 C.intestinalis:262

Q75D52              	100.00%		F6Q8V8              	100.00%
Bootstrap support for Q75D52 as seed ortholog is 100%.
Bootstrap support for F6Q8V8 as seed ortholog is 100%.

Group of orthologs #538. Best score 262 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.intestinalis:66

Q751R9              	100.00%		F6YBW7              	100.00%
Bootstrap support for Q751R9 as seed ortholog is 100%.
Bootstrap support for F6YBW7 as seed ortholog is 95%.

Group of orthologs #539. Best score 262 bits
Score difference with first non-orthologous sequence - A.gossypii:34 C.intestinalis:36

Q75BH1              	100.00%		F7AZI8              	100.00%
Bootstrap support for Q75BH1 as seed ortholog is 82%.
Bootstrap support for F7AZI8 as seed ortholog is 86%.

Group of orthologs #540. Best score 262 bits
Score difference with first non-orthologous sequence - A.gossypii:262 C.intestinalis:168

Q756E4              	100.00%		H2XWR9              	100.00%
Bootstrap support for Q756E4 as seed ortholog is 100%.
Bootstrap support for H2XWR9 as seed ortholog is 99%.

Group of orthologs #541. Best score 261 bits
Score difference with first non-orthologous sequence - A.gossypii:261 C.intestinalis:261

Q74Z31              	100.00%		F6Q4K7              	100.00%
Bootstrap support for Q74Z31 as seed ortholog is 100%.
Bootstrap support for F6Q4K7 as seed ortholog is 100%.

Group of orthologs #542. Best score 261 bits
Score difference with first non-orthologous sequence - A.gossypii:261 C.intestinalis:179

Q75A91              	100.00%		F6U3Q1              	100.00%
Bootstrap support for Q75A91 as seed ortholog is 100%.
Bootstrap support for F6U3Q1 as seed ortholog is 100%.

Group of orthologs #543. Best score 261 bits
Score difference with first non-orthologous sequence - A.gossypii:261 C.intestinalis:261

Q75EL3              	100.00%		F6TFE2              	100.00%
Bootstrap support for Q75EL3 as seed ortholog is 100%.
Bootstrap support for F6TFE2 as seed ortholog is 100%.

Group of orthologs #544. Best score 261 bits
Score difference with first non-orthologous sequence - A.gossypii:261 C.intestinalis:209

Q758D0              	100.00%		F7BDV2              	100.00%
Bootstrap support for Q758D0 as seed ortholog is 100%.
Bootstrap support for F7BDV2 as seed ortholog is 100%.

Group of orthologs #545. Best score 261 bits
Score difference with first non-orthologous sequence - A.gossypii:261 C.intestinalis:261

Q75DR1              	100.00%		F7BQ53              	100.00%
Bootstrap support for Q75DR1 as seed ortholog is 100%.
Bootstrap support for F7BQ53 as seed ortholog is 100%.

Group of orthologs #546. Best score 260 bits
Score difference with first non-orthologous sequence - A.gossypii:149 C.intestinalis:260

Q755A7              	100.00%		F6Y7E9              	100.00%
Bootstrap support for Q755A7 as seed ortholog is 100%.
Bootstrap support for F6Y7E9 as seed ortholog is 100%.

Group of orthologs #547. Best score 260 bits
Score difference with first non-orthologous sequence - A.gossypii:203 C.intestinalis:260

Q75EG2              	100.00%		H2XVD5              	100.00%
Bootstrap support for Q75EG2 as seed ortholog is 100%.
Bootstrap support for H2XVD5 as seed ortholog is 100%.

Group of orthologs #548. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:214 C.intestinalis:171

Q75C20              	100.00%		F7AW67              	100.00%
                    	       		H2XZV4              	14.66%
Bootstrap support for Q75C20 as seed ortholog is 100%.
Bootstrap support for F7AW67 as seed ortholog is 99%.

Group of orthologs #549. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:259 C.intestinalis:109

Q75BY4              	100.00%		F6PJM3              	100.00%
Bootstrap support for Q75BY4 as seed ortholog is 100%.
Bootstrap support for F6PJM3 as seed ortholog is 97%.

Group of orthologs #550. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:259 C.intestinalis:259

Q75A48              	100.00%		F6SNM2              	100.00%
Bootstrap support for Q75A48 as seed ortholog is 100%.
Bootstrap support for F6SNM2 as seed ortholog is 100%.

Group of orthologs #551. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:259 C.intestinalis:259

Q755W8              	100.00%		F6U602              	100.00%
Bootstrap support for Q755W8 as seed ortholog is 100%.
Bootstrap support for F6U602 as seed ortholog is 100%.

Group of orthologs #552. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.intestinalis:62

Q759X8              	100.00%		F6UK45              	100.00%
Bootstrap support for Q759X8 as seed ortholog is 95%.
Bootstrap support for F6UK45 as seed ortholog is 90%.

Group of orthologs #553. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:259 C.intestinalis:25

Q75E90              	100.00%		F6UK82              	100.00%
Bootstrap support for Q75E90 as seed ortholog is 100%.
Bootstrap support for F6UK82 as seed ortholog is 77%.

Group of orthologs #554. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:259 C.intestinalis:259

Q75B99              	100.00%		F6YX67              	100.00%
Bootstrap support for Q75B99 as seed ortholog is 100%.
Bootstrap support for F6YX67 as seed ortholog is 100%.

Group of orthologs #555. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.intestinalis:259

Q758X7              	100.00%		F6ZRB6              	100.00%
Bootstrap support for Q758X7 as seed ortholog is 99%.
Bootstrap support for F6ZRB6 as seed ortholog is 100%.

Group of orthologs #556. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:259 C.intestinalis:259

Q75EB1              	100.00%		H2XPV7              	100.00%
Bootstrap support for Q75EB1 as seed ortholog is 100%.
Bootstrap support for H2XPV7 as seed ortholog is 100%.

Group of orthologs #557. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:259 C.intestinalis:259

Q759R5              	100.00%		H2XYL3              	100.00%
Bootstrap support for Q759R5 as seed ortholog is 100%.
Bootstrap support for H2XYL3 as seed ortholog is 100%.

Group of orthologs #558. Best score 257 bits
Score difference with first non-orthologous sequence - A.gossypii:257 C.intestinalis:257

Q754D7              	100.00%		H2XUA5              	100.00%
Bootstrap support for Q754D7 as seed ortholog is 100%.
Bootstrap support for H2XUA5 as seed ortholog is 100%.

Group of orthologs #559. Best score 256 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.intestinalis:28

Q756T8              	100.00%		F6VNW9              	100.00%
Bootstrap support for Q756T8 as seed ortholog is 99%.
Bootstrap support for F6VNW9 as seed ortholog is 73%.
Alternative seed ortholog is F6ZBI9 (28 bits away from this cluster)

Group of orthologs #560. Best score 254 bits
Score difference with first non-orthologous sequence - A.gossypii:254 C.intestinalis:254

Q74ZB1              	100.00%		F6WH82              	100.00%
Bootstrap support for Q74ZB1 as seed ortholog is 100%.
Bootstrap support for F6WH82 as seed ortholog is 100%.

Group of orthologs #561. Best score 254 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.intestinalis:88

Q74ZL1              	100.00%		F6XGG4              	100.00%
Bootstrap support for Q74ZL1 as seed ortholog is 100%.
Bootstrap support for F6XGG4 as seed ortholog is 99%.

Group of orthologs #562. Best score 254 bits
Score difference with first non-orthologous sequence - A.gossypii:254 C.intestinalis:254

Q759A8              	100.00%		F6V6M0              	100.00%
Bootstrap support for Q759A8 as seed ortholog is 100%.
Bootstrap support for F6V6M0 as seed ortholog is 100%.

Group of orthologs #563. Best score 254 bits
Score difference with first non-orthologous sequence - A.gossypii:153 C.intestinalis:1

Q756T0              	100.00%		F6Y5B7              	100.00%
Bootstrap support for Q756T0 as seed ortholog is 100%.
Bootstrap support for F6Y5B7 as seed ortholog is 51%.
Alternative seed ortholog is F6Y4V4 (1 bits away from this cluster)

Group of orthologs #564. Best score 253 bits
Score difference with first non-orthologous sequence - A.gossypii:253 C.intestinalis:129

Q75CZ3              	100.00%		H2Y2K6              	100.00%
                    	       		F6W2S7              	10.37%
Bootstrap support for Q75CZ3 as seed ortholog is 100%.
Bootstrap support for H2Y2K6 as seed ortholog is 99%.

Group of orthologs #565. Best score 253 bits
Score difference with first non-orthologous sequence - A.gossypii:253 C.intestinalis:70

Q756F8              	100.00%		F6SKI3              	100.00%
Bootstrap support for Q756F8 as seed ortholog is 100%.
Bootstrap support for F6SKI3 as seed ortholog is 90%.

Group of orthologs #566. Best score 253 bits
Score difference with first non-orthologous sequence - A.gossypii:253 C.intestinalis:253

Q75CE4              	100.00%		H2XNG1              	100.00%
Bootstrap support for Q75CE4 as seed ortholog is 100%.
Bootstrap support for H2XNG1 as seed ortholog is 100%.

Group of orthologs #567. Best score 252 bits
Score difference with first non-orthologous sequence - A.gossypii:252 C.intestinalis:252

Q753N3              	100.00%		F6YLI3              	100.00%
                    	       		H2XKD1              	22.88%
                    	       		H2XUD0              	21.33%
Bootstrap support for Q753N3 as seed ortholog is 100%.
Bootstrap support for F6YLI3 as seed ortholog is 100%.

Group of orthologs #568. Best score 252 bits
Score difference with first non-orthologous sequence - A.gossypii:252 C.intestinalis:89

Q756A9              	100.00%		F7ABR6              	100.00%
                    	       		F6ZI02              	24.70%
                    	       		H2XY21              	20.43%
Bootstrap support for Q756A9 as seed ortholog is 100%.
Bootstrap support for F7ABR6 as seed ortholog is 95%.

Group of orthologs #569. Best score 252 bits
Score difference with first non-orthologous sequence - A.gossypii:252 C.intestinalis:252

Q75F07              	100.00%		F6Q601              	100.00%
Bootstrap support for Q75F07 as seed ortholog is 100%.
Bootstrap support for F6Q601 as seed ortholog is 100%.

Group of orthologs #570. Best score 251 bits
Score difference with first non-orthologous sequence - A.gossypii:251 C.intestinalis:251

Q756F9              	100.00%		Q68A28              	100.00%
                    	       		F6QQZ3              	14.84%
                    	       		H2XU41              	5.16%
Bootstrap support for Q756F9 as seed ortholog is 100%.
Bootstrap support for Q68A28 as seed ortholog is 100%.

Group of orthologs #571. Best score 251 bits
Score difference with first non-orthologous sequence - A.gossypii:251 C.intestinalis:251

Q758S7              	100.00%		F6SNL0              	100.00%
Bootstrap support for Q758S7 as seed ortholog is 100%.
Bootstrap support for F6SNL0 as seed ortholog is 100%.

Group of orthologs #572. Best score 251 bits
Score difference with first non-orthologous sequence - A.gossypii:251 C.intestinalis:207

Q751A8              	100.00%		F6VUL9              	100.00%
Bootstrap support for Q751A8 as seed ortholog is 100%.
Bootstrap support for F6VUL9 as seed ortholog is 100%.

Group of orthologs #573. Best score 251 bits
Score difference with first non-orthologous sequence - A.gossypii:251 C.intestinalis:251

Q757J3              	100.00%		F6UJD6              	100.00%
Bootstrap support for Q757J3 as seed ortholog is 100%.
Bootstrap support for F6UJD6 as seed ortholog is 100%.

Group of orthologs #574. Best score 251 bits
Score difference with first non-orthologous sequence - A.gossypii:251 C.intestinalis:199

Q75CB5              	100.00%		F6XWE7              	100.00%
Bootstrap support for Q75CB5 as seed ortholog is 100%.
Bootstrap support for F6XWE7 as seed ortholog is 99%.

Group of orthologs #575. Best score 251 bits
Score difference with first non-orthologous sequence - A.gossypii:251 C.intestinalis:251

Q750R4              	100.00%		F7BKD9              	100.00%
Bootstrap support for Q750R4 as seed ortholog is 100%.
Bootstrap support for F7BKD9 as seed ortholog is 100%.

Group of orthologs #576. Best score 250 bits
Score difference with first non-orthologous sequence - A.gossypii:250 C.intestinalis:177

Q750D2              	100.00%		F6SBG8              	100.00%
Bootstrap support for Q750D2 as seed ortholog is 100%.
Bootstrap support for F6SBG8 as seed ortholog is 99%.

Group of orthologs #577. Best score 250 bits
Score difference with first non-orthologous sequence - A.gossypii:250 C.intestinalis:250

Q757W4              	100.00%		H2XQ81              	100.00%
Bootstrap support for Q757W4 as seed ortholog is 100%.
Bootstrap support for H2XQ81 as seed ortholog is 100%.

Group of orthologs #578. Best score 249 bits
Score difference with first non-orthologous sequence - A.gossypii:249 C.intestinalis:143

Q74ZU7              	100.00%		H2XT98              	100.00%
Q75BP5              	13.93%		
Bootstrap support for Q74ZU7 as seed ortholog is 100%.
Bootstrap support for H2XT98 as seed ortholog is 100%.

Group of orthologs #579. Best score 249 bits
Score difference with first non-orthologous sequence - A.gossypii:249 C.intestinalis:249

Q75F45              	100.00%		F6STU7              	100.00%
Bootstrap support for Q75F45 as seed ortholog is 100%.
Bootstrap support for F6STU7 as seed ortholog is 100%.

Group of orthologs #580. Best score 249 bits
Score difference with first non-orthologous sequence - A.gossypii:141 C.intestinalis:160

Q75C48              	100.00%		F6VKA0              	100.00%
Bootstrap support for Q75C48 as seed ortholog is 99%.
Bootstrap support for F6VKA0 as seed ortholog is 99%.

Group of orthologs #581. Best score 249 bits
Score difference with first non-orthologous sequence - A.gossypii:249 C.intestinalis:249

Q750Q9              	100.00%		H2XWU7              	100.00%
Bootstrap support for Q750Q9 as seed ortholog is 100%.
Bootstrap support for H2XWU7 as seed ortholog is 100%.

Group of orthologs #582. Best score 248 bits
Score difference with first non-orthologous sequence - A.gossypii:248 C.intestinalis:248

Q756I1              	100.00%		F6TX35              	100.00%
Bootstrap support for Q756I1 as seed ortholog is 100%.
Bootstrap support for F6TX35 as seed ortholog is 100%.

Group of orthologs #583. Best score 247 bits
Score difference with first non-orthologous sequence - A.gossypii:247 C.intestinalis:247

Q750D0              	100.00%		H2XM50              	100.00%
                    	       		F6R614              	42.07%
Bootstrap support for Q750D0 as seed ortholog is 100%.
Bootstrap support for H2XM50 as seed ortholog is 100%.

Group of orthologs #584. Best score 247 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.intestinalis:64

Q75ES0              	100.00%		F6Z9D3              	100.00%
                    	       		F7B9D6              	9.31%
Bootstrap support for Q75ES0 as seed ortholog is 94%.
Bootstrap support for F6Z9D3 as seed ortholog is 96%.

Group of orthologs #585. Best score 247 bits
Score difference with first non-orthologous sequence - A.gossypii:45 C.intestinalis:20

Q753W7              	100.00%		F6R4H2              	100.00%
Bootstrap support for Q753W7 as seed ortholog is 88%.
Bootstrap support for F6R4H2 as seed ortholog is 72%.
Alternative seed ortholog is F6ZSR8 (20 bits away from this cluster)

Group of orthologs #586. Best score 246 bits
Score difference with first non-orthologous sequence - A.gossypii:246 C.intestinalis:246

Q75C92              	100.00%		F6Y1R8              	100.00%
                    	       		F6ZK74              	14.77%
                    	       		F7A0G1              	13.00%
                    	       		F6S6B2              	9.62%
Bootstrap support for Q75C92 as seed ortholog is 100%.
Bootstrap support for F6Y1R8 as seed ortholog is 100%.

Group of orthologs #587. Best score 246 bits
Score difference with first non-orthologous sequence - A.gossypii:246 C.intestinalis:246

Q750L2              	100.00%		F6QAP0              	100.00%
Bootstrap support for Q750L2 as seed ortholog is 100%.
Bootstrap support for F6QAP0 as seed ortholog is 100%.

Group of orthologs #588. Best score 246 bits
Score difference with first non-orthologous sequence - A.gossypii:246 C.intestinalis:246

Q751P4              	100.00%		F6R2U8              	100.00%
Bootstrap support for Q751P4 as seed ortholog is 100%.
Bootstrap support for F6R2U8 as seed ortholog is 100%.

Group of orthologs #589. Best score 246 bits
Score difference with first non-orthologous sequence - A.gossypii:246 C.intestinalis:246

Q751K4              	100.00%		F7AGW4              	100.00%
Bootstrap support for Q751K4 as seed ortholog is 100%.
Bootstrap support for F7AGW4 as seed ortholog is 100%.

Group of orthologs #590. Best score 245 bits
Score difference with first non-orthologous sequence - A.gossypii:245 C.intestinalis:72

Q750W6              	100.00%		F6QXH6              	100.00%
                    	       		F6UAF0              	14.58%
Bootstrap support for Q750W6 as seed ortholog is 100%.
Bootstrap support for F6QXH6 as seed ortholog is 99%.

Group of orthologs #591. Best score 245 bits
Score difference with first non-orthologous sequence - A.gossypii:245 C.intestinalis:120

Q75D79              	100.00%		F6XUD5              	100.00%
                    	       		F6V9F0              	40.40%
Bootstrap support for Q75D79 as seed ortholog is 100%.
Bootstrap support for F6XUD5 as seed ortholog is 99%.

Group of orthologs #592. Best score 245 bits
Score difference with first non-orthologous sequence - A.gossypii:245 C.intestinalis:154

Q751F6              	100.00%		F6W170              	100.00%
Bootstrap support for Q751F6 as seed ortholog is 100%.
Bootstrap support for F6W170 as seed ortholog is 99%.

Group of orthologs #593. Best score 245 bits
Score difference with first non-orthologous sequence - A.gossypii:245 C.intestinalis:245

Q00063              	100.00%		F6X9L5              	100.00%
Bootstrap support for Q00063 as seed ortholog is 100%.
Bootstrap support for F6X9L5 as seed ortholog is 100%.

Group of orthologs #594. Best score 244 bits
Score difference with first non-orthologous sequence - A.gossypii:244 C.intestinalis:244

Q75EE9              	100.00%		F6VTZ3              	100.00%
Bootstrap support for Q75EE9 as seed ortholog is 100%.
Bootstrap support for F6VTZ3 as seed ortholog is 100%.

Group of orthologs #595. Best score 244 bits
Score difference with first non-orthologous sequence - A.gossypii:244 C.intestinalis:244

Q75B74              	100.00%		F7ABF6              	100.00%
Bootstrap support for Q75B74 as seed ortholog is 100%.
Bootstrap support for F7ABF6 as seed ortholog is 100%.

Group of orthologs #596. Best score 243 bits
Score difference with first non-orthologous sequence - A.gossypii:243 C.intestinalis:243

Q751A3              	100.00%		F6V8N9              	100.00%
Bootstrap support for Q751A3 as seed ortholog is 100%.
Bootstrap support for F6V8N9 as seed ortholog is 100%.

Group of orthologs #597. Best score 243 bits
Score difference with first non-orthologous sequence - A.gossypii:243 C.intestinalis:243

Q755X1              	100.00%		F6TRN8              	100.00%
Bootstrap support for Q755X1 as seed ortholog is 100%.
Bootstrap support for F6TRN8 as seed ortholog is 100%.

Group of orthologs #598. Best score 243 bits
Score difference with first non-orthologous sequence - A.gossypii:122 C.intestinalis:243

Q74ZN0              	100.00%		F6WHS8              	100.00%
Bootstrap support for Q74ZN0 as seed ortholog is 99%.
Bootstrap support for F6WHS8 as seed ortholog is 100%.

Group of orthologs #599. Best score 243 bits
Score difference with first non-orthologous sequence - A.gossypii:243 C.intestinalis:243

Q74Z71              	100.00%		F7B4P8              	100.00%
Bootstrap support for Q74Z71 as seed ortholog is 100%.
Bootstrap support for F7B4P8 as seed ortholog is 100%.

Group of orthologs #600. Best score 243 bits
Score difference with first non-orthologous sequence - A.gossypii:135 C.intestinalis:77

Q75CA9              	100.00%		F6XT60              	100.00%
Bootstrap support for Q75CA9 as seed ortholog is 100%.
Bootstrap support for F6XT60 as seed ortholog is 99%.

Group of orthologs #601. Best score 243 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.intestinalis:243

Q75BC1              	100.00%		H2XUE3              	100.00%
Bootstrap support for Q75BC1 as seed ortholog is 99%.
Bootstrap support for H2XUE3 as seed ortholog is 100%.

Group of orthologs #602. Best score 242 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.intestinalis:149

Q757N1              	100.00%		H2XK16              	100.00%
                    	       		F7AHT0              	91.30%
Bootstrap support for Q757N1 as seed ortholog is 100%.
Bootstrap support for H2XK16 as seed ortholog is 100%.

Group of orthologs #603. Best score 242 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.intestinalis:101

Q74ZE2              	100.00%		F6R3W0              	100.00%
Bootstrap support for Q74ZE2 as seed ortholog is 100%.
Bootstrap support for F6R3W0 as seed ortholog is 100%.

Group of orthologs #604. Best score 242 bits
Score difference with first non-orthologous sequence - A.gossypii:242 C.intestinalis:242

Q753C6              	100.00%		F6TJ64              	100.00%
Bootstrap support for Q753C6 as seed ortholog is 100%.
Bootstrap support for F6TJ64 as seed ortholog is 100%.

Group of orthologs #605. Best score 242 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.intestinalis:242

Q75C60              	100.00%		F6W2M8              	100.00%
Bootstrap support for Q75C60 as seed ortholog is 99%.
Bootstrap support for F6W2M8 as seed ortholog is 100%.

Group of orthologs #606. Best score 242 bits
Score difference with first non-orthologous sequence - A.gossypii:242 C.intestinalis:242

Q754I7              	100.00%		F7AAA7              	100.00%
Bootstrap support for Q754I7 as seed ortholog is 100%.
Bootstrap support for F7AAA7 as seed ortholog is 100%.

Group of orthologs #607. Best score 241 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.intestinalis:153

Q75BX7              	100.00%		H2Y0H5              	100.00%
                    	       		F6V8V5              	43.43%
Bootstrap support for Q75BX7 as seed ortholog is 99%.
Bootstrap support for H2Y0H5 as seed ortholog is 99%.

Group of orthologs #608. Best score 240 bits
Score difference with first non-orthologous sequence - A.gossypii:240 C.intestinalis:240

Q757S5              	100.00%		H2XU88              	100.00%
Bootstrap support for Q757S5 as seed ortholog is 100%.
Bootstrap support for H2XU88 as seed ortholog is 100%.

Group of orthologs #609. Best score 238 bits
Score difference with first non-orthologous sequence - A.gossypii:238 C.intestinalis:238

Q757V5              	100.00%		F6UJM5              	100.00%
Bootstrap support for Q757V5 as seed ortholog is 100%.
Bootstrap support for F6UJM5 as seed ortholog is 100%.

Group of orthologs #610. Best score 237 bits
Score difference with first non-orthologous sequence - A.gossypii:237 C.intestinalis:190

Q753M7              	100.00%		F6TXW3              	100.00%
Bootstrap support for Q753M7 as seed ortholog is 100%.
Bootstrap support for F6TXW3 as seed ortholog is 100%.

Group of orthologs #611. Best score 237 bits
Score difference with first non-orthologous sequence - A.gossypii:63 C.intestinalis:33

Q74ZI1              	100.00%		H2XLJ3              	100.00%
Bootstrap support for Q74ZI1 as seed ortholog is 99%.
Bootstrap support for H2XLJ3 as seed ortholog is 93%.

Group of orthologs #612. Best score 237 bits
Score difference with first non-orthologous sequence - A.gossypii:237 C.intestinalis:155

Q75CC4              	100.00%		H2XT24              	100.00%
Bootstrap support for Q75CC4 as seed ortholog is 100%.
Bootstrap support for H2XT24 as seed ortholog is 99%.

Group of orthologs #613. Best score 237 bits
Score difference with first non-orthologous sequence - A.gossypii:237 C.intestinalis:98

Q75CV6              	100.00%		H2Y2L0              	100.00%
Bootstrap support for Q75CV6 as seed ortholog is 100%.
Bootstrap support for H2Y2L0 as seed ortholog is 99%.

Group of orthologs #614. Best score 236 bits
Score difference with first non-orthologous sequence - A.gossypii:236 C.intestinalis:236

Q75BI7              	100.00%		F6WBE1              	100.00%
Bootstrap support for Q75BI7 as seed ortholog is 100%.
Bootstrap support for F6WBE1 as seed ortholog is 100%.

Group of orthologs #615. Best score 236 bits
Score difference with first non-orthologous sequence - A.gossypii:236 C.intestinalis:236

Q75CD7              	100.00%		F6XVH7              	100.00%
Bootstrap support for Q75CD7 as seed ortholog is 100%.
Bootstrap support for F6XVH7 as seed ortholog is 100%.

Group of orthologs #616. Best score 236 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.intestinalis:134

Q75AG1              	100.00%		F7A9Y8              	100.00%
Bootstrap support for Q75AG1 as seed ortholog is 99%.
Bootstrap support for F7A9Y8 as seed ortholog is 99%.

Group of orthologs #617. Best score 236 bits
Score difference with first non-orthologous sequence - A.gossypii:178 C.intestinalis:236

Q75E55              	100.00%		H2XR08              	100.00%
Bootstrap support for Q75E55 as seed ortholog is 99%.
Bootstrap support for H2XR08 as seed ortholog is 100%.

Group of orthologs #618. Best score 235 bits
Score difference with first non-orthologous sequence - A.gossypii:235 C.intestinalis:235

Q75ER3              	100.00%		F6SYV7              	100.00%
Q75EP7              	8.51%		
Bootstrap support for Q75ER3 as seed ortholog is 100%.
Bootstrap support for F6SYV7 as seed ortholog is 100%.

Group of orthologs #619. Best score 235 bits
Score difference with first non-orthologous sequence - A.gossypii:235 C.intestinalis:15

Q75CT2              	100.00%		F6QRC2              	100.00%
Bootstrap support for Q75CT2 as seed ortholog is 100%.
Bootstrap support for F6QRC2 as seed ortholog is 73%.
Alternative seed ortholog is F6PM82 (15 bits away from this cluster)

Group of orthologs #620. Best score 235 bits
Score difference with first non-orthologous sequence - A.gossypii:235 C.intestinalis:235

Q75D31              	100.00%		F6XXF0              	100.00%
Bootstrap support for Q75D31 as seed ortholog is 100%.
Bootstrap support for F6XXF0 as seed ortholog is 100%.

Group of orthologs #621. Best score 234 bits
Score difference with first non-orthologous sequence - A.gossypii:234 C.intestinalis:234

Q75D05              	100.00%		F6TJ76              	100.00%
Bootstrap support for Q75D05 as seed ortholog is 100%.
Bootstrap support for F6TJ76 as seed ortholog is 100%.

Group of orthologs #622. Best score 234 bits
Score difference with first non-orthologous sequence - A.gossypii:234 C.intestinalis:234

Q75D16              	100.00%		F6VN41              	100.00%
Bootstrap support for Q75D16 as seed ortholog is 100%.
Bootstrap support for F6VN41 as seed ortholog is 100%.

Group of orthologs #623. Best score 233 bits
Score difference with first non-orthologous sequence - A.gossypii:233 C.intestinalis:233

Q754F1              	100.00%		F7AB24              	100.00%
Bootstrap support for Q754F1 as seed ortholog is 100%.
Bootstrap support for F7AB24 as seed ortholog is 100%.

Group of orthologs #624. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:232 C.intestinalis:66

Q756U6              	100.00%		H2XNB4              	100.00%
                    	       		F6RCT7              	9.71%
Bootstrap support for Q756U6 as seed ortholog is 100%.
Bootstrap support for H2XNB4 as seed ortholog is 99%.

Group of orthologs #625. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:232 C.intestinalis:232

Q750I1              	100.00%		H2XU57              	100.00%
                    	       		Q8I7D6              	97.10%
Bootstrap support for Q750I1 as seed ortholog is 100%.
Bootstrap support for H2XU57 as seed ortholog is 100%.

Group of orthologs #626. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:232 C.intestinalis:232

Q755C7              	100.00%		F6QQ08              	100.00%
Bootstrap support for Q755C7 as seed ortholog is 100%.
Bootstrap support for F6QQ08 as seed ortholog is 100%.

Group of orthologs #627. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:112 C.intestinalis:131

Q755D7              	100.00%		F6RGE7              	100.00%
Bootstrap support for Q755D7 as seed ortholog is 100%.
Bootstrap support for F6RGE7 as seed ortholog is 100%.

Group of orthologs #628. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:232 C.intestinalis:232

Q751K0              	100.00%		F6XWY9              	100.00%
Bootstrap support for Q751K0 as seed ortholog is 100%.
Bootstrap support for F6XWY9 as seed ortholog is 100%.

Group of orthologs #629. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:232 C.intestinalis:232

Q758H5              	100.00%		F7B658              	100.00%
Bootstrap support for Q758H5 as seed ortholog is 100%.
Bootstrap support for F7B658 as seed ortholog is 100%.

Group of orthologs #630. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:232 C.intestinalis:232

Q751N1              	100.00%		H2XZ65              	100.00%
Bootstrap support for Q751N1 as seed ortholog is 100%.
Bootstrap support for H2XZ65 as seed ortholog is 100%.

Group of orthologs #631. Best score 231 bits
Score difference with first non-orthologous sequence - A.gossypii:231 C.intestinalis:88

Q74Z36              	100.00%		F6TYX5              	100.00%
Bootstrap support for Q74Z36 as seed ortholog is 100%.
Bootstrap support for F6TYX5 as seed ortholog is 98%.

Group of orthologs #632. Best score 231 bits
Score difference with first non-orthologous sequence - A.gossypii:231 C.intestinalis:175

Q758K7              	100.00%		F6YGZ1              	100.00%
Bootstrap support for Q758K7 as seed ortholog is 100%.
Bootstrap support for F6YGZ1 as seed ortholog is 99%.

Group of orthologs #633. Best score 230 bits
Score difference with first non-orthologous sequence - A.gossypii:230 C.intestinalis:230

Q753N8              	100.00%		F6QY24              	100.00%
Bootstrap support for Q753N8 as seed ortholog is 100%.
Bootstrap support for F6QY24 as seed ortholog is 100%.

Group of orthologs #634. Best score 230 bits
Score difference with first non-orthologous sequence - A.gossypii:230 C.intestinalis:230

Q75AJ1              	100.00%		F6S5I8              	100.00%
Bootstrap support for Q75AJ1 as seed ortholog is 100%.
Bootstrap support for F6S5I8 as seed ortholog is 100%.

Group of orthologs #635. Best score 230 bits
Score difference with first non-orthologous sequence - A.gossypii:230 C.intestinalis:230

Q75F88              	100.00%		F7A955              	100.00%
Bootstrap support for Q75F88 as seed ortholog is 100%.
Bootstrap support for F7A955 as seed ortholog is 100%.

Group of orthologs #636. Best score 229 bits
Score difference with first non-orthologous sequence - A.gossypii:229 C.intestinalis:229

Q75EE7              	100.00%		F6RGI4              	100.00%
Bootstrap support for Q75EE7 as seed ortholog is 100%.
Bootstrap support for F6RGI4 as seed ortholog is 100%.

Group of orthologs #637. Best score 229 bits
Score difference with first non-orthologous sequence - A.gossypii:229 C.intestinalis:229

Q75EY8              	100.00%		F6V136              	100.00%
Bootstrap support for Q75EY8 as seed ortholog is 100%.
Bootstrap support for F6V136 as seed ortholog is 100%.

Group of orthologs #638. Best score 229 bits
Score difference with first non-orthologous sequence - A.gossypii:229 C.intestinalis:229

Q758P1              	100.00%		F6YEQ8              	100.00%
Bootstrap support for Q758P1 as seed ortholog is 100%.
Bootstrap support for F6YEQ8 as seed ortholog is 100%.

Group of orthologs #639. Best score 229 bits
Score difference with first non-orthologous sequence - A.gossypii:229 C.intestinalis:229

Q75DQ2              	100.00%		H2XLC1              	100.00%
Bootstrap support for Q75DQ2 as seed ortholog is 100%.
Bootstrap support for H2XLC1 as seed ortholog is 100%.

Group of orthologs #640. Best score 228 bits
Score difference with first non-orthologous sequence - A.gossypii:228 C.intestinalis:228

Q754U3              	100.00%		F6TEZ1              	100.00%
Bootstrap support for Q754U3 as seed ortholog is 100%.
Bootstrap support for F6TEZ1 as seed ortholog is 100%.

Group of orthologs #641. Best score 228 bits
Score difference with first non-orthologous sequence - A.gossypii:228 C.intestinalis:228

Q757N7              	100.00%		F6UJI9              	100.00%
Bootstrap support for Q757N7 as seed ortholog is 100%.
Bootstrap support for F6UJI9 as seed ortholog is 100%.

Group of orthologs #642. Best score 228 bits
Score difference with first non-orthologous sequence - A.gossypii:179 C.intestinalis:161

Q75C26              	100.00%		F6VEB2              	100.00%
Bootstrap support for Q75C26 as seed ortholog is 100%.
Bootstrap support for F6VEB2 as seed ortholog is 99%.

Group of orthologs #643. Best score 228 bits
Score difference with first non-orthologous sequence - A.gossypii:228 C.intestinalis:228

Q754R5              	100.00%		F7A912              	100.00%
Bootstrap support for Q754R5 as seed ortholog is 100%.
Bootstrap support for F7A912 as seed ortholog is 100%.

Group of orthologs #644. Best score 227 bits
Score difference with first non-orthologous sequence - A.gossypii:127 C.intestinalis:164

Q750H1              	100.00%		Q1RL34              	100.00%
                    	       		H2XW94              	10.19%
Bootstrap support for Q750H1 as seed ortholog is 99%.
Bootstrap support for Q1RL34 as seed ortholog is 99%.

Group of orthologs #645. Best score 227 bits
Score difference with first non-orthologous sequence - A.gossypii:227 C.intestinalis:227

Q75EF1              	100.00%		F6PM63              	100.00%
Bootstrap support for Q75EF1 as seed ortholog is 100%.
Bootstrap support for F6PM63 as seed ortholog is 100%.

Group of orthologs #646. Best score 227 bits
Score difference with first non-orthologous sequence - A.gossypii:227 C.intestinalis:227

Q758E0              	100.00%		F6T9R1              	100.00%
Bootstrap support for Q758E0 as seed ortholog is 100%.
Bootstrap support for F6T9R1 as seed ortholog is 100%.

Group of orthologs #647. Best score 227 bits
Score difference with first non-orthologous sequence - A.gossypii:227 C.intestinalis:227

Q75ES9              	100.00%		F6X3S3              	100.00%
Bootstrap support for Q75ES9 as seed ortholog is 100%.
Bootstrap support for F6X3S3 as seed ortholog is 100%.

Group of orthologs #648. Best score 227 bits
Score difference with first non-orthologous sequence - A.gossypii:227 C.intestinalis:227

Q756S9              	100.00%		H2XPN9              	100.00%
Bootstrap support for Q756S9 as seed ortholog is 100%.
Bootstrap support for H2XPN9 as seed ortholog is 100%.

Group of orthologs #649. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.intestinalis:225

Q74Z09              	100.00%		F6PKD1              	100.00%
Bootstrap support for Q74Z09 as seed ortholog is 100%.
Bootstrap support for F6PKD1 as seed ortholog is 100%.

Group of orthologs #650. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.intestinalis:225

Q75B81              	100.00%		F6R589              	100.00%
Bootstrap support for Q75B81 as seed ortholog is 100%.
Bootstrap support for F6R589 as seed ortholog is 100%.

Group of orthologs #651. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.intestinalis:225

Q750X2              	100.00%		F6URQ9              	100.00%
Bootstrap support for Q750X2 as seed ortholog is 100%.
Bootstrap support for F6URQ9 as seed ortholog is 100%.

Group of orthologs #652. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.intestinalis:63

Q75DI8              	100.00%		F6Q1G7              	100.00%
Bootstrap support for Q75DI8 as seed ortholog is 100%.
Bootstrap support for F6Q1G7 as seed ortholog is 97%.

Group of orthologs #653. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.intestinalis:225

Q75C63              	100.00%		F6TJB5              	100.00%
Bootstrap support for Q75C63 as seed ortholog is 100%.
Bootstrap support for F6TJB5 as seed ortholog is 100%.

Group of orthologs #654. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.intestinalis:225

Q750U5              	100.00%		F6ZGD4              	100.00%
Bootstrap support for Q750U5 as seed ortholog is 100%.
Bootstrap support for F6ZGD4 as seed ortholog is 100%.

Group of orthologs #655. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.intestinalis:225

Q75DJ3              	100.00%		F6YYA5              	100.00%
Bootstrap support for Q75DJ3 as seed ortholog is 100%.
Bootstrap support for F6YYA5 as seed ortholog is 100%.

Group of orthologs #656. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.intestinalis:225

Q758S4              	100.00%		F7BH80              	100.00%
Bootstrap support for Q758S4 as seed ortholog is 100%.
Bootstrap support for F7BH80 as seed ortholog is 100%.

Group of orthologs #657. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:127 C.intestinalis:93

Q75EB8              	100.00%		H2XRU5              	100.00%
Bootstrap support for Q75EB8 as seed ortholog is 100%.
Bootstrap support for H2XRU5 as seed ortholog is 100%.

Group of orthologs #658. Best score 224 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.intestinalis:224

Q750N9              	100.00%		F6RUQ3              	100.00%
Bootstrap support for Q750N9 as seed ortholog is 99%.
Bootstrap support for F6RUQ3 as seed ortholog is 100%.

Group of orthologs #659. Best score 223 bits
Score difference with first non-orthologous sequence - A.gossypii:223 C.intestinalis:223

Q756S5              	100.00%		F6XBT4              	100.00%
Bootstrap support for Q756S5 as seed ortholog is 100%.
Bootstrap support for F6XBT4 as seed ortholog is 100%.

Group of orthologs #660. Best score 223 bits
Score difference with first non-orthologous sequence - A.gossypii:223 C.intestinalis:223

Q74ZJ1              	100.00%		F7A5L4              	100.00%
Bootstrap support for Q74ZJ1 as seed ortholog is 100%.
Bootstrap support for F7A5L4 as seed ortholog is 100%.

Group of orthologs #661. Best score 223 bits
Score difference with first non-orthologous sequence - A.gossypii:223 C.intestinalis:223

Q754L1              	100.00%		H2XY10              	100.00%
Bootstrap support for Q754L1 as seed ortholog is 100%.
Bootstrap support for H2XY10 as seed ortholog is 100%.

Group of orthologs #662. Best score 222 bits
Score difference with first non-orthologous sequence - A.gossypii:222 C.intestinalis:222

Q754G6              	100.00%		F6U1K7              	100.00%
                    	       		F6W673              	7.35%
Bootstrap support for Q754G6 as seed ortholog is 100%.
Bootstrap support for F6U1K7 as seed ortholog is 100%.

Group of orthologs #663. Best score 222 bits
Score difference with first non-orthologous sequence - A.gossypii:222 C.intestinalis:222

Q750F1              	100.00%		F6UXH9              	100.00%
Bootstrap support for Q750F1 as seed ortholog is 100%.
Bootstrap support for F6UXH9 as seed ortholog is 100%.

Group of orthologs #664. Best score 222 bits
Score difference with first non-orthologous sequence - A.gossypii:134 C.intestinalis:96

Q75DG7              	100.00%		F6XWG9              	100.00%
Bootstrap support for Q75DG7 as seed ortholog is 100%.
Bootstrap support for F6XWG9 as seed ortholog is 99%.

Group of orthologs #665. Best score 221 bits
Score difference with first non-orthologous sequence - A.gossypii:221 C.intestinalis:221

Q75EH1              	100.00%		F7B1Y1              	100.00%
                    	       		Q8I7D5              	90.28%
Bootstrap support for Q75EH1 as seed ortholog is 100%.
Bootstrap support for F7B1Y1 as seed ortholog is 100%.

Group of orthologs #666. Best score 221 bits
Score difference with first non-orthologous sequence - A.gossypii:221 C.intestinalis:55

Q75EF7              	100.00%		H2XNI1              	100.00%
                    	       		F6UEZ5              	21.39%
Bootstrap support for Q75EF7 as seed ortholog is 100%.
Bootstrap support for H2XNI1 as seed ortholog is 86%.

Group of orthologs #667. Best score 221 bits
Score difference with first non-orthologous sequence - A.gossypii:221 C.intestinalis:221

Q75AM4              	100.00%		F6SHZ7              	100.00%
Bootstrap support for Q75AM4 as seed ortholog is 100%.
Bootstrap support for F6SHZ7 as seed ortholog is 100%.

Group of orthologs #668. Best score 221 bits
Score difference with first non-orthologous sequence - A.gossypii:221 C.intestinalis:221

Q756A0              	100.00%		F6YRR0              	100.00%
Bootstrap support for Q756A0 as seed ortholog is 100%.
Bootstrap support for F6YRR0 as seed ortholog is 100%.

Group of orthologs #669. Best score 221 bits
Score difference with first non-orthologous sequence - A.gossypii:168 C.intestinalis:140

Q757K8              	100.00%		F6ZVR2              	100.00%
Bootstrap support for Q757K8 as seed ortholog is 99%.
Bootstrap support for F6ZVR2 as seed ortholog is 99%.

Group of orthologs #670. Best score 220 bits
Score difference with first non-orthologous sequence - A.gossypii:220 C.intestinalis:220

Q75E00              	100.00%		F6PKT6              	100.00%
Bootstrap support for Q75E00 as seed ortholog is 100%.
Bootstrap support for F6PKT6 as seed ortholog is 100%.

Group of orthologs #671. Best score 220 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.intestinalis:136

O60029              	100.00%		F6Z241              	100.00%
Bootstrap support for O60029 as seed ortholog is 99%.
Bootstrap support for F6Z241 as seed ortholog is 99%.

Group of orthologs #672. Best score 220 bits
Score difference with first non-orthologous sequence - A.gossypii:220 C.intestinalis:220

Q75DH0              	100.00%		F6YH10              	100.00%
Bootstrap support for Q75DH0 as seed ortholog is 100%.
Bootstrap support for F6YH10 as seed ortholog is 100%.

Group of orthologs #673. Best score 220 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:28

Q75BN2              	100.00%		F7AUM2              	100.00%
Bootstrap support for Q75BN2 as seed ortholog is 96%.
Bootstrap support for F7AUM2 as seed ortholog is 78%.

Group of orthologs #674. Best score 219 bits
Score difference with first non-orthologous sequence - A.gossypii:219 C.intestinalis:219

Q75DR9              	100.00%		F6XL66              	100.00%
Bootstrap support for Q75DR9 as seed ortholog is 100%.
Bootstrap support for F6XL66 as seed ortholog is 100%.

Group of orthologs #675. Best score 219 bits
Score difference with first non-orthologous sequence - A.gossypii:219 C.intestinalis:49

Q751M0              	100.00%		Q8I7E2              	100.00%
Bootstrap support for Q751M0 as seed ortholog is 100%.
Bootstrap support for Q8I7E2 as seed ortholog is 95%.

Group of orthologs #676. Best score 218 bits
Score difference with first non-orthologous sequence - A.gossypii:218 C.intestinalis:218

Q75ET1              	100.00%		F6WYT3              	100.00%
                    	       		H2XRA0              	21.07%
Bootstrap support for Q75ET1 as seed ortholog is 100%.
Bootstrap support for F6WYT3 as seed ortholog is 100%.

Group of orthologs #677. Best score 218 bits
Score difference with first non-orthologous sequence - A.gossypii:218 C.intestinalis:133

Q757X1              	100.00%		F6R4F4              	100.00%
Bootstrap support for Q757X1 as seed ortholog is 100%.
Bootstrap support for F6R4F4 as seed ortholog is 99%.

Group of orthologs #678. Best score 218 bits
Score difference with first non-orthologous sequence - A.gossypii:218 C.intestinalis:218

Q757S9              	100.00%		F6UA65              	100.00%
Bootstrap support for Q757S9 as seed ortholog is 100%.
Bootstrap support for F6UA65 as seed ortholog is 100%.

Group of orthologs #679. Best score 218 bits
Score difference with first non-orthologous sequence - A.gossypii:218 C.intestinalis:218

Q75BA5              	100.00%		F6W713              	100.00%
Bootstrap support for Q75BA5 as seed ortholog is 100%.
Bootstrap support for F6W713 as seed ortholog is 100%.

Group of orthologs #680. Best score 218 bits
Score difference with first non-orthologous sequence - A.gossypii:218 C.intestinalis:218

Q75DB6              	100.00%		F6YNG6              	100.00%
Bootstrap support for Q75DB6 as seed ortholog is 100%.
Bootstrap support for F6YNG6 as seed ortholog is 100%.

Group of orthologs #681. Best score 218 bits
Score difference with first non-orthologous sequence - A.gossypii:218 C.intestinalis:218

Q75AN0              	100.00%		F6ZZH3              	100.00%
Bootstrap support for Q75AN0 as seed ortholog is 100%.
Bootstrap support for F6ZZH3 as seed ortholog is 100%.

Group of orthologs #682. Best score 218 bits
Score difference with first non-orthologous sequence - A.gossypii:218 C.intestinalis:72

Q756I7              	100.00%		H2XR17              	100.00%
Bootstrap support for Q756I7 as seed ortholog is 100%.
Bootstrap support for H2XR17 as seed ortholog is 98%.

Group of orthologs #683. Best score 217 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.intestinalis:217

Q75DP5              	100.00%		F6VL21              	100.00%
Q75BF3              	9.90%		F6XLF0              	5.15%
Bootstrap support for Q75DP5 as seed ortholog is 96%.
Bootstrap support for F6VL21 as seed ortholog is 100%.

Group of orthologs #684. Best score 217 bits
Score difference with first non-orthologous sequence - A.gossypii:217 C.intestinalis:217

Q75BW2              	100.00%		F6UP98              	100.00%
Bootstrap support for Q75BW2 as seed ortholog is 100%.
Bootstrap support for F6UP98 as seed ortholog is 100%.

Group of orthologs #685. Best score 217 bits
Score difference with first non-orthologous sequence - A.gossypii:217 C.intestinalis:217

Q75EW8              	100.00%		F6Z910              	100.00%
Bootstrap support for Q75EW8 as seed ortholog is 100%.
Bootstrap support for F6Z910 as seed ortholog is 100%.

Group of orthologs #686. Best score 217 bits
Score difference with first non-orthologous sequence - A.gossypii:217 C.intestinalis:217

Q752A1              	100.00%		H2Y0S6              	100.00%
Bootstrap support for Q752A1 as seed ortholog is 100%.
Bootstrap support for H2Y0S6 as seed ortholog is 100%.

Group of orthologs #687. Best score 216 bits
Score difference with first non-orthologous sequence - A.gossypii:216 C.intestinalis:28

Q752H4              	100.00%		F6PSK8              	100.00%
Bootstrap support for Q752H4 as seed ortholog is 100%.
Bootstrap support for F6PSK8 as seed ortholog is 75%.

Group of orthologs #688. Best score 216 bits
Score difference with first non-orthologous sequence - A.gossypii:143 C.intestinalis:75

Q74ZS7              	100.00%		F6S2W5              	100.00%
Bootstrap support for Q74ZS7 as seed ortholog is 100%.
Bootstrap support for F6S2W5 as seed ortholog is 99%.

Group of orthologs #689. Best score 216 bits
Score difference with first non-orthologous sequence - A.gossypii:216 C.intestinalis:216

Q75CY7              	100.00%		F6WJQ0              	100.00%
Bootstrap support for Q75CY7 as seed ortholog is 100%.
Bootstrap support for F6WJQ0 as seed ortholog is 100%.

Group of orthologs #690. Best score 216 bits
Score difference with first non-orthologous sequence - A.gossypii:216 C.intestinalis:216

Q752C7              	100.00%		F7B5Q2              	100.00%
Bootstrap support for Q752C7 as seed ortholog is 100%.
Bootstrap support for F7B5Q2 as seed ortholog is 100%.

Group of orthologs #691. Best score 216 bits
Score difference with first non-orthologous sequence - A.gossypii:216 C.intestinalis:216

Q75EW2              	100.00%		F6Y6W3              	100.00%
Bootstrap support for Q75EW2 as seed ortholog is 100%.
Bootstrap support for F6Y6W3 as seed ortholog is 100%.

Group of orthologs #692. Best score 216 bits
Score difference with first non-orthologous sequence - A.gossypii:216 C.intestinalis:216

Q75E05              	100.00%		H2XY27              	100.00%
Bootstrap support for Q75E05 as seed ortholog is 100%.
Bootstrap support for H2XY27 as seed ortholog is 100%.

Group of orthologs #693. Best score 216 bits
Score difference with first non-orthologous sequence - A.gossypii:26 C.intestinalis:104

Q75BS5              	100.00%		Q4H383              	100.00%
Bootstrap support for Q75BS5 as seed ortholog is 74%.
Alternative seed ortholog is Q75C02 (26 bits away from this cluster)
Bootstrap support for Q4H383 as seed ortholog is 99%.

Group of orthologs #694. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:143 C.intestinalis:148

Q755R8              	100.00%		F6QRJ2              	100.00%
Bootstrap support for Q755R8 as seed ortholog is 99%.
Bootstrap support for F6QRJ2 as seed ortholog is 99%.

Group of orthologs #695. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.intestinalis:215

Q751F8              	100.00%		F6SZ37              	100.00%
Bootstrap support for Q751F8 as seed ortholog is 100%.
Bootstrap support for F6SZ37 as seed ortholog is 100%.

Group of orthologs #696. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.intestinalis:215

Q74Z39              	100.00%		F6Y0M4              	100.00%
Bootstrap support for Q74Z39 as seed ortholog is 100%.
Bootstrap support for F6Y0M4 as seed ortholog is 100%.

Group of orthologs #697. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.intestinalis:114

Q758V7              	100.00%		F6WWK0              	100.00%
Bootstrap support for Q758V7 as seed ortholog is 100%.
Bootstrap support for F6WWK0 as seed ortholog is 99%.

Group of orthologs #698. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.intestinalis:215

Q757Z6              	100.00%		F6YG81              	100.00%
Bootstrap support for Q757Z6 as seed ortholog is 100%.
Bootstrap support for F6YG81 as seed ortholog is 100%.

Group of orthologs #699. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:139 C.intestinalis:215

Q75DM8              	100.00%		F6XR36              	100.00%
Bootstrap support for Q75DM8 as seed ortholog is 99%.
Bootstrap support for F6XR36 as seed ortholog is 100%.

Group of orthologs #700. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.intestinalis:215

Q75CL1              	100.00%		Q8I7E3              	100.00%
Bootstrap support for Q75CL1 as seed ortholog is 100%.
Bootstrap support for Q8I7E3 as seed ortholog is 100%.

Group of orthologs #701. Best score 214 bits
Score difference with first non-orthologous sequence - A.gossypii:44 C.intestinalis:128

Q755N1              	100.00%		F6XXW0              	100.00%
                    	       		F6X159              	12.12%
                    	       		F7BJ92              	7.32%
Bootstrap support for Q755N1 as seed ortholog is 88%.
Bootstrap support for F6XXW0 as seed ortholog is 99%.

Group of orthologs #702. Best score 214 bits
Score difference with first non-orthologous sequence - A.gossypii:214 C.intestinalis:214

Q751Q9              	100.00%		F6TCH6              	100.00%
Bootstrap support for Q751Q9 as seed ortholog is 100%.
Bootstrap support for F6TCH6 as seed ortholog is 100%.

Group of orthologs #703. Best score 214 bits
Score difference with first non-orthologous sequence - A.gossypii:139 C.intestinalis:105

Q757F7              	100.00%		H2XMB6              	100.00%
Bootstrap support for Q757F7 as seed ortholog is 100%.
Bootstrap support for H2XMB6 as seed ortholog is 100%.

Group of orthologs #704. Best score 213 bits
Score difference with first non-orthologous sequence - A.gossypii:213 C.intestinalis:213

Q750E7              	100.00%		F6QX56              	100.00%
Bootstrap support for Q750E7 as seed ortholog is 100%.
Bootstrap support for F6QX56 as seed ortholog is 100%.

Group of orthologs #705. Best score 213 bits
Score difference with first non-orthologous sequence - A.gossypii:213 C.intestinalis:213

Q75BV3              	100.00%		F6SSU2              	100.00%
Bootstrap support for Q75BV3 as seed ortholog is 100%.
Bootstrap support for F6SSU2 as seed ortholog is 100%.

Group of orthologs #706. Best score 213 bits
Score difference with first non-orthologous sequence - A.gossypii:213 C.intestinalis:213

Q75AS7              	100.00%		F6UGM6              	100.00%
Bootstrap support for Q75AS7 as seed ortholog is 100%.
Bootstrap support for F6UGM6 as seed ortholog is 100%.

Group of orthologs #707. Best score 213 bits
Score difference with first non-orthologous sequence - A.gossypii:213 C.intestinalis:213

Q75AK7              	100.00%		F6Y3K6              	100.00%
Bootstrap support for Q75AK7 as seed ortholog is 100%.
Bootstrap support for F6Y3K6 as seed ortholog is 100%.

Group of orthologs #708. Best score 213 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.intestinalis:1

Q753G6              	100.00%		F7ATI9              	100.00%
Bootstrap support for Q753G6 as seed ortholog is 98%.
Bootstrap support for F7ATI9 as seed ortholog is 62%.
Alternative seed ortholog is F6Y7P7 (1 bits away from this cluster)

Group of orthologs #709. Best score 212 bits
Score difference with first non-orthologous sequence - A.gossypii:212 C.intestinalis:212

Q751Y9              	100.00%		F6RAN6              	100.00%
Bootstrap support for Q751Y9 as seed ortholog is 100%.
Bootstrap support for F6RAN6 as seed ortholog is 100%.

Group of orthologs #710. Best score 212 bits
Score difference with first non-orthologous sequence - A.gossypii:212 C.intestinalis:212

Q75DY0              	100.00%		F6PQL4              	100.00%
Bootstrap support for Q75DY0 as seed ortholog is 100%.
Bootstrap support for F6PQL4 as seed ortholog is 100%.

Group of orthologs #711. Best score 212 bits
Score difference with first non-orthologous sequence - A.gossypii:212 C.intestinalis:212

Q759C8              	100.00%		F6VKZ4              	100.00%
Bootstrap support for Q759C8 as seed ortholog is 100%.
Bootstrap support for F6VKZ4 as seed ortholog is 100%.

Group of orthologs #712. Best score 212 bits
Score difference with first non-orthologous sequence - A.gossypii:212 C.intestinalis:212

Q75E64              	100.00%		F7AIP5              	100.00%
Bootstrap support for Q75E64 as seed ortholog is 100%.
Bootstrap support for F7AIP5 as seed ortholog is 100%.

Group of orthologs #713. Best score 211 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.intestinalis:124

Q75BL1              	100.00%		F6UQ99              	100.00%
Bootstrap support for Q75BL1 as seed ortholog is 99%.
Bootstrap support for F6UQ99 as seed ortholog is 99%.

Group of orthologs #714. Best score 211 bits
Score difference with first non-orthologous sequence - A.gossypii:211 C.intestinalis:211

Q75CA4              	100.00%		F6UX10              	100.00%
Bootstrap support for Q75CA4 as seed ortholog is 100%.
Bootstrap support for F6UX10 as seed ortholog is 100%.

Group of orthologs #715. Best score 211 bits
Score difference with first non-orthologous sequence - A.gossypii:211 C.intestinalis:211

Q755E6              	100.00%		F7AHM4              	100.00%
Bootstrap support for Q755E6 as seed ortholog is 100%.
Bootstrap support for F7AHM4 as seed ortholog is 100%.

Group of orthologs #716. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:210 C.intestinalis:210

Q74ZP9              	100.00%		F6SWH7              	100.00%
Bootstrap support for Q74ZP9 as seed ortholog is 100%.
Bootstrap support for F6SWH7 as seed ortholog is 100%.

Group of orthologs #717. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:210 C.intestinalis:210

Q755C8              	100.00%		F6TLE4              	100.00%
Bootstrap support for Q755C8 as seed ortholog is 100%.
Bootstrap support for F6TLE4 as seed ortholog is 100%.

Group of orthologs #718. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:210 C.intestinalis:210

Q75CN7              	100.00%		F6QWP6              	100.00%
Bootstrap support for Q75CN7 as seed ortholog is 100%.
Bootstrap support for F6QWP6 as seed ortholog is 100%.

Group of orthologs #719. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:88 C.intestinalis:20

Q750L3              	100.00%		F6Z255              	100.00%
Bootstrap support for Q750L3 as seed ortholog is 99%.
Bootstrap support for F6Z255 as seed ortholog is 79%.

Group of orthologs #720. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:210 C.intestinalis:210

Q75CP8              	100.00%		F6VXD0              	100.00%
Bootstrap support for Q75CP8 as seed ortholog is 100%.
Bootstrap support for F6VXD0 as seed ortholog is 100%.

Group of orthologs #721. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.intestinalis:133

Q755U9              	100.00%		F6ZP71              	100.00%
Bootstrap support for Q755U9 as seed ortholog is 94%.
Bootstrap support for F6ZP71 as seed ortholog is 99%.

Group of orthologs #722. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.intestinalis:210

Q75BN8              	100.00%		F6YLQ9              	100.00%
Bootstrap support for Q75BN8 as seed ortholog is 99%.
Bootstrap support for F6YLQ9 as seed ortholog is 100%.

Group of orthologs #723. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.intestinalis:210

Q75C46              	100.00%		F7B3M4              	100.00%
Bootstrap support for Q75C46 as seed ortholog is 99%.
Bootstrap support for F7B3M4 as seed ortholog is 100%.

Group of orthologs #724. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:210 C.intestinalis:210

Q75A47              	100.00%		H2XRS3              	100.00%
Bootstrap support for Q75A47 as seed ortholog is 100%.
Bootstrap support for H2XRS3 as seed ortholog is 100%.

Group of orthologs #725. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:210 C.intestinalis:210

Q75EW1              	100.00%		I6L7H7              	100.00%
Bootstrap support for Q75EW1 as seed ortholog is 100%.
Bootstrap support for I6L7H7 as seed ortholog is 100%.

Group of orthologs #726. Best score 209 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.intestinalis:209

Q756U5              	100.00%		F7BEM7              	100.00%
                    	       		F6WKT2              	51.87%
                    	       		F6ZAX9              	32.45%
                    	       		H2XN25              	29.95%
                    	       		H2XYN4              	9.28%
Bootstrap support for Q756U5 as seed ortholog is 97%.
Bootstrap support for F7BEM7 as seed ortholog is 100%.

Group of orthologs #727. Best score 209 bits
Score difference with first non-orthologous sequence - A.gossypii:209 C.intestinalis:209

O60028              	100.00%		F6UUA2              	100.00%
Bootstrap support for O60028 as seed ortholog is 100%.
Bootstrap support for F6UUA2 as seed ortholog is 100%.

Group of orthologs #728. Best score 209 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.intestinalis:64

Q75EY4              	100.00%		F6TFY3              	100.00%
Bootstrap support for Q75EY4 as seed ortholog is 99%.
Bootstrap support for F6TFY3 as seed ortholog is 99%.

Group of orthologs #729. Best score 209 bits
Score difference with first non-orthologous sequence - A.gossypii:209 C.intestinalis:209

Q75BB5              	100.00%		F6V6R4              	100.00%
Bootstrap support for Q75BB5 as seed ortholog is 100%.
Bootstrap support for F6V6R4 as seed ortholog is 100%.

Group of orthologs #730. Best score 209 bits
Score difference with first non-orthologous sequence - A.gossypii:209 C.intestinalis:209

Q75AM2              	100.00%		F7B2Q7              	100.00%
Bootstrap support for Q75AM2 as seed ortholog is 100%.
Bootstrap support for F7B2Q7 as seed ortholog is 100%.

Group of orthologs #731. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:208 C.intestinalis:7

Q756D1              	100.00%		F6TZ34              	100.00%
                    	       		F7AAS8              	19.24%
Bootstrap support for Q756D1 as seed ortholog is 100%.
Bootstrap support for F6TZ34 as seed ortholog is 59%.
Alternative seed ortholog is F6PR16 (7 bits away from this cluster)

Group of orthologs #732. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:208 C.intestinalis:131

Q75DD1              	100.00%		F7BBQ5              	100.00%
                    	       		F6YB01              	32.03%
Bootstrap support for Q75DD1 as seed ortholog is 100%.
Bootstrap support for F7BBQ5 as seed ortholog is 100%.

Group of orthologs #733. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.intestinalis:208

Q758U3              	100.00%		F6UMT8              	100.00%
Bootstrap support for Q758U3 as seed ortholog is 99%.
Bootstrap support for F6UMT8 as seed ortholog is 100%.

Group of orthologs #734. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:208 C.intestinalis:208

Q75EN6              	100.00%		F6SF69              	100.00%
Bootstrap support for Q75EN6 as seed ortholog is 100%.
Bootstrap support for F6SF69 as seed ortholog is 100%.

Group of orthologs #735. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:208 C.intestinalis:82

Q755W7              	100.00%		F6ZRC6              	100.00%
Bootstrap support for Q755W7 as seed ortholog is 100%.
Bootstrap support for F6ZRC6 as seed ortholog is 98%.

Group of orthologs #736. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:208 C.intestinalis:208

Q75CF4              	100.00%		F6ZN43              	100.00%
Bootstrap support for Q75CF4 as seed ortholog is 100%.
Bootstrap support for F6ZN43 as seed ortholog is 100%.

Group of orthologs #737. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:208 C.intestinalis:208

Q75DA5              	100.00%		Q4H3S6              	100.00%
Bootstrap support for Q75DA5 as seed ortholog is 100%.
Bootstrap support for Q4H3S6 as seed ortholog is 100%.

Group of orthologs #738. Best score 207 bits
Score difference with first non-orthologous sequence - A.gossypii:40 C.intestinalis:95

Q754V5              	100.00%		F6TVX8              	100.00%
                    	       		F6YRW6              	15.80%
                    	       		F6YR14              	7.83%
                    	       		F6TBD1              	5.22%
Bootstrap support for Q754V5 as seed ortholog is 83%.
Bootstrap support for F6TVX8 as seed ortholog is 98%.

Group of orthologs #739. Best score 207 bits
Score difference with first non-orthologous sequence - A.gossypii:125 C.intestinalis:85

Q757D8              	100.00%		F6SJF0              	100.00%
Bootstrap support for Q757D8 as seed ortholog is 99%.
Bootstrap support for F6SJF0 as seed ortholog is 99%.

Group of orthologs #740. Best score 207 bits
Score difference with first non-orthologous sequence - A.gossypii:207 C.intestinalis:207

Q751R5              	100.00%		F6WJQ9              	100.00%
Bootstrap support for Q751R5 as seed ortholog is 100%.
Bootstrap support for F6WJQ9 as seed ortholog is 100%.

Group of orthologs #741. Best score 207 bits
Score difference with first non-orthologous sequence - A.gossypii:34 C.intestinalis:207

Q75C30              	100.00%		Q967X2              	100.00%
Bootstrap support for Q75C30 as seed ortholog is 85%.
Bootstrap support for Q967X2 as seed ortholog is 100%.

Group of orthologs #742. Best score 206 bits
Score difference with first non-orthologous sequence - A.gossypii:206 C.intestinalis:206

Q75BS3              	100.00%		F6Z6J2              	100.00%
                    	       		I6L212              	100.00%
Bootstrap support for Q75BS3 as seed ortholog is 100%.
Bootstrap support for F6Z6J2 as seed ortholog is 100%.
Bootstrap support for I6L212 as seed ortholog is 100%.

Group of orthologs #743. Best score 206 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.intestinalis:134

Q754D9              	100.00%		F6QEH2              	100.00%
Bootstrap support for Q754D9 as seed ortholog is 99%.
Bootstrap support for F6QEH2 as seed ortholog is 99%.

Group of orthologs #744. Best score 205 bits
Score difference with first non-orthologous sequence - A.gossypii:205 C.intestinalis:205

Q75B05              	100.00%		H2XZ54              	100.00%
                    	       		F6Y5Q3              	16.67%
Bootstrap support for Q75B05 as seed ortholog is 100%.
Bootstrap support for H2XZ54 as seed ortholog is 100%.

Group of orthologs #745. Best score 205 bits
Score difference with first non-orthologous sequence - A.gossypii:19 C.intestinalis:55

Q75CK3              	100.00%		F6S1S7              	100.00%
Bootstrap support for Q75CK3 as seed ortholog is 78%.
Bootstrap support for F6S1S7 as seed ortholog is 99%.

Group of orthologs #746. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.intestinalis:83

Q75CM6              	100.00%		H2XQH0              	100.00%
                    	       		H2XUY3              	20.62%
                    	       		F6WI49              	5.54%
Bootstrap support for Q75CM6 as seed ortholog is 100%.
Bootstrap support for H2XQH0 as seed ortholog is 98%.

Group of orthologs #747. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.intestinalis:89

Q75ET2              	100.00%		F6VL41              	100.00%
                    	       		F6YBW0              	25.06%
Bootstrap support for Q75ET2 as seed ortholog is 85%.
Bootstrap support for F6VL41 as seed ortholog is 91%.

Group of orthologs #748. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.intestinalis:40

Q752V9              	100.00%		H2Y3H5              	100.00%
                    	       		F6SBR0              	11.59%
Bootstrap support for Q752V9 as seed ortholog is 100%.
Bootstrap support for H2Y3H5 as seed ortholog is 97%.

Group of orthologs #749. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.intestinalis:34

Q756N0              	100.00%		F6U222              	100.00%
Bootstrap support for Q756N0 as seed ortholog is 100%.
Bootstrap support for F6U222 as seed ortholog is 71%.
Alternative seed ortholog is F6WXR3 (34 bits away from this cluster)

Group of orthologs #750. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.intestinalis:204

Q74ZF7              	100.00%		F6XER0              	100.00%
Bootstrap support for Q74ZF7 as seed ortholog is 100%.
Bootstrap support for F6XER0 as seed ortholog is 100%.

Group of orthologs #751. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:18 C.intestinalis:204

Q75BY1              	100.00%		F6WZS8              	100.00%
Bootstrap support for Q75BY1 as seed ortholog is 71%.
Alternative seed ortholog is Q753L9 (18 bits away from this cluster)
Bootstrap support for F6WZS8 as seed ortholog is 100%.

Group of orthologs #752. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.intestinalis:204

Q752Z8              	100.00%		F7AJZ2              	100.00%
Bootstrap support for Q752Z8 as seed ortholog is 100%.
Bootstrap support for F7AJZ2 as seed ortholog is 100%.

Group of orthologs #753. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.intestinalis:204

Q75G34              	100.00%		Q8HIN3              	100.00%
Bootstrap support for Q75G34 as seed ortholog is 100%.
Bootstrap support for Q8HIN3 as seed ortholog is 100%.

Group of orthologs #754. Best score 203 bits
Score difference with first non-orthologous sequence - A.gossypii:203 C.intestinalis:203

Q759V2              	100.00%		F6UNA3              	100.00%
Q75AW2              	11.28%		F6QH95              	35.39%
Bootstrap support for Q759V2 as seed ortholog is 100%.
Bootstrap support for F6UNA3 as seed ortholog is 100%.

Group of orthologs #755. Best score 203 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:203

Q751N3              	100.00%		F6YI64              	100.00%
Bootstrap support for Q751N3 as seed ortholog is 99%.
Bootstrap support for F6YI64 as seed ortholog is 100%.

Group of orthologs #756. Best score 203 bits
Score difference with first non-orthologous sequence - A.gossypii:203 C.intestinalis:203

Q75DI9              	100.00%		F6XVD3              	100.00%
Bootstrap support for Q75DI9 as seed ortholog is 100%.
Bootstrap support for F6XVD3 as seed ortholog is 100%.

Group of orthologs #757. Best score 202 bits
Score difference with first non-orthologous sequence - A.gossypii:202 C.intestinalis:202

Q75C85              	100.00%		F6TQ12              	100.00%
Bootstrap support for Q75C85 as seed ortholog is 100%.
Bootstrap support for F6TQ12 as seed ortholog is 100%.

Group of orthologs #758. Best score 202 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.intestinalis:89

Q755Y0              	100.00%		F6ZIP1              	100.00%
Bootstrap support for Q755Y0 as seed ortholog is 99%.
Bootstrap support for F6ZIP1 as seed ortholog is 95%.

Group of orthologs #759. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:201 C.intestinalis:57

Q751V7              	100.00%		F6WYW5              	100.00%
                    	       		F6QWS2              	18.96%
                    	       		F6RBW8              	6.62%
Bootstrap support for Q751V7 as seed ortholog is 100%.
Bootstrap support for F6WYW5 as seed ortholog is 92%.

Group of orthologs #760. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:201 C.intestinalis:201

Q752U1              	100.00%		F6S6A5              	100.00%
Bootstrap support for Q752U1 as seed ortholog is 100%.
Bootstrap support for F6S6A5 as seed ortholog is 100%.

Group of orthologs #761. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:201 C.intestinalis:201

Q75B77              	100.00%		F6R7I5              	100.00%
Bootstrap support for Q75B77 as seed ortholog is 100%.
Bootstrap support for F6R7I5 as seed ortholog is 100%.

Group of orthologs #762. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:201 C.intestinalis:201

Q75DV1              	100.00%		F6QS20              	100.00%
Bootstrap support for Q75DV1 as seed ortholog is 100%.
Bootstrap support for F6QS20 as seed ortholog is 100%.

Group of orthologs #763. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:201 C.intestinalis:201

Q751U6              	100.00%		F6X5M5              	100.00%
Bootstrap support for Q751U6 as seed ortholog is 100%.
Bootstrap support for F6X5M5 as seed ortholog is 100%.

Group of orthologs #764. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:201 C.intestinalis:201

Q755F6              	100.00%		F7B391              	100.00%
Bootstrap support for Q755F6 as seed ortholog is 100%.
Bootstrap support for F7B391 as seed ortholog is 100%.

Group of orthologs #765. Best score 200 bits
Score difference with first non-orthologous sequence - A.gossypii:200 C.intestinalis:200

Q75B62              	100.00%		F6ZN66              	100.00%
Bootstrap support for Q75B62 as seed ortholog is 100%.
Bootstrap support for F6ZN66 as seed ortholog is 100%.

Group of orthologs #766. Best score 200 bits
Score difference with first non-orthologous sequence - A.gossypii:200 C.intestinalis:200

Q755I4              	100.00%		H2XPW5              	100.00%
Bootstrap support for Q755I4 as seed ortholog is 100%.
Bootstrap support for H2XPW5 as seed ortholog is 100%.

Group of orthologs #767. Best score 200 bits
Score difference with first non-orthologous sequence - A.gossypii:200 C.intestinalis:200

Q751M1              	100.00%		H2XSU1              	100.00%
Bootstrap support for Q751M1 as seed ortholog is 100%.
Bootstrap support for H2XSU1 as seed ortholog is 100%.

Group of orthologs #768. Best score 200 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.intestinalis:17

Q756N2              	100.00%		H2XR98              	100.00%
Bootstrap support for Q756N2 as seed ortholog is 98%.
Bootstrap support for H2XR98 as seed ortholog is 63%.
Alternative seed ortholog is F6YEI6 (17 bits away from this cluster)

Group of orthologs #769. Best score 200 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.intestinalis:6

Q75B39              	100.00%		H2Y3T6              	100.00%
Bootstrap support for Q75B39 as seed ortholog is 99%.
Bootstrap support for H2Y3T6 as seed ortholog is 57%.
Alternative seed ortholog is H2XXH6 (6 bits away from this cluster)

Group of orthologs #770. Best score 199 bits
Score difference with first non-orthologous sequence - A.gossypii:199 C.intestinalis:199

Q74ZU8              	100.00%		F6YGN3              	100.00%
                    	       		F7A8J9              	17.92%
Bootstrap support for Q74ZU8 as seed ortholog is 100%.
Bootstrap support for F6YGN3 as seed ortholog is 100%.

Group of orthologs #771. Best score 199 bits
Score difference with first non-orthologous sequence - A.gossypii:199 C.intestinalis:199

Q754J0              	100.00%		F6YCP6              	100.00%
Bootstrap support for Q754J0 as seed ortholog is 100%.
Bootstrap support for F6YCP6 as seed ortholog is 100%.

Group of orthologs #772. Best score 199 bits
Score difference with first non-orthologous sequence - A.gossypii:199 C.intestinalis:199

Q759E4              	100.00%		H2XMX2              	100.00%
Bootstrap support for Q759E4 as seed ortholog is 100%.
Bootstrap support for H2XMX2 as seed ortholog is 100%.

Group of orthologs #773. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 C.intestinalis:198

Q754Q0              	100.00%		F6SGU7              	100.00%
                    	       		H2Y279              	10.00%
Bootstrap support for Q754Q0 as seed ortholog is 100%.
Bootstrap support for F6SGU7 as seed ortholog is 100%.

Group of orthologs #774. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 C.intestinalis:198

Q757V8              	100.00%		F6Q021              	100.00%
Bootstrap support for Q757V8 as seed ortholog is 100%.
Bootstrap support for F6Q021 as seed ortholog is 100%.

Group of orthologs #775. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:22 C.intestinalis:198

Q757T6              	100.00%		F6RXW9              	100.00%
Bootstrap support for Q757T6 as seed ortholog is 89%.
Bootstrap support for F6RXW9 as seed ortholog is 100%.

Group of orthologs #776. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 C.intestinalis:198

Q75C07              	100.00%		H2XP26              	100.00%
Bootstrap support for Q75C07 as seed ortholog is 100%.
Bootstrap support for H2XP26 as seed ortholog is 100%.

Group of orthologs #777. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 C.intestinalis:56

Q756G4              	100.00%		H2XUL1              	100.00%
Bootstrap support for Q756G4 as seed ortholog is 100%.
Bootstrap support for H2XUL1 as seed ortholog is 99%.

Group of orthologs #778. Best score 197 bits
Score difference with first non-orthologous sequence - A.gossypii:197 C.intestinalis:197

Q759T2              	100.00%		F6UMM5              	100.00%
Bootstrap support for Q759T2 as seed ortholog is 100%.
Bootstrap support for F6UMM5 as seed ortholog is 100%.

Group of orthologs #779. Best score 197 bits
Score difference with first non-orthologous sequence - A.gossypii:125 C.intestinalis:91

Q759K2              	100.00%		F6UUV9              	100.00%
Bootstrap support for Q759K2 as seed ortholog is 99%.
Bootstrap support for F6UUV9 as seed ortholog is 98%.

Group of orthologs #780. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:83 C.intestinalis:75

Q757J1              	100.00%		F6Y403              	100.00%
Q751M5              	34.40%		H2XPY5              	20.17%
Bootstrap support for Q757J1 as seed ortholog is 95%.
Bootstrap support for F6Y403 as seed ortholog is 93%.

Group of orthologs #781. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.intestinalis:67

Q74Z34              	100.00%		F6RGX1              	100.00%
Bootstrap support for Q74Z34 as seed ortholog is 100%.
Bootstrap support for F6RGX1 as seed ortholog is 99%.

Group of orthologs #782. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.intestinalis:196

Q757Z7              	100.00%		F6TB52              	100.00%
Bootstrap support for Q757Z7 as seed ortholog is 100%.
Bootstrap support for F6TB52 as seed ortholog is 100%.

Group of orthologs #783. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.intestinalis:196

Q759V1              	100.00%		F6TAD8              	100.00%
Bootstrap support for Q759V1 as seed ortholog is 100%.
Bootstrap support for F6TAD8 as seed ortholog is 100%.

Group of orthologs #784. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.intestinalis:196

Q75E78              	100.00%		F6UAZ6              	100.00%
Bootstrap support for Q75E78 as seed ortholog is 100%.
Bootstrap support for F6UAZ6 as seed ortholog is 100%.

Group of orthologs #785. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.intestinalis:196

Q754V6              	100.00%		F6Y6X7              	100.00%
Bootstrap support for Q754V6 as seed ortholog is 100%.
Bootstrap support for F6Y6X7 as seed ortholog is 100%.

Group of orthologs #786. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.intestinalis:196

Q75BS9              	100.00%		F6VW40              	100.00%
Bootstrap support for Q75BS9 as seed ortholog is 100%.
Bootstrap support for F6VW40 as seed ortholog is 100%.

Group of orthologs #787. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.intestinalis:196

Q75BS8              	100.00%		F6XEQ3              	100.00%
Bootstrap support for Q75BS8 as seed ortholog is 100%.
Bootstrap support for F6XEQ3 as seed ortholog is 100%.

Group of orthologs #788. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.intestinalis:196

Q752B3              	100.00%		F7AP04              	100.00%
Bootstrap support for Q752B3 as seed ortholog is 100%.
Bootstrap support for F7AP04 as seed ortholog is 100%.

Group of orthologs #789. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.intestinalis:196

Q75AQ1              	100.00%		F6YGG6              	100.00%
Bootstrap support for Q75AQ1 as seed ortholog is 100%.
Bootstrap support for F6YGG6 as seed ortholog is 100%.

Group of orthologs #790. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.intestinalis:196

Q759L8              	100.00%		H2XXH1              	100.00%
Bootstrap support for Q759L8 as seed ortholog is 100%.
Bootstrap support for H2XXH1 as seed ortholog is 100%.

Group of orthologs #791. Best score 195 bits
Score difference with first non-orthologous sequence - A.gossypii:195 C.intestinalis:195

Q74ZW4              	100.00%		F6X5U2              	100.00%
Bootstrap support for Q74ZW4 as seed ortholog is 100%.
Bootstrap support for F6X5U2 as seed ortholog is 100%.

Group of orthologs #792. Best score 195 bits
Score difference with first non-orthologous sequence - A.gossypii:195 C.intestinalis:195

Q75DW4              	100.00%		F6V9A1              	100.00%
Bootstrap support for Q75DW4 as seed ortholog is 100%.
Bootstrap support for F6V9A1 as seed ortholog is 100%.

Group of orthologs #793. Best score 195 bits
Score difference with first non-orthologous sequence - A.gossypii:195 C.intestinalis:195

Q75BY0              	100.00%		F6WSV3              	100.00%
Bootstrap support for Q75BY0 as seed ortholog is 100%.
Bootstrap support for F6WSV3 as seed ortholog is 100%.

Group of orthologs #794. Best score 194 bits
Score difference with first non-orthologous sequence - A.gossypii:194 C.intestinalis:194

Q755M0              	100.00%		F6Z3S0              	100.00%
Bootstrap support for Q755M0 as seed ortholog is 100%.
Bootstrap support for F6Z3S0 as seed ortholog is 100%.

Group of orthologs #795. Best score 194 bits
Score difference with first non-orthologous sequence - A.gossypii:194 C.intestinalis:194

Q756E0              	100.00%		F7AH61              	100.00%
Bootstrap support for Q756E0 as seed ortholog is 100%.
Bootstrap support for F7AH61 as seed ortholog is 100%.

Group of orthologs #796. Best score 194 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.intestinalis:86

Q75CE7              	100.00%		H2XPL6              	100.00%
Bootstrap support for Q75CE7 as seed ortholog is 98%.
Bootstrap support for H2XPL6 as seed ortholog is 99%.

Group of orthologs #797. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:193 C.intestinalis:193

Q75DK2              	100.00%		F6PPP3              	100.00%
Bootstrap support for Q75DK2 as seed ortholog is 100%.
Bootstrap support for F6PPP3 as seed ortholog is 100%.

Group of orthologs #798. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:148 C.intestinalis:193

Q759W2              	100.00%		F6V6S8              	100.00%
Bootstrap support for Q759W2 as seed ortholog is 99%.
Bootstrap support for F6V6S8 as seed ortholog is 100%.

Group of orthologs #799. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:193 C.intestinalis:76

Q75DL6              	100.00%		F6U8M8              	100.00%
Bootstrap support for Q75DL6 as seed ortholog is 100%.
Bootstrap support for F6U8M8 as seed ortholog is 99%.

Group of orthologs #800. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:193 C.intestinalis:193

Q751B4              	100.00%		F6YYY1              	100.00%
Bootstrap support for Q751B4 as seed ortholog is 100%.
Bootstrap support for F6YYY1 as seed ortholog is 100%.

Group of orthologs #801. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:193 C.intestinalis:193

Q74ZA3              	100.00%		F7AEP2              	100.00%
Bootstrap support for Q74ZA3 as seed ortholog is 100%.
Bootstrap support for F7AEP2 as seed ortholog is 100%.

Group of orthologs #802. Best score 192 bits
Score difference with first non-orthologous sequence - A.gossypii:192 C.intestinalis:192

Q754M7              	100.00%		F7B4M8              	100.00%
                    	       		F7BE27              	30.25%
                    	       		F6Y8L3              	29.36%
                    	       		F6YI37              	13.71%
                    	       		F6ST69              	12.22%
                    	       		F7BJZ5              	6.11%
Bootstrap support for Q754M7 as seed ortholog is 100%.
Bootstrap support for F7B4M8 as seed ortholog is 100%.

Group of orthologs #803. Best score 192 bits
Score difference with first non-orthologous sequence - A.gossypii:35 C.intestinalis:123

Q750M1              	100.00%		F6XB39              	100.00%
Bootstrap support for Q750M1 as seed ortholog is 78%.
Bootstrap support for F6XB39 as seed ortholog is 99%.

Group of orthologs #804. Best score 192 bits
Score difference with first non-orthologous sequence - A.gossypii:192 C.intestinalis:192

Q75F60              	100.00%		F7BF26              	100.00%
Bootstrap support for Q75F60 as seed ortholog is 100%.
Bootstrap support for F7BF26 as seed ortholog is 100%.

Group of orthologs #805. Best score 192 bits
Score difference with first non-orthologous sequence - A.gossypii:192 C.intestinalis:192

Q758L9              	100.00%		H2XY62              	100.00%
Bootstrap support for Q758L9 as seed ortholog is 100%.
Bootstrap support for H2XY62 as seed ortholog is 100%.

Group of orthologs #806. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 C.intestinalis:191

Q759Q8              	100.00%		F6PM75              	100.00%
Bootstrap support for Q759Q8 as seed ortholog is 100%.
Bootstrap support for F6PM75 as seed ortholog is 100%.

Group of orthologs #807. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 C.intestinalis:191

Q754C9              	100.00%		F6VD75              	100.00%
Bootstrap support for Q754C9 as seed ortholog is 100%.
Bootstrap support for F6VD75 as seed ortholog is 100%.

Group of orthologs #808. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 C.intestinalis:191

Q755M2              	100.00%		F7A4X2              	100.00%
Bootstrap support for Q755M2 as seed ortholog is 100%.
Bootstrap support for F7A4X2 as seed ortholog is 100%.

Group of orthologs #809. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 C.intestinalis:191

Q755Z0              	100.00%		F7AUL7              	100.00%
Bootstrap support for Q755Z0 as seed ortholog is 100%.
Bootstrap support for F7AUL7 as seed ortholog is 100%.

Group of orthologs #810. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 C.intestinalis:68

Q757B7              	100.00%		H2XZG7              	100.00%
Bootstrap support for Q757B7 as seed ortholog is 100%.
Bootstrap support for H2XZG7 as seed ortholog is 99%.

Group of orthologs #811. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.intestinalis:190

Q75CJ5              	100.00%		F6X4T0              	100.00%
Bootstrap support for Q75CJ5 as seed ortholog is 100%.
Bootstrap support for F6X4T0 as seed ortholog is 100%.

Group of orthologs #812. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.intestinalis:190

Q75BR9              	100.00%		F6ZIP8              	100.00%
Bootstrap support for Q75BR9 as seed ortholog is 100%.
Bootstrap support for F6ZIP8 as seed ortholog is 100%.

Group of orthologs #813. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.intestinalis:190

Q753H0              	100.00%		H2XLW7              	100.00%
Bootstrap support for Q753H0 as seed ortholog is 100%.
Bootstrap support for H2XLW7 as seed ortholog is 100%.

Group of orthologs #814. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.intestinalis:190

Q757H7              	100.00%		H2XJG6              	100.00%
Bootstrap support for Q757H7 as seed ortholog is 100%.
Bootstrap support for H2XJG6 as seed ortholog is 100%.

Group of orthologs #815. Best score 189 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.intestinalis:63

Q75BA4              	100.00%		F6T2A6              	100.00%
                    	       		F6T2C1              	100.00%
Bootstrap support for Q75BA4 as seed ortholog is 100%.
Bootstrap support for F6T2A6 as seed ortholog is 99%.
Bootstrap support for F6T2C1 as seed ortholog is 99%.

Group of orthologs #816. Best score 189 bits
Score difference with first non-orthologous sequence - A.gossypii:189 C.intestinalis:91

Q75E33              	100.00%		L7N0U6              	100.00%
                    	       		F6PS78              	99.25%
Bootstrap support for Q75E33 as seed ortholog is 100%.
Bootstrap support for L7N0U6 as seed ortholog is 99%.

Group of orthologs #817. Best score 189 bits
Score difference with first non-orthologous sequence - A.gossypii:189 C.intestinalis:189

Q750V1              	100.00%		F6QID5              	100.00%
Bootstrap support for Q750V1 as seed ortholog is 100%.
Bootstrap support for F6QID5 as seed ortholog is 100%.

Group of orthologs #818. Best score 189 bits
Score difference with first non-orthologous sequence - A.gossypii:189 C.intestinalis:140

Q750P2              	100.00%		F6V6F4              	100.00%
Bootstrap support for Q750P2 as seed ortholog is 100%.
Bootstrap support for F6V6F4 as seed ortholog is 99%.

Group of orthologs #819. Best score 189 bits
Score difference with first non-orthologous sequence - A.gossypii:189 C.intestinalis:189

Q754L4              	100.00%		F6VCT2              	100.00%
Bootstrap support for Q754L4 as seed ortholog is 100%.
Bootstrap support for F6VCT2 as seed ortholog is 100%.

Group of orthologs #820. Best score 188 bits
Score difference with first non-orthologous sequence - A.gossypii:188 C.intestinalis:188

Q753W2              	100.00%		F7B2Q1              	100.00%
Bootstrap support for Q753W2 as seed ortholog is 100%.
Bootstrap support for F7B2Q1 as seed ortholog is 100%.

Group of orthologs #821. Best score 188 bits
Score difference with first non-orthologous sequence - A.gossypii:188 C.intestinalis:188

Q756A4              	100.00%		F7B1W3              	100.00%
Bootstrap support for Q756A4 as seed ortholog is 100%.
Bootstrap support for F7B1W3 as seed ortholog is 100%.

Group of orthologs #822. Best score 188 bits
Score difference with first non-orthologous sequence - A.gossypii:60 C.intestinalis:20

Q75AK9              	100.00%		Q86SD3              	100.00%
Bootstrap support for Q75AK9 as seed ortholog is 88%.
Bootstrap support for Q86SD3 as seed ortholog is 65%.
Alternative seed ortholog is F6Z465 (20 bits away from this cluster)

Group of orthologs #823. Best score 187 bits
Score difference with first non-orthologous sequence - A.gossypii:187 C.intestinalis:187

Q74Z38              	100.00%		H2XQS5              	100.00%
                    	       		F7ADF2              	56.51%
Bootstrap support for Q74Z38 as seed ortholog is 100%.
Bootstrap support for H2XQS5 as seed ortholog is 100%.

Group of orthologs #824. Best score 187 bits
Score difference with first non-orthologous sequence - A.gossypii:187 C.intestinalis:187

Q758Y8              	100.00%		F6YGL5              	100.00%
Bootstrap support for Q758Y8 as seed ortholog is 100%.
Bootstrap support for F6YGL5 as seed ortholog is 100%.

Group of orthologs #825. Best score 187 bits
Score difference with first non-orthologous sequence - A.gossypii:187 C.intestinalis:187

Q75AB1              	100.00%		F7ACM5              	100.00%
Bootstrap support for Q75AB1 as seed ortholog is 100%.
Bootstrap support for F7ACM5 as seed ortholog is 100%.

Group of orthologs #826. Best score 187 bits
Score difference with first non-orthologous sequence - A.gossypii:187 C.intestinalis:187

Q75F75              	100.00%		H2XSL3              	100.00%
Bootstrap support for Q75F75 as seed ortholog is 100%.
Bootstrap support for H2XSL3 as seed ortholog is 100%.

Group of orthologs #827. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.intestinalis:186

Q74ZG3              	100.00%		F6X4A0              	100.00%
Bootstrap support for Q74ZG3 as seed ortholog is 100%.
Bootstrap support for F6X4A0 as seed ortholog is 100%.

Group of orthologs #828. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.intestinalis:186

Q754R9              	100.00%		F6VIA9              	100.00%
Bootstrap support for Q754R9 as seed ortholog is 100%.
Bootstrap support for F6VIA9 as seed ortholog is 100%.

Group of orthologs #829. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.intestinalis:40

Q75BN9              	100.00%		F6WXJ5              	100.00%
Bootstrap support for Q75BN9 as seed ortholog is 100%.
Bootstrap support for F6WXJ5 as seed ortholog is 87%.

Group of orthologs #830. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:13 C.intestinalis:106

Q75AL4              	100.00%		F6ZGS5              	100.00%
Bootstrap support for Q75AL4 as seed ortholog is 62%.
Alternative seed ortholog is Q75C62 (13 bits away from this cluster)
Bootstrap support for F6ZGS5 as seed ortholog is 99%.

Group of orthologs #831. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.intestinalis:185

Q75EC1              	100.00%		H2XUS4              	100.00%
Q75F06              	7.07%		
Bootstrap support for Q75EC1 as seed ortholog is 100%.
Bootstrap support for H2XUS4 as seed ortholog is 100%.

Group of orthologs #832. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.intestinalis:117

Q754U1              	100.00%		H2XW76              	100.00%
Bootstrap support for Q754U1 as seed ortholog is 100%.
Bootstrap support for H2XW76 as seed ortholog is 99%.

Group of orthologs #833. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.intestinalis:185

Q75CS4              	100.00%		Q1RL58              	100.00%
Bootstrap support for Q75CS4 as seed ortholog is 100%.
Bootstrap support for Q1RL58 as seed ortholog is 100%.

Group of orthologs #834. Best score 184 bits
Score difference with first non-orthologous sequence - A.gossypii:184 C.intestinalis:184

Q75ET0              	100.00%		F6UUL4              	100.00%
Bootstrap support for Q75ET0 as seed ortholog is 100%.
Bootstrap support for F6UUL4 as seed ortholog is 100%.

Group of orthologs #835. Best score 184 bits
Score difference with first non-orthologous sequence - A.gossypii:184 C.intestinalis:184

P62583              	100.00%		F7B376              	100.00%
Bootstrap support for P62583 as seed ortholog is 100%.
Bootstrap support for F7B376 as seed ortholog is 100%.

Group of orthologs #836. Best score 183 bits
Score difference with first non-orthologous sequence - A.gossypii:27 C.intestinalis:62

Q75B13              	100.00%		F6WNH9              	100.00%
                    	       		F6X3P0              	10.99%
Bootstrap support for Q75B13 as seed ortholog is 83%.
Bootstrap support for F6WNH9 as seed ortholog is 98%.

Group of orthologs #837. Best score 183 bits
Score difference with first non-orthologous sequence - A.gossypii:139 C.intestinalis:132

Q75CL8              	100.00%		F6QDG1              	100.00%
Bootstrap support for Q75CL8 as seed ortholog is 99%.
Bootstrap support for F6QDG1 as seed ortholog is 99%.

Group of orthologs #838. Best score 183 bits
Score difference with first non-orthologous sequence - A.gossypii:183 C.intestinalis:183

Q759L9              	100.00%		F6TRZ2              	100.00%
Bootstrap support for Q759L9 as seed ortholog is 100%.
Bootstrap support for F6TRZ2 as seed ortholog is 100%.

Group of orthologs #839. Best score 183 bits
Score difference with first non-orthologous sequence - A.gossypii:183 C.intestinalis:183

Q75E32              	100.00%		F6TC91              	100.00%
Bootstrap support for Q75E32 as seed ortholog is 100%.
Bootstrap support for F6TC91 as seed ortholog is 100%.

Group of orthologs #840. Best score 183 bits
Score difference with first non-orthologous sequence - A.gossypii:183 C.intestinalis:183

Q755I0              	100.00%		F6Z0E0              	100.00%
Bootstrap support for Q755I0 as seed ortholog is 100%.
Bootstrap support for F6Z0E0 as seed ortholog is 100%.

Group of orthologs #841. Best score 183 bits
Score difference with first non-orthologous sequence - A.gossypii:183 C.intestinalis:183

Q759N6              	100.00%		H2XZ04              	100.00%
Bootstrap support for Q759N6 as seed ortholog is 100%.
Bootstrap support for H2XZ04 as seed ortholog is 100%.

Group of orthologs #842. Best score 182 bits
Score difference with first non-orthologous sequence - A.gossypii:22 C.intestinalis:18

Q755S7              	100.00%		F6Z987              	100.00%
                    	       		F6TB77              	21.39%
Bootstrap support for Q755S7 as seed ortholog is 62%.
Alternative seed ortholog is Q8J1G1 (22 bits away from this cluster)
Bootstrap support for F6Z987 as seed ortholog is 70%.
Alternative seed ortholog is F7AQG9 (18 bits away from this cluster)

Group of orthologs #843. Best score 182 bits
Score difference with first non-orthologous sequence - A.gossypii:182 C.intestinalis:182

Q754Z4              	100.00%		F6WAT8              	100.00%
Bootstrap support for Q754Z4 as seed ortholog is 100%.
Bootstrap support for F6WAT8 as seed ortholog is 100%.

Group of orthologs #844. Best score 181 bits
Score difference with first non-orthologous sequence - A.gossypii:181 C.intestinalis:181

Q757L4              	100.00%		F6QI05              	100.00%
Q74ZL4              	98.63%		
Bootstrap support for Q757L4 as seed ortholog is 100%.
Bootstrap support for F6QI05 as seed ortholog is 100%.

Group of orthologs #845. Best score 181 bits
Score difference with first non-orthologous sequence - A.gossypii:181 C.intestinalis:181

Q75BN3              	100.00%		F6S8Z0              	100.00%
Bootstrap support for Q75BN3 as seed ortholog is 100%.
Bootstrap support for F6S8Z0 as seed ortholog is 100%.

Group of orthologs #846. Best score 181 bits
Score difference with first non-orthologous sequence - A.gossypii:181 C.intestinalis:181

Q752N5              	100.00%		F6Y1N2              	100.00%
Bootstrap support for Q752N5 as seed ortholog is 100%.
Bootstrap support for F6Y1N2 as seed ortholog is 100%.

Group of orthologs #847. Best score 181 bits
Score difference with first non-orthologous sequence - A.gossypii:181 C.intestinalis:181

Q75E31              	100.00%		H2Y1D7              	100.00%
Bootstrap support for Q75E31 as seed ortholog is 100%.
Bootstrap support for H2Y1D7 as seed ortholog is 100%.

Group of orthologs #848. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.intestinalis:180

Q753R8              	100.00%		F6PP61              	100.00%
Bootstrap support for Q753R8 as seed ortholog is 100%.
Bootstrap support for F6PP61 as seed ortholog is 100%.

Group of orthologs #849. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:95 C.intestinalis:124

Q75EH7              	100.00%		F6SP32              	100.00%
Bootstrap support for Q75EH7 as seed ortholog is 95%.
Bootstrap support for F6SP32 as seed ortholog is 98%.

Group of orthologs #850. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:48

Q756N8              	100.00%		F6WCV2              	100.00%
Bootstrap support for Q756N8 as seed ortholog is 99%.
Bootstrap support for F6WCV2 as seed ortholog is 95%.

Group of orthologs #851. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.intestinalis:180

Q75CP5              	100.00%		F6UIW1              	100.00%
Bootstrap support for Q75CP5 as seed ortholog is 100%.
Bootstrap support for F6UIW1 as seed ortholog is 100%.

Group of orthologs #852. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.intestinalis:180

Q754N8              	100.00%		F6YB21              	100.00%
Bootstrap support for Q754N8 as seed ortholog is 100%.
Bootstrap support for F6YB21 as seed ortholog is 100%.

Group of orthologs #853. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.intestinalis:180

Q751C7              	100.00%		F7AEV2              	100.00%
Bootstrap support for Q751C7 as seed ortholog is 100%.
Bootstrap support for F7AEV2 as seed ortholog is 100%.

Group of orthologs #854. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.intestinalis:180

Q755M8              	100.00%		H2XSX6              	100.00%
Bootstrap support for Q755M8 as seed ortholog is 100%.
Bootstrap support for H2XSX6 as seed ortholog is 100%.

Group of orthologs #855. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:7 C.intestinalis:33

Q75EI0              	100.00%		H2XKH3              	100.00%
Bootstrap support for Q75EI0 as seed ortholog is 56%.
Alternative seed ortholog is Q75A51 (7 bits away from this cluster)
Bootstrap support for H2XKH3 as seed ortholog is 87%.

Group of orthologs #856. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:88

Q75F38              	100.00%		H2XMA1              	100.00%
Bootstrap support for Q75F38 as seed ortholog is 100%.
Bootstrap support for H2XMA1 as seed ortholog is 100%.

Group of orthologs #857. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.intestinalis:180

Q757T2              	100.00%		H2Y3L9              	100.00%
Bootstrap support for Q757T2 as seed ortholog is 100%.
Bootstrap support for H2Y3L9 as seed ortholog is 100%.

Group of orthologs #858. Best score 179 bits
Score difference with first non-orthologous sequence - A.gossypii:179 C.intestinalis:179

Q74ZH4              	100.00%		F6UUV5              	100.00%
Bootstrap support for Q74ZH4 as seed ortholog is 100%.
Bootstrap support for F6UUV5 as seed ortholog is 100%.

Group of orthologs #859. Best score 179 bits
Score difference with first non-orthologous sequence - A.gossypii:179 C.intestinalis:179

Q757A4              	100.00%		F6TCF8              	100.00%
Bootstrap support for Q757A4 as seed ortholog is 100%.
Bootstrap support for F6TCF8 as seed ortholog is 100%.

Group of orthologs #860. Best score 179 bits
Score difference with first non-orthologous sequence - A.gossypii:179 C.intestinalis:87

Q757P1              	100.00%		F6TTI3              	100.00%
Bootstrap support for Q757P1 as seed ortholog is 100%.
Bootstrap support for F6TTI3 as seed ortholog is 98%.

Group of orthologs #861. Best score 179 bits
Score difference with first non-orthologous sequence - A.gossypii:24 C.intestinalis:54

Q750M2              	100.00%		F7API1              	100.00%
Bootstrap support for Q750M2 as seed ortholog is 74%.
Alternative seed ortholog is Q750J8 (24 bits away from this cluster)
Bootstrap support for F7API1 as seed ortholog is 92%.

Group of orthologs #862. Best score 178 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.intestinalis:102

Q74ZW2              	100.00%		F6SZ54              	100.00%
Bootstrap support for Q74ZW2 as seed ortholog is 87%.
Bootstrap support for F6SZ54 as seed ortholog is 99%.

Group of orthologs #863. Best score 178 bits
Score difference with first non-orthologous sequence - A.gossypii:178 C.intestinalis:178

Q74ZF9              	100.00%		F6XWN6              	100.00%
Bootstrap support for Q74ZF9 as seed ortholog is 100%.
Bootstrap support for F6XWN6 as seed ortholog is 100%.

Group of orthologs #864. Best score 178 bits
Score difference with first non-orthologous sequence - A.gossypii:178 C.intestinalis:43

Q75CF2              	100.00%		H2XY03              	100.00%
Bootstrap support for Q75CF2 as seed ortholog is 100%.
Bootstrap support for H2XY03 as seed ortholog is 90%.

Group of orthologs #865. Best score 177 bits
Score difference with first non-orthologous sequence - A.gossypii:177 C.intestinalis:177

Q751Z8              	100.00%		F6TCT1              	100.00%
                    	       		F6XL93              	23.62%
Bootstrap support for Q751Z8 as seed ortholog is 100%.
Bootstrap support for F6TCT1 as seed ortholog is 100%.

Group of orthologs #866. Best score 177 bits
Score difference with first non-orthologous sequence - A.gossypii:177 C.intestinalis:177

Q75CJ6              	100.00%		F6QWW6              	100.00%
Bootstrap support for Q75CJ6 as seed ortholog is 100%.
Bootstrap support for F6QWW6 as seed ortholog is 100%.

Group of orthologs #867. Best score 177 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.intestinalis:7

Q75BV1              	100.00%		F6UHS2              	100.00%
Bootstrap support for Q75BV1 as seed ortholog is 99%.
Bootstrap support for F6UHS2 as seed ortholog is 61%.
Alternative seed ortholog is F6VN10 (7 bits away from this cluster)

Group of orthologs #868. Best score 177 bits
Score difference with first non-orthologous sequence - A.gossypii:177 C.intestinalis:177

Q75AT1              	100.00%		F6X1E1              	100.00%
Bootstrap support for Q75AT1 as seed ortholog is 100%.
Bootstrap support for F6X1E1 as seed ortholog is 100%.

Group of orthologs #869. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.intestinalis:176

Q75C79              	100.00%		F6VMS4              	100.00%
Q753V1              	31.43%		
Q75AS9              	31.43%		
Bootstrap support for Q75C79 as seed ortholog is 100%.
Bootstrap support for F6VMS4 as seed ortholog is 100%.

Group of orthologs #870. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:24 C.intestinalis:90

Q756A1              	100.00%		F6PIE8              	100.00%
Bootstrap support for Q756A1 as seed ortholog is 76%.
Bootstrap support for F6PIE8 as seed ortholog is 99%.

Group of orthologs #871. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.intestinalis:176

Q758L5              	100.00%		F6SNU1              	100.00%
Bootstrap support for Q758L5 as seed ortholog is 100%.
Bootstrap support for F6SNU1 as seed ortholog is 100%.

Group of orthologs #872. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.intestinalis:176

Q754M0              	100.00%		F6UFA9              	100.00%
Bootstrap support for Q754M0 as seed ortholog is 100%.
Bootstrap support for F6UFA9 as seed ortholog is 100%.

Group of orthologs #873. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.intestinalis:176

Q75C84              	100.00%		F6VII3              	100.00%
Bootstrap support for Q75C84 as seed ortholog is 100%.
Bootstrap support for F6VII3 as seed ortholog is 100%.

Group of orthologs #874. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.intestinalis:176

Q756I6              	100.00%		F6YBU7              	100.00%
Bootstrap support for Q756I6 as seed ortholog is 100%.
Bootstrap support for F6YBU7 as seed ortholog is 100%.

Group of orthologs #875. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.intestinalis:176

Q75D08              	100.00%		F6WEC9              	100.00%
Bootstrap support for Q75D08 as seed ortholog is 100%.
Bootstrap support for F6WEC9 as seed ortholog is 100%.

Group of orthologs #876. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.intestinalis:176

Q758U5              	100.00%		F7B2L3              	100.00%
Bootstrap support for Q758U5 as seed ortholog is 100%.
Bootstrap support for F7B2L3 as seed ortholog is 100%.

Group of orthologs #877. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.intestinalis:119

Q75D68              	100.00%		H2XQ34              	100.00%
Bootstrap support for Q75D68 as seed ortholog is 100%.
Bootstrap support for H2XQ34 as seed ortholog is 99%.

Group of orthologs #878. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.intestinalis:175

Q752N9              	100.00%		F6PHI9              	100.00%
Bootstrap support for Q752N9 as seed ortholog is 100%.
Bootstrap support for F6PHI9 as seed ortholog is 100%.

Group of orthologs #879. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.intestinalis:53

Q750P3              	100.00%		F6U7X2              	100.00%
Bootstrap support for Q750P3 as seed ortholog is 100%.
Bootstrap support for F6U7X2 as seed ortholog is 90%.

Group of orthologs #880. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.intestinalis:60

Q758L4              	100.00%		F6RYV9              	100.00%
Bootstrap support for Q758L4 as seed ortholog is 91%.
Bootstrap support for F6RYV9 as seed ortholog is 92%.

Group of orthologs #881. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.intestinalis:175

Q75CU5              	100.00%		F6RE18              	100.00%
Bootstrap support for Q75CU5 as seed ortholog is 100%.
Bootstrap support for F6RE18 as seed ortholog is 100%.

Group of orthologs #882. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.intestinalis:175

Q75EG3              	100.00%		F6SM85              	100.00%
Bootstrap support for Q75EG3 as seed ortholog is 100%.
Bootstrap support for F6SM85 as seed ortholog is 100%.

Group of orthologs #883. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.intestinalis:175

Q756J1              	100.00%		F6YFP0              	100.00%
Bootstrap support for Q756J1 as seed ortholog is 99%.
Bootstrap support for F6YFP0 as seed ortholog is 100%.

Group of orthologs #884. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.intestinalis:15

Q756E7              	100.00%		F6ZIM0              	100.00%
Bootstrap support for Q756E7 as seed ortholog is 100%.
Bootstrap support for F6ZIM0 as seed ortholog is 65%.
Alternative seed ortholog is F6VKM8 (15 bits away from this cluster)

Group of orthologs #885. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.intestinalis:175

Q754I2              	100.00%		F7A2R6              	100.00%
Bootstrap support for Q754I2 as seed ortholog is 100%.
Bootstrap support for F7A2R6 as seed ortholog is 100%.

Group of orthologs #886. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.intestinalis:175

Q753F2              	100.00%		H2XYW2              	100.00%
Bootstrap support for Q753F2 as seed ortholog is 100%.
Bootstrap support for H2XYW2 as seed ortholog is 100%.

Group of orthologs #887. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.intestinalis:175

Q7YFV7              	100.00%		Q8HIN6              	100.00%
Bootstrap support for Q7YFV7 as seed ortholog is 100%.
Bootstrap support for Q8HIN6 as seed ortholog is 100%.

Group of orthologs #888. Best score 174 bits
Score difference with first non-orthologous sequence - A.gossypii:174 C.intestinalis:174

Q752R9              	100.00%		F6QE16              	100.00%
Bootstrap support for Q752R9 as seed ortholog is 100%.
Bootstrap support for F6QE16 as seed ortholog is 100%.

Group of orthologs #889. Best score 174 bits
Score difference with first non-orthologous sequence - A.gossypii:174 C.intestinalis:174

Q759X6              	100.00%		F6PPC0              	100.00%
Bootstrap support for Q759X6 as seed ortholog is 100%.
Bootstrap support for F6PPC0 as seed ortholog is 100%.

Group of orthologs #890. Best score 174 bits
Score difference with first non-orthologous sequence - A.gossypii:174 C.intestinalis:174

Q75FB4              	100.00%		F6QBE1              	100.00%
Bootstrap support for Q75FB4 as seed ortholog is 100%.
Bootstrap support for F6QBE1 as seed ortholog is 100%.

Group of orthologs #891. Best score 174 bits
Score difference with first non-orthologous sequence - A.gossypii:174 C.intestinalis:174

Q75EK1              	100.00%		F7BBJ6              	100.00%
Bootstrap support for Q75EK1 as seed ortholog is 100%.
Bootstrap support for F7BBJ6 as seed ortholog is 100%.

Group of orthologs #892. Best score 173 bits
Score difference with first non-orthologous sequence - A.gossypii:60 C.intestinalis:49

Q754E6              	100.00%		F6UUI1              	100.00%
Bootstrap support for Q754E6 as seed ortholog is 99%.
Bootstrap support for F6UUI1 as seed ortholog is 98%.

Group of orthologs #893. Best score 173 bits
Score difference with first non-orthologous sequence - A.gossypii:45 C.intestinalis:173

Q757T8              	100.00%		F6WPY5              	100.00%
Bootstrap support for Q757T8 as seed ortholog is 88%.
Bootstrap support for F6WPY5 as seed ortholog is 100%.

Group of orthologs #894. Best score 173 bits
Score difference with first non-orthologous sequence - A.gossypii:173 C.intestinalis:173

Q753I2              	100.00%		F6ZQX9              	100.00%
Bootstrap support for Q753I2 as seed ortholog is 100%.
Bootstrap support for F6ZQX9 as seed ortholog is 100%.

Group of orthologs #895. Best score 172 bits
Score difference with first non-orthologous sequence - A.gossypii:172 C.intestinalis:172

Q75E84              	100.00%		F6VF91              	100.00%
Bootstrap support for Q75E84 as seed ortholog is 100%.
Bootstrap support for F6VF91 as seed ortholog is 100%.

Group of orthologs #896. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:171 C.intestinalis:105

Q75B92              	100.00%		F6QXC2              	100.00%
Bootstrap support for Q75B92 as seed ortholog is 100%.
Bootstrap support for F6QXC2 as seed ortholog is 98%.

Group of orthologs #897. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:171 C.intestinalis:112

Q75E54              	100.00%		F6Q7P2              	100.00%
Bootstrap support for Q75E54 as seed ortholog is 100%.
Bootstrap support for F6Q7P2 as seed ortholog is 99%.

Group of orthologs #898. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:171 C.intestinalis:171

Q75FA8              	100.00%		F6WQB5              	100.00%
Bootstrap support for Q75FA8 as seed ortholog is 100%.
Bootstrap support for F6WQB5 as seed ortholog is 100%.

Group of orthologs #899. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:171 C.intestinalis:171

Q753E0              	100.00%		H2XT65              	100.00%
Bootstrap support for Q753E0 as seed ortholog is 100%.
Bootstrap support for H2XT65 as seed ortholog is 100%.

Group of orthologs #900. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:171 C.intestinalis:171

Q75AY5              	100.00%		H2XZ35              	100.00%
Bootstrap support for Q75AY5 as seed ortholog is 100%.
Bootstrap support for H2XZ35 as seed ortholog is 100%.

Group of orthologs #901. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.intestinalis:170

Q750D1              	100.00%		F6S360              	100.00%
Bootstrap support for Q750D1 as seed ortholog is 100%.
Bootstrap support for F6S360 as seed ortholog is 100%.

Group of orthologs #902. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.intestinalis:170

Q75AT6              	100.00%		F6S2C6              	100.00%
Bootstrap support for Q75AT6 as seed ortholog is 100%.
Bootstrap support for F6S2C6 as seed ortholog is 100%.

Group of orthologs #903. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.intestinalis:170

Q75F31              	100.00%		F6QBM2              	100.00%
Bootstrap support for Q75F31 as seed ortholog is 100%.
Bootstrap support for F6QBM2 as seed ortholog is 100%.

Group of orthologs #904. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.intestinalis:170

Q75B45              	100.00%		F6SSS9              	100.00%
Bootstrap support for Q75B45 as seed ortholog is 100%.
Bootstrap support for F6SSS9 as seed ortholog is 100%.

Group of orthologs #905. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.intestinalis:126

Q74ZQ9              	100.00%		F7ASM2              	100.00%
Bootstrap support for Q74ZQ9 as seed ortholog is 100%.
Bootstrap support for F7ASM2 as seed ortholog is 96%.

Group of orthologs #906. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.intestinalis:18

Q75EA9              	100.00%		F6W7N8              	100.00%
Bootstrap support for Q75EA9 as seed ortholog is 99%.
Bootstrap support for F6W7N8 as seed ortholog is 63%.
Alternative seed ortholog is H2Y3M9 (18 bits away from this cluster)

Group of orthologs #907. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.intestinalis:170

Q75ER0              	100.00%		H2Y197              	100.00%
Bootstrap support for Q75ER0 as seed ortholog is 100%.
Bootstrap support for H2Y197 as seed ortholog is 100%.

Group of orthologs #908. Best score 169 bits
Score difference with first non-orthologous sequence - A.gossypii:169 C.intestinalis:169

Q756Y7              	100.00%		F6TL19              	100.00%
Bootstrap support for Q756Y7 as seed ortholog is 100%.
Bootstrap support for F6TL19 as seed ortholog is 100%.

Group of orthologs #909. Best score 169 bits
Score difference with first non-orthologous sequence - A.gossypii:169 C.intestinalis:169

Q74ZT7              	100.00%		F6XTQ1              	100.00%
Bootstrap support for Q74ZT7 as seed ortholog is 100%.
Bootstrap support for F6XTQ1 as seed ortholog is 100%.

Group of orthologs #910. Best score 169 bits
Score difference with first non-orthologous sequence - A.gossypii:169 C.intestinalis:169

Q75EQ5              	100.00%		F6X0F3              	100.00%
Bootstrap support for Q75EQ5 as seed ortholog is 100%.
Bootstrap support for F6X0F3 as seed ortholog is 100%.

Group of orthologs #911. Best score 168 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.intestinalis:23

Q759V3              	100.00%		F6PJV8              	100.00%
Bootstrap support for Q759V3 as seed ortholog is 99%.
Bootstrap support for F6PJV8 as seed ortholog is 79%.

Group of orthologs #912. Best score 168 bits
Score difference with first non-orthologous sequence - A.gossypii:14 C.intestinalis:56

Q752R6              	100.00%		F7AFR6              	100.00%
Bootstrap support for Q752R6 as seed ortholog is 98%.
Bootstrap support for F7AFR6 as seed ortholog is 87%.

Group of orthologs #913. Best score 168 bits
Score difference with first non-orthologous sequence - A.gossypii:168 C.intestinalis:96

Q75AL9              	100.00%		F7B418              	100.00%
Bootstrap support for Q75AL9 as seed ortholog is 100%.
Bootstrap support for F7B418 as seed ortholog is 98%.

Group of orthologs #914. Best score 167 bits
Score difference with first non-orthologous sequence - A.gossypii:33 C.intestinalis:94

Q74ZV8              	100.00%		F6RD19              	100.00%
Bootstrap support for Q74ZV8 as seed ortholog is 76%.
Bootstrap support for F6RD19 as seed ortholog is 98%.

Group of orthologs #915. Best score 167 bits
Score difference with first non-orthologous sequence - A.gossypii:167 C.intestinalis:167

Q75AA8              	100.00%		F6WUG3              	100.00%
Bootstrap support for Q75AA8 as seed ortholog is 100%.
Bootstrap support for F6WUG3 as seed ortholog is 100%.

Group of orthologs #916. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:166 C.intestinalis:166

Q758B7              	100.00%		F7B6W8              	100.00%
Q757G3              	9.14%		
Bootstrap support for Q758B7 as seed ortholog is 100%.
Bootstrap support for F7B6W8 as seed ortholog is 100%.

Group of orthologs #917. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:166 C.intestinalis:166

Q75EA2              	100.00%		F6ZS04              	100.00%
Bootstrap support for Q75EA2 as seed ortholog is 100%.
Bootstrap support for F6ZS04 as seed ortholog is 100%.

Group of orthologs #918. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.intestinalis:44

Q751G7              	100.00%		H2XVE0              	100.00%
Bootstrap support for Q751G7 as seed ortholog is 97%.
Bootstrap support for H2XVE0 as seed ortholog is 94%.

Group of orthologs #919. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:166 C.intestinalis:166

Q752B0              	100.00%		H2Y1H7              	100.00%
Bootstrap support for Q752B0 as seed ortholog is 100%.
Bootstrap support for H2Y1H7 as seed ortholog is 100%.

Group of orthologs #920. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.intestinalis:165

Q757R2              	100.00%		F6V2M0              	100.00%
                    	       		F7AN60              	9.79%
                    	       		H2XS39              	7.91%
Bootstrap support for Q757R2 as seed ortholog is 100%.
Bootstrap support for F6V2M0 as seed ortholog is 100%.

Group of orthologs #921. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.intestinalis:165

Q750F7              	100.00%		F6R255              	100.00%
Bootstrap support for Q750F7 as seed ortholog is 100%.
Bootstrap support for F6R255 as seed ortholog is 100%.

Group of orthologs #922. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.intestinalis:165

Q75AU0              	100.00%		F6REI3              	100.00%
Bootstrap support for Q75AU0 as seed ortholog is 100%.
Bootstrap support for F6REI3 as seed ortholog is 100%.

Group of orthologs #923. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.intestinalis:165

Q759B6              	100.00%		F6XRI7              	100.00%
Bootstrap support for Q759B6 as seed ortholog is 100%.
Bootstrap support for F6XRI7 as seed ortholog is 100%.

Group of orthologs #924. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.intestinalis:56

Q757I9              	100.00%		F6ZDT1              	100.00%
Bootstrap support for Q757I9 as seed ortholog is 100%.
Bootstrap support for F6ZDT1 as seed ortholog is 99%.

Group of orthologs #925. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.intestinalis:47

Q751L8              	100.00%		H2Y0A0              	100.00%
Bootstrap support for Q751L8 as seed ortholog is 100%.
Bootstrap support for H2Y0A0 as seed ortholog is 97%.

Group of orthologs #926. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.intestinalis:165

Q751J4              	100.00%		H2Y1Y8              	100.00%
Bootstrap support for Q751J4 as seed ortholog is 100%.
Bootstrap support for H2Y1Y8 as seed ortholog is 100%.

Group of orthologs #927. Best score 164 bits
Score difference with first non-orthologous sequence - A.gossypii:164 C.intestinalis:120

Q752C6              	100.00%		F6VEU2              	100.00%
Bootstrap support for Q752C6 as seed ortholog is 100%.
Bootstrap support for F6VEU2 as seed ortholog is 99%.

Group of orthologs #928. Best score 164 bits
Score difference with first non-orthologous sequence - A.gossypii:164 C.intestinalis:164

Q759H8              	100.00%		F6UK51              	100.00%
Bootstrap support for Q759H8 as seed ortholog is 100%.
Bootstrap support for F6UK51 as seed ortholog is 100%.

Group of orthologs #929. Best score 164 bits
Score difference with first non-orthologous sequence - A.gossypii:164 C.intestinalis:164

Q758M6              	100.00%		F6Z8N3              	100.00%
Bootstrap support for Q758M6 as seed ortholog is 100%.
Bootstrap support for F6Z8N3 as seed ortholog is 100%.

Group of orthologs #930. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.intestinalis:53

Q75B41              	100.00%		F6PIZ2              	100.00%
Bootstrap support for Q75B41 as seed ortholog is 95%.
Bootstrap support for F6PIZ2 as seed ortholog is 92%.

Group of orthologs #931. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.intestinalis:163

Q750X1              	100.00%		F6TGK6              	100.00%
Bootstrap support for Q750X1 as seed ortholog is 100%.
Bootstrap support for F6TGK6 as seed ortholog is 100%.

Group of orthologs #932. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.intestinalis:163

Q75AQ8              	100.00%		F6YIJ5              	100.00%
Bootstrap support for Q75AQ8 as seed ortholog is 100%.
Bootstrap support for F6YIJ5 as seed ortholog is 100%.

Group of orthologs #933. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.intestinalis:163

Q757U9              	100.00%		H2XX92              	100.00%
Bootstrap support for Q757U9 as seed ortholog is 100%.
Bootstrap support for H2XX92 as seed ortholog is 100%.

Group of orthologs #934. Best score 162 bits
Score difference with first non-orthologous sequence - A.gossypii:162 C.intestinalis:83

Q75D84              	100.00%		F6VBG8              	100.00%
Bootstrap support for Q75D84 as seed ortholog is 100%.
Bootstrap support for F6VBG8 as seed ortholog is 99%.

Group of orthologs #935. Best score 162 bits
Score difference with first non-orthologous sequence - A.gossypii:43 C.intestinalis:50

Q758E7              	100.00%		F6Z8G0              	100.00%
Bootstrap support for Q758E7 as seed ortholog is 82%.
Bootstrap support for F6Z8G0 as seed ortholog is 90%.

Group of orthologs #936. Best score 161 bits
Score difference with first non-orthologous sequence - A.gossypii:161 C.intestinalis:161

Q758F3              	100.00%		F6QE62              	100.00%
Bootstrap support for Q758F3 as seed ortholog is 100%.
Bootstrap support for F6QE62 as seed ortholog is 100%.

Group of orthologs #937. Best score 161 bits
Score difference with first non-orthologous sequence - A.gossypii:161 C.intestinalis:161

Q75BD2              	100.00%		F7A429              	100.00%
Bootstrap support for Q75BD2 as seed ortholog is 100%.
Bootstrap support for F7A429 as seed ortholog is 100%.

Group of orthologs #938. Best score 161 bits
Score difference with first non-orthologous sequence - A.gossypii:161 C.intestinalis:78

Q751S7              	100.00%		H2XNN8              	100.00%
Bootstrap support for Q751S7 as seed ortholog is 100%.
Bootstrap support for H2XNN8 as seed ortholog is 97%.

Group of orthologs #939. Best score 161 bits
Score difference with first non-orthologous sequence - A.gossypii:161 C.intestinalis:161

Q75E96              	100.00%		F6ZNK2              	100.00%
Bootstrap support for Q75E96 as seed ortholog is 100%.
Bootstrap support for F6ZNK2 as seed ortholog is 100%.

Group of orthologs #940. Best score 161 bits
Score difference with first non-orthologous sequence - A.gossypii:161 C.intestinalis:161

Q753Z6              	100.00%		H2XTB6              	100.00%
Bootstrap support for Q753Z6 as seed ortholog is 100%.
Bootstrap support for H2XTB6 as seed ortholog is 100%.

Group of orthologs #941. Best score 160 bits
Score difference with first non-orthologous sequence - A.gossypii:160 C.intestinalis:160

Q75C61              	100.00%		F6RCC2              	100.00%
                    	       		I6L237              	97.10%
Bootstrap support for Q75C61 as seed ortholog is 100%.
Bootstrap support for F6RCC2 as seed ortholog is 100%.

Group of orthologs #942. Best score 160 bits
Score difference with first non-orthologous sequence - A.gossypii:160 C.intestinalis:160

Q754T6              	100.00%		F7BH38              	100.00%
                    	       		F6UCD8              	18.89%
Bootstrap support for Q754T6 as seed ortholog is 100%.
Bootstrap support for F7BH38 as seed ortholog is 100%.

Group of orthologs #943. Best score 160 bits
Score difference with first non-orthologous sequence - A.gossypii:160 C.intestinalis:160

Q753B3              	100.00%		F6RHG2              	100.00%
Bootstrap support for Q753B3 as seed ortholog is 100%.
Bootstrap support for F6RHG2 as seed ortholog is 100%.

Group of orthologs #944. Best score 160 bits
Score difference with first non-orthologous sequence - A.gossypii:160 C.intestinalis:160

Q75D60              	100.00%		F6V771              	100.00%
Bootstrap support for Q75D60 as seed ortholog is 100%.
Bootstrap support for F6V771 as seed ortholog is 100%.

Group of orthologs #945. Best score 160 bits
Score difference with first non-orthologous sequence - A.gossypii:160 C.intestinalis:160

Q750N2              	100.00%		F6ZXH6              	100.00%
Bootstrap support for Q750N2 as seed ortholog is 100%.
Bootstrap support for F6ZXH6 as seed ortholog is 100%.

Group of orthologs #946. Best score 160 bits
Score difference with first non-orthologous sequence - A.gossypii:160 C.intestinalis:160

Q756D2              	100.00%		H2XTF1              	100.00%
Bootstrap support for Q756D2 as seed ortholog is 100%.
Bootstrap support for H2XTF1 as seed ortholog is 100%.

Group of orthologs #947. Best score 159 bits
Score difference with first non-orthologous sequence - A.gossypii:159 C.intestinalis:159

Q74ZN1              	100.00%		F6PK80              	100.00%
Q752M6              	100.00%		F6QWK4              	17.06%
Bootstrap support for Q74ZN1 as seed ortholog is 100%.
Bootstrap support for Q752M6 as seed ortholog is 100%.
Bootstrap support for F6PK80 as seed ortholog is 100%.

Group of orthologs #948. Best score 159 bits
Score difference with first non-orthologous sequence - A.gossypii:159 C.intestinalis:159

Q756V2              	100.00%		F6Q4X5              	100.00%
Bootstrap support for Q756V2 as seed ortholog is 100%.
Bootstrap support for F6Q4X5 as seed ortholog is 100%.

Group of orthologs #949. Best score 159 bits
Score difference with first non-orthologous sequence - A.gossypii:159 C.intestinalis:159

Q753Q2              	100.00%		F6WM99              	100.00%
Bootstrap support for Q753Q2 as seed ortholog is 100%.
Bootstrap support for F6WM99 as seed ortholog is 100%.

Group of orthologs #950. Best score 159 bits
Score difference with first non-orthologous sequence - A.gossypii:159 C.intestinalis:159

Q75EG8              	100.00%		F6SZE1              	100.00%
Bootstrap support for Q75EG8 as seed ortholog is 100%.
Bootstrap support for F6SZE1 as seed ortholog is 100%.

Group of orthologs #951. Best score 159 bits
Score difference with first non-orthologous sequence - A.gossypii:159 C.intestinalis:69

Q75E75              	100.00%		F6Y7Y1              	100.00%
Bootstrap support for Q75E75 as seed ortholog is 100%.
Bootstrap support for F6Y7Y1 as seed ortholog is 98%.

Group of orthologs #952. Best score 159 bits
Score difference with first non-orthologous sequence - A.gossypii:159 C.intestinalis:159

Q755N5              	100.00%		H2XS37              	100.00%
Bootstrap support for Q755N5 as seed ortholog is 100%.
Bootstrap support for H2XS37 as seed ortholog is 100%.

Group of orthologs #953. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:20 C.intestinalis:30

Q751D1              	100.00%		F6PH64              	100.00%
Bootstrap support for Q751D1 as seed ortholog is 60%.
Alternative seed ortholog is Q755A5 (20 bits away from this cluster)
Bootstrap support for F6PH64 as seed ortholog is 73%.
Alternative seed ortholog is F6YS67 (30 bits away from this cluster)

Group of orthologs #954. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:158 C.intestinalis:158

Q75CC6              	100.00%		F6RLX1              	100.00%
Bootstrap support for Q75CC6 as seed ortholog is 100%.
Bootstrap support for F6RLX1 as seed ortholog is 100%.

Group of orthologs #955. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:158 C.intestinalis:158

Q753B1              	100.00%		F6VJL7              	100.00%
Bootstrap support for Q753B1 as seed ortholog is 100%.
Bootstrap support for F6VJL7 as seed ortholog is 100%.

Group of orthologs #956. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:158 C.intestinalis:158

Q754S7              	100.00%		F6WY47              	100.00%
Bootstrap support for Q754S7 as seed ortholog is 100%.
Bootstrap support for F6WY47 as seed ortholog is 100%.

Group of orthologs #957. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:158 C.intestinalis:158

Q754X9              	100.00%		F7B670              	100.00%
Bootstrap support for Q754X9 as seed ortholog is 100%.
Bootstrap support for F7B670 as seed ortholog is 100%.

Group of orthologs #958. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:113 C.intestinalis:158

Q759R2              	100.00%		H2XQC1              	100.00%
Bootstrap support for Q759R2 as seed ortholog is 99%.
Bootstrap support for H2XQC1 as seed ortholog is 100%.

Group of orthologs #959. Best score 157 bits
Score difference with first non-orthologous sequence - A.gossypii:157 C.intestinalis:157

Q754Y8              	100.00%		F6T2X1              	100.00%
Bootstrap support for Q754Y8 as seed ortholog is 100%.
Bootstrap support for F6T2X1 as seed ortholog is 100%.

Group of orthologs #960. Best score 157 bits
Score difference with first non-orthologous sequence - A.gossypii:157 C.intestinalis:157

Q758L8              	100.00%		F6W0Q4              	100.00%
Bootstrap support for Q758L8 as seed ortholog is 100%.
Bootstrap support for F6W0Q4 as seed ortholog is 100%.

Group of orthologs #961. Best score 157 bits
Score difference with first non-orthologous sequence - A.gossypii:157 C.intestinalis:157

Q75E60              	100.00%		F7AUY7              	100.00%
Bootstrap support for Q75E60 as seed ortholog is 100%.
Bootstrap support for F7AUY7 as seed ortholog is 100%.

Group of orthologs #962. Best score 157 bits
Score difference with first non-orthologous sequence - A.gossypii:157 C.intestinalis:100

Q75DI0              	100.00%		H2XLX4              	100.00%
Bootstrap support for Q75DI0 as seed ortholog is 100%.
Bootstrap support for H2XLX4 as seed ortholog is 99%.

Group of orthologs #963. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:156 C.intestinalis:156

Q759J8              	100.00%		F6RQZ5              	100.00%
Q75DV8              	100.00%		
Q75BI1              	12.18%		
Bootstrap support for Q759J8 as seed ortholog is 100%.
Bootstrap support for Q75DV8 as seed ortholog is 100%.
Bootstrap support for F6RQZ5 as seed ortholog is 100%.

Group of orthologs #964. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.intestinalis:72

Q75A60              	100.00%		F6YRX9              	100.00%
                    	       		F6TK16              	14.00%
                    	       		F6TA16              	6.00%
Bootstrap support for Q75A60 as seed ortholog is 99%.
Bootstrap support for F6YRX9 as seed ortholog is 98%.

Group of orthologs #965. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:156 C.intestinalis:57

Q75CL0              	100.00%		F6ZYB8              	100.00%
                    	       		F6Q9D5              	21.42%
                    	       		F6RCP1              	18.10%
Bootstrap support for Q75CL0 as seed ortholog is 100%.
Bootstrap support for F6ZYB8 as seed ortholog is 85%.

Group of orthologs #966. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:66

Q750Z0              	100.00%		F6QZM4              	100.00%
                    	       		H2XP52              	35.89%
Bootstrap support for Q750Z0 as seed ortholog is 99%.
Bootstrap support for F6QZM4 as seed ortholog is 97%.

Group of orthologs #967. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:156 C.intestinalis:156

Q75CR9              	100.00%		F6Q9P1              	100.00%
Bootstrap support for Q75CR9 as seed ortholog is 100%.
Bootstrap support for F6Q9P1 as seed ortholog is 100%.

Group of orthologs #968. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:156 C.intestinalis:156

Q750F9              	100.00%		F6ZYI6              	100.00%
Bootstrap support for Q750F9 as seed ortholog is 100%.
Bootstrap support for F6ZYI6 as seed ortholog is 100%.

Group of orthologs #969. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:156 C.intestinalis:156

Q756E6              	100.00%		F6Z998              	100.00%
Bootstrap support for Q756E6 as seed ortholog is 100%.
Bootstrap support for F6Z998 as seed ortholog is 100%.

Group of orthologs #970. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:88 C.intestinalis:98

Q75DM1              	100.00%		H2XWF2              	100.00%
Bootstrap support for Q75DM1 as seed ortholog is 98%.
Bootstrap support for H2XWF2 as seed ortholog is 99%.

Group of orthologs #971. Best score 155 bits
Score difference with first non-orthologous sequence - A.gossypii:10 C.intestinalis:155

Q75F47              	100.00%		F6RTW0              	100.00%
                    	       		H2XPX9              	24.16%
Bootstrap support for Q75F47 as seed ortholog is 98%.
Bootstrap support for F6RTW0 as seed ortholog is 100%.

Group of orthologs #972. Best score 155 bits
Score difference with first non-orthologous sequence - A.gossypii:155 C.intestinalis:7

Q74ZC8              	100.00%		F6R8G4              	100.00%
Bootstrap support for Q74ZC8 as seed ortholog is 100%.
Bootstrap support for F6R8G4 as seed ortholog is 50%.
Alternative seed ortholog is F6U8Q9 (7 bits away from this cluster)

Group of orthologs #973. Best score 155 bits
Score difference with first non-orthologous sequence - A.gossypii:155 C.intestinalis:155

Q751B5              	100.00%		F6RED0              	100.00%
Bootstrap support for Q751B5 as seed ortholog is 100%.
Bootstrap support for F6RED0 as seed ortholog is 100%.

Group of orthologs #974. Best score 155 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:69

Q75AF2              	100.00%		F6T7Y6              	100.00%
Bootstrap support for Q75AF2 as seed ortholog is 99%.
Bootstrap support for F6T7Y6 as seed ortholog is 99%.

Group of orthologs #975. Best score 155 bits
Score difference with first non-orthologous sequence - A.gossypii:155 C.intestinalis:155

Q75EM8              	100.00%		F6RZU6              	100.00%
Bootstrap support for Q75EM8 as seed ortholog is 100%.
Bootstrap support for F6RZU6 as seed ortholog is 100%.

Group of orthologs #976. Best score 155 bits
Score difference with first non-orthologous sequence - A.gossypii:155 C.intestinalis:155

Q755V0              	100.00%		F6WTW2              	100.00%
Bootstrap support for Q755V0 as seed ortholog is 100%.
Bootstrap support for F6WTW2 as seed ortholog is 100%.

Group of orthologs #977. Best score 155 bits
Score difference with first non-orthologous sequence - A.gossypii:155 C.intestinalis:155

Q75BB7              	100.00%		F7ATS3              	100.00%
Bootstrap support for Q75BB7 as seed ortholog is 100%.
Bootstrap support for F7ATS3 as seed ortholog is 100%.

Group of orthologs #978. Best score 155 bits
Score difference with first non-orthologous sequence - A.gossypii:155 C.intestinalis:155

Q751I2              	100.00%		H2XTJ5              	100.00%
Bootstrap support for Q751I2 as seed ortholog is 100%.
Bootstrap support for H2XTJ5 as seed ortholog is 100%.

Group of orthologs #979. Best score 154 bits
Score difference with first non-orthologous sequence - A.gossypii:154 C.intestinalis:154

Q752G1              	100.00%		F6TSS8              	100.00%
Bootstrap support for Q752G1 as seed ortholog is 100%.
Bootstrap support for F6TSS8 as seed ortholog is 100%.

Group of orthologs #980. Best score 154 bits
Score difference with first non-orthologous sequence - A.gossypii:105 C.intestinalis:52

Q75AV1              	100.00%		H2XNZ7              	100.00%
Bootstrap support for Q75AV1 as seed ortholog is 99%.
Bootstrap support for H2XNZ7 as seed ortholog is 98%.

Group of orthologs #981. Best score 154 bits
Score difference with first non-orthologous sequence - A.gossypii:154 C.intestinalis:154

Q754W7              	100.00%		H2Y233              	100.00%
Bootstrap support for Q754W7 as seed ortholog is 100%.
Bootstrap support for H2Y233 as seed ortholog is 100%.

Group of orthologs #982. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:153 C.intestinalis:153

Q754N5              	100.00%		Q5VHU5              	100.00%
Q75EJ7              	22.65%		Q5VHU3              	32.65%
Bootstrap support for Q754N5 as seed ortholog is 100%.
Bootstrap support for Q5VHU5 as seed ortholog is 100%.

Group of orthologs #983. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:153 C.intestinalis:153

Q75B51              	100.00%		F6S7T3              	100.00%
Bootstrap support for Q75B51 as seed ortholog is 100%.
Bootstrap support for F6S7T3 as seed ortholog is 100%.

Group of orthologs #984. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:153 C.intestinalis:153

Q74ZD1              	100.00%		F6WQE3              	100.00%
Bootstrap support for Q74ZD1 as seed ortholog is 100%.
Bootstrap support for F6WQE3 as seed ortholog is 100%.

Group of orthologs #985. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:153 C.intestinalis:153

Q752Z9              	100.00%		F6Y089              	100.00%
Bootstrap support for Q752Z9 as seed ortholog is 100%.
Bootstrap support for F6Y089 as seed ortholog is 100%.

Group of orthologs #986. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:153 C.intestinalis:153

Q754K4              	100.00%		H2XPM9              	100.00%
Bootstrap support for Q754K4 as seed ortholog is 100%.
Bootstrap support for H2XPM9 as seed ortholog is 100%.

Group of orthologs #987. Best score 152 bits
Score difference with first non-orthologous sequence - A.gossypii:152 C.intestinalis:152

Q755A4              	100.00%		F6WTV6              	100.00%
Bootstrap support for Q755A4 as seed ortholog is 100%.
Bootstrap support for F6WTV6 as seed ortholog is 100%.

Group of orthologs #988. Best score 152 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:152

Q753B5              	100.00%		F6YLC1              	100.00%
Bootstrap support for Q753B5 as seed ortholog is 99%.
Bootstrap support for F6YLC1 as seed ortholog is 100%.

Group of orthologs #989. Best score 152 bits
Score difference with first non-orthologous sequence - A.gossypii:152 C.intestinalis:152

Q755K1              	100.00%		F7ASJ4              	100.00%
Bootstrap support for Q755K1 as seed ortholog is 100%.
Bootstrap support for F7ASJ4 as seed ortholog is 100%.

Group of orthologs #990. Best score 152 bits
Score difference with first non-orthologous sequence - A.gossypii:152 C.intestinalis:152

Q75F63              	100.00%		F7AFF3              	100.00%
Bootstrap support for Q75F63 as seed ortholog is 100%.
Bootstrap support for F7AFF3 as seed ortholog is 100%.

Group of orthologs #991. Best score 151 bits
Score difference with first non-orthologous sequence - A.gossypii:151 C.intestinalis:151

Q752F5              	100.00%		F6X8B5              	100.00%
Bootstrap support for Q752F5 as seed ortholog is 100%.
Bootstrap support for F6X8B5 as seed ortholog is 100%.

Group of orthologs #992. Best score 151 bits
Score difference with first non-orthologous sequence - A.gossypii:151 C.intestinalis:151

Q75AW4              	100.00%		F6X2Y1              	100.00%
Bootstrap support for Q75AW4 as seed ortholog is 100%.
Bootstrap support for F6X2Y1 as seed ortholog is 100%.

Group of orthologs #993. Best score 151 bits
Score difference with first non-orthologous sequence - A.gossypii:151 C.intestinalis:151

Q75CG2              	100.00%		F6WH15              	100.00%
Bootstrap support for Q75CG2 as seed ortholog is 100%.
Bootstrap support for F6WH15 as seed ortholog is 100%.

Group of orthologs #994. Best score 151 bits
Score difference with first non-orthologous sequence - A.gossypii:151 C.intestinalis:151

Q75CT1              	100.00%		F7AYB2              	100.00%
Bootstrap support for Q75CT1 as seed ortholog is 100%.
Bootstrap support for F7AYB2 as seed ortholog is 100%.

Group of orthologs #995. Best score 150 bits
Score difference with first non-orthologous sequence - A.gossypii:150 C.intestinalis:150

Q759X9              	100.00%		F6TZK8              	100.00%
Bootstrap support for Q759X9 as seed ortholog is 100%.
Bootstrap support for F6TZK8 as seed ortholog is 100%.

Group of orthologs #996. Best score 150 bits
Score difference with first non-orthologous sequence - A.gossypii:150 C.intestinalis:150

Q759X7              	100.00%		F6YHC8              	100.00%
Bootstrap support for Q759X7 as seed ortholog is 100%.
Bootstrap support for F6YHC8 as seed ortholog is 100%.

Group of orthologs #997. Best score 150 bits
Score difference with first non-orthologous sequence - A.gossypii:150 C.intestinalis:150

Q75DF7              	100.00%		F6YSM6              	100.00%
Bootstrap support for Q75DF7 as seed ortholog is 100%.
Bootstrap support for F6YSM6 as seed ortholog is 100%.

Group of orthologs #998. Best score 149 bits
Score difference with first non-orthologous sequence - A.gossypii:149 C.intestinalis:149

Q757C0              	100.00%		F6U1Z4              	100.00%
Bootstrap support for Q757C0 as seed ortholog is 100%.
Bootstrap support for F6U1Z4 as seed ortholog is 100%.

Group of orthologs #999. Best score 149 bits
Score difference with first non-orthologous sequence - A.gossypii:149 C.intestinalis:149

Q754V3              	100.00%		H2XSK2              	100.00%
Bootstrap support for Q754V3 as seed ortholog is 100%.
Bootstrap support for H2XSK2 as seed ortholog is 100%.

Group of orthologs #1000. Best score 148 bits
Score difference with first non-orthologous sequence - A.gossypii:148 C.intestinalis:148

Q759W4              	100.00%		F6X0N8              	100.00%
                    	       		L7N0S6              	87.50%
Bootstrap support for Q759W4 as seed ortholog is 100%.
Bootstrap support for F6X0N8 as seed ortholog is 100%.

Group of orthologs #1001. Best score 148 bits
Score difference with first non-orthologous sequence - A.gossypii:148 C.intestinalis:62

Q754W2              	100.00%		F6RD78              	100.00%
Bootstrap support for Q754W2 as seed ortholog is 100%.
Bootstrap support for F6RD78 as seed ortholog is 90%.

Group of orthologs #1002. Best score 148 bits
Score difference with first non-orthologous sequence - A.gossypii:148 C.intestinalis:148

Q757U7              	100.00%		F6TPA2              	100.00%
Bootstrap support for Q757U7 as seed ortholog is 100%.
Bootstrap support for F6TPA2 as seed ortholog is 100%.

Group of orthologs #1003. Best score 148 bits
Score difference with first non-orthologous sequence - A.gossypii:148 C.intestinalis:45

Q757L0              	100.00%		F7ATN8              	100.00%
Bootstrap support for Q757L0 as seed ortholog is 100%.
Bootstrap support for F7ATN8 as seed ortholog is 96%.

Group of orthologs #1004. Best score 148 bits
Score difference with first non-orthologous sequence - A.gossypii:148 C.intestinalis:148

Q759B9              	100.00%		F7AG43              	100.00%
Bootstrap support for Q759B9 as seed ortholog is 100%.
Bootstrap support for F7AG43 as seed ortholog is 100%.

Group of orthologs #1005. Best score 147 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:147

Q754I4              	100.00%		F6UGF1              	100.00%
                    	       		F6YC60              	5.24%
Bootstrap support for Q754I4 as seed ortholog is 90%.
Bootstrap support for F6UGF1 as seed ortholog is 100%.

Group of orthologs #1006. Best score 147 bits
Score difference with first non-orthologous sequence - A.gossypii:41 C.intestinalis:14

Q751X9              	100.00%		F6WV80              	100.00%
                    	       		F6UDW5              	5.02%
Bootstrap support for Q751X9 as seed ortholog is 81%.
Bootstrap support for F6WV80 as seed ortholog is 60%.
Alternative seed ortholog is F6R6F3 (14 bits away from this cluster)

Group of orthologs #1007. Best score 147 bits
Score difference with first non-orthologous sequence - A.gossypii:147 C.intestinalis:147

Q75CV0              	100.00%		F6Z235              	100.00%
Bootstrap support for Q75CV0 as seed ortholog is 100%.
Bootstrap support for F6Z235 as seed ortholog is 100%.

Group of orthologs #1008. Best score 147 bits
Score difference with first non-orthologous sequence - A.gossypii:147 C.intestinalis:56

Q75AT0              	100.00%		F7BA12              	100.00%
Bootstrap support for Q75AT0 as seed ortholog is 100%.
Bootstrap support for F7BA12 as seed ortholog is 99%.

Group of orthologs #1009. Best score 147 bits
Score difference with first non-orthologous sequence - A.gossypii:147 C.intestinalis:147

Q75B93              	100.00%		H2XVN4              	100.00%
Bootstrap support for Q75B93 as seed ortholog is 100%.
Bootstrap support for H2XVN4 as seed ortholog is 100%.

Group of orthologs #1010. Best score 147 bits
Score difference with first non-orthologous sequence - A.gossypii:147 C.intestinalis:147

Q75CY9              	100.00%		H2XWQ2              	100.00%
Bootstrap support for Q75CY9 as seed ortholog is 100%.
Bootstrap support for H2XWQ2 as seed ortholog is 100%.

Group of orthologs #1011. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.intestinalis:41

Q74Z63              	100.00%		F6T485              	100.00%
Bootstrap support for Q74Z63 as seed ortholog is 100%.
Bootstrap support for F6T485 as seed ortholog is 96%.

Group of orthologs #1012. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.intestinalis:80

Q754J6              	100.00%		F6XG93              	100.00%
Bootstrap support for Q754J6 as seed ortholog is 100%.
Bootstrap support for F6XG93 as seed ortholog is 90%.

Group of orthologs #1013. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.intestinalis:146

Q75B07              	100.00%		F6VH72              	100.00%
Bootstrap support for Q75B07 as seed ortholog is 100%.
Bootstrap support for F6VH72 as seed ortholog is 100%.

Group of orthologs #1014. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.intestinalis:146

Q75BU7              	100.00%		F6ZBY5              	100.00%
Bootstrap support for Q75BU7 as seed ortholog is 100%.
Bootstrap support for F6ZBY5 as seed ortholog is 100%.

Group of orthologs #1015. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.intestinalis:146

Q75C67              	100.00%		F6ZQ58              	100.00%
Bootstrap support for Q75C67 as seed ortholog is 100%.
Bootstrap support for F6ZQ58 as seed ortholog is 100%.

Group of orthologs #1016. Best score 145 bits
Score difference with first non-orthologous sequence - A.gossypii:145 C.intestinalis:145

Q758M8              	100.00%		F6YMT8              	100.00%
Bootstrap support for Q758M8 as seed ortholog is 100%.
Bootstrap support for F6YMT8 as seed ortholog is 100%.

Group of orthologs #1017. Best score 145 bits
Score difference with first non-orthologous sequence - A.gossypii:145 C.intestinalis:145

Q752J5              	100.00%		F7AMW5              	100.00%
Bootstrap support for Q752J5 as seed ortholog is 100%.
Bootstrap support for F7AMW5 as seed ortholog is 100%.

Group of orthologs #1018. Best score 145 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:5

Q752M3              	100.00%		Q1RL25              	100.00%
Bootstrap support for Q752M3 as seed ortholog is 91%.
Bootstrap support for Q1RL25 as seed ortholog is 53%.
Alternative seed ortholog is F6UBJ3 (5 bits away from this cluster)

Group of orthologs #1019. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.intestinalis:144

Q750M6              	100.00%		F6QL17              	100.00%
Bootstrap support for Q750M6 as seed ortholog is 100%.
Bootstrap support for F6QL17 as seed ortholog is 100%.

Group of orthologs #1020. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.intestinalis:144

Q74ZQ1              	100.00%		F6R901              	100.00%
Bootstrap support for Q74ZQ1 as seed ortholog is 100%.
Bootstrap support for F6R901 as seed ortholog is 100%.

Group of orthologs #1021. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.intestinalis:144

Q752B2              	100.00%		F6VN53              	100.00%
Bootstrap support for Q752B2 as seed ortholog is 100%.
Bootstrap support for F6VN53 as seed ortholog is 100%.

Group of orthologs #1022. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.intestinalis:144

Q75DD3              	100.00%		F7A4L3              	100.00%
Bootstrap support for Q75DD3 as seed ortholog is 100%.
Bootstrap support for F7A4L3 as seed ortholog is 100%.

Group of orthologs #1023. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:25 C.intestinalis:144

Q75CE9              	100.00%		F7AKB5              	100.00%
Bootstrap support for Q75CE9 as seed ortholog is 70%.
Alternative seed ortholog is Q75EV7 (25 bits away from this cluster)
Bootstrap support for F7AKB5 as seed ortholog is 100%.

Group of orthologs #1024. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.intestinalis:144

Q750Q2              	100.00%		H2XR58              	100.00%
Bootstrap support for Q750Q2 as seed ortholog is 100%.
Bootstrap support for H2XR58 as seed ortholog is 100%.

Group of orthologs #1025. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.intestinalis:144

Q758N6              	100.00%		H2XVM3              	100.00%
Bootstrap support for Q758N6 as seed ortholog is 100%.
Bootstrap support for H2XVM3 as seed ortholog is 100%.

Group of orthologs #1026. Best score 143 bits
Score difference with first non-orthologous sequence - A.gossypii:143 C.intestinalis:143

Q751R6              	100.00%		F6QZY3              	100.00%
Bootstrap support for Q751R6 as seed ortholog is 100%.
Bootstrap support for F6QZY3 as seed ortholog is 100%.

Group of orthologs #1027. Best score 143 bits
Score difference with first non-orthologous sequence - A.gossypii:88 C.intestinalis:86

Q756D0              	100.00%		F6RBK2              	100.00%
Bootstrap support for Q756D0 as seed ortholog is 97%.
Bootstrap support for F6RBK2 as seed ortholog is 96%.

Group of orthologs #1028. Best score 143 bits
Score difference with first non-orthologous sequence - A.gossypii:143 C.intestinalis:143

Q75C72              	100.00%		F6RBT7              	100.00%
Bootstrap support for Q75C72 as seed ortholog is 100%.
Bootstrap support for F6RBT7 as seed ortholog is 100%.

Group of orthologs #1029. Best score 143 bits
Score difference with first non-orthologous sequence - A.gossypii:143 C.intestinalis:143

Q758G3              	100.00%		F7B946              	100.00%
Bootstrap support for Q758G3 as seed ortholog is 100%.
Bootstrap support for F7B946 as seed ortholog is 100%.

Group of orthologs #1030. Best score 143 bits
Score difference with first non-orthologous sequence - A.gossypii:143 C.intestinalis:143

Q75F78              	100.00%		H2XL93              	100.00%
Bootstrap support for Q75F78 as seed ortholog is 100%.
Bootstrap support for H2XL93 as seed ortholog is 100%.

Group of orthologs #1031. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.intestinalis:142

Q753W6              	100.00%		H2XR44              	100.00%
                    	       		F6UDM9              	12.14%
Bootstrap support for Q753W6 as seed ortholog is 100%.
Bootstrap support for H2XR44 as seed ortholog is 100%.

Group of orthologs #1032. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.intestinalis:142

Q755P0              	100.00%		F6PHR7              	100.00%
Bootstrap support for Q755P0 as seed ortholog is 100%.
Bootstrap support for F6PHR7 as seed ortholog is 100%.

Group of orthologs #1033. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.intestinalis:73

Q75E82              	100.00%		F6R683              	100.00%
Bootstrap support for Q75E82 as seed ortholog is 100%.
Bootstrap support for F6R683 as seed ortholog is 99%.

Group of orthologs #1034. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.intestinalis:65

Q75C81              	100.00%		F6TKH9              	100.00%
Bootstrap support for Q75C81 as seed ortholog is 99%.
Bootstrap support for F6TKH9 as seed ortholog is 99%.

Group of orthologs #1035. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.intestinalis:142

Q753P3              	100.00%		F7B5A5              	100.00%
Bootstrap support for Q753P3 as seed ortholog is 100%.
Bootstrap support for F7B5A5 as seed ortholog is 100%.

Group of orthologs #1036. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.intestinalis:142

Q757E5              	100.00%		H2XYU1              	100.00%
Bootstrap support for Q757E5 as seed ortholog is 100%.
Bootstrap support for H2XYU1 as seed ortholog is 100%.

Group of orthologs #1037. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:141 C.intestinalis:141

Q75DM0              	100.00%		F6YP78              	100.00%
Q75CJ2              	100.00%		F7A9X4              	100.00%
                    	       		F6WN12              	73.04%
                    	       		F6ZSG1              	69.90%
                    	       		F6ZS22              	61.92%
                    	       		F6XMJ7              	38.09%
                    	       		F6VYA1              	34.22%
                    	       		F6WDV1              	33.66%
                    	       		F6YYX0              	32.77%
                    	       		F6TBT3              	30.22%
                    	       		F7B629              	27.52%
                    	       		F7AGY9              	26.72%
                    	       		H2Y1T7              	26.36%
                    	       		F6YJ55              	24.91%
                    	       		F6WY28              	24.30%
                    	       		F6WSG2              	23.46%
                    	       		F6YJ69              	22.97%
                    	       		F6YJM6              	21.01%
                    	       		F6W4G0              	16.34%
Bootstrap support for Q75DM0 as seed ortholog is 100%.
Bootstrap support for Q75CJ2 as seed ortholog is 100%.
Bootstrap support for F6YP78 as seed ortholog is 100%.
Bootstrap support for F7A9X4 as seed ortholog is 100%.

Group of orthologs #1038. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:141 C.intestinalis:141

Q753E7              	100.00%		F6SK91              	100.00%
Bootstrap support for Q753E7 as seed ortholog is 100%.
Bootstrap support for F6SK91 as seed ortholog is 100%.

Group of orthologs #1039. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:141 C.intestinalis:141

Q751S0              	100.00%		F6U019              	100.00%
Bootstrap support for Q751S0 as seed ortholog is 100%.
Bootstrap support for F6U019 as seed ortholog is 100%.

Group of orthologs #1040. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:141 C.intestinalis:141

Q75A89              	100.00%		F6YWB6              	100.00%
Bootstrap support for Q75A89 as seed ortholog is 100%.
Bootstrap support for F6YWB6 as seed ortholog is 100%.

Group of orthologs #1041. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:141 C.intestinalis:141

Q75B73              	100.00%		F6ZSB0              	100.00%
Bootstrap support for Q75B73 as seed ortholog is 100%.
Bootstrap support for F6ZSB0 as seed ortholog is 100%.

Group of orthologs #1042. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:141 C.intestinalis:141

Q756E2              	100.00%		H2Y0D5              	100.00%
Bootstrap support for Q756E2 as seed ortholog is 100%.
Bootstrap support for H2Y0D5 as seed ortholog is 100%.

Group of orthologs #1043. Best score 140 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:33

Q74ZS6              	100.00%		F6QMU4              	100.00%
                    	       		F6R2J6              	8.92%
Bootstrap support for Q74ZS6 as seed ortholog is 82%.
Bootstrap support for F6QMU4 as seed ortholog is 99%.

Group of orthologs #1044. Best score 140 bits
Score difference with first non-orthologous sequence - A.gossypii:140 C.intestinalis:140

Q74ZX9              	100.00%		F6T385              	100.00%
Bootstrap support for Q74ZX9 as seed ortholog is 100%.
Bootstrap support for F6T385 as seed ortholog is 100%.

Group of orthologs #1045. Best score 140 bits
Score difference with first non-orthologous sequence - A.gossypii:140 C.intestinalis:140

Q757D7              	100.00%		F6W7Q3              	100.00%
Bootstrap support for Q757D7 as seed ortholog is 100%.
Bootstrap support for F6W7Q3 as seed ortholog is 100%.

Group of orthologs #1046. Best score 140 bits
Score difference with first non-orthologous sequence - A.gossypii:140 C.intestinalis:140

Q74ZF6              	100.00%		F7BBN1              	100.00%
Bootstrap support for Q74ZF6 as seed ortholog is 100%.
Bootstrap support for F7BBN1 as seed ortholog is 100%.

Group of orthologs #1047. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:139 C.intestinalis:139

Q754M4              	100.00%		F7ADG5              	100.00%
                    	       		F6Y9G9              	92.77%
Bootstrap support for Q754M4 as seed ortholog is 100%.
Bootstrap support for F7ADG5 as seed ortholog is 100%.

Group of orthologs #1048. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:139 C.intestinalis:139

Q752J1              	100.00%		F6T6F5              	100.00%
Bootstrap support for Q752J1 as seed ortholog is 100%.
Bootstrap support for F6T6F5 as seed ortholog is 100%.

Group of orthologs #1049. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:139 C.intestinalis:139

Q753Z5              	100.00%		F6Y7V1              	100.00%
Bootstrap support for Q753Z5 as seed ortholog is 100%.
Bootstrap support for F6Y7V1 as seed ortholog is 100%.

Group of orthologs #1050. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:139 C.intestinalis:139

Q754U7              	100.00%		F6YXT8              	100.00%
Bootstrap support for Q754U7 as seed ortholog is 100%.
Bootstrap support for F6YXT8 as seed ortholog is 100%.

Group of orthologs #1051. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:41 C.intestinalis:74

Q759U7              	100.00%		H2XLI2              	100.00%
Bootstrap support for Q759U7 as seed ortholog is 84%.
Bootstrap support for H2XLI2 as seed ortholog is 94%.

Group of orthologs #1052. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:139 C.intestinalis:139

Q752U6              	100.00%		H2XSQ8              	100.00%
Bootstrap support for Q752U6 as seed ortholog is 100%.
Bootstrap support for H2XSQ8 as seed ortholog is 100%.

Group of orthologs #1053. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.intestinalis:138

Q754P8              	100.00%		H2Y0X5              	100.00%
                    	       		F6W2L5              	9.73%
Bootstrap support for Q754P8 as seed ortholog is 100%.
Bootstrap support for H2Y0X5 as seed ortholog is 100%.

Group of orthologs #1054. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.intestinalis:138

Q756R3              	100.00%		F6T8R8              	100.00%
Bootstrap support for Q756R3 as seed ortholog is 100%.
Bootstrap support for F6T8R8 as seed ortholog is 100%.

Group of orthologs #1055. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.intestinalis:138

Q75D11              	100.00%		F6SW03              	100.00%
Bootstrap support for Q75D11 as seed ortholog is 98%.
Bootstrap support for F6SW03 as seed ortholog is 100%.

Group of orthologs #1056. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.intestinalis:138

Q75EI1              	100.00%		F6ZGV0              	100.00%
Bootstrap support for Q75EI1 as seed ortholog is 100%.
Bootstrap support for F6ZGV0 as seed ortholog is 100%.

Group of orthologs #1057. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.intestinalis:72

Q754Q8              	100.00%		Q4H329              	100.00%
Bootstrap support for Q754Q8 as seed ortholog is 100%.
Bootstrap support for Q4H329 as seed ortholog is 99%.

Group of orthologs #1058. Best score 137 bits
Score difference with first non-orthologous sequence - A.gossypii:137 C.intestinalis:137

Q754Z5              	100.00%		F6QWU8              	100.00%
Bootstrap support for Q754Z5 as seed ortholog is 100%.
Bootstrap support for F6QWU8 as seed ortholog is 100%.

Group of orthologs #1059. Best score 137 bits
Score difference with first non-orthologous sequence - A.gossypii:137 C.intestinalis:137

Q754J9              	100.00%		F6U095              	100.00%
Bootstrap support for Q754J9 as seed ortholog is 100%.
Bootstrap support for F6U095 as seed ortholog is 100%.

Group of orthologs #1060. Best score 137 bits
Score difference with first non-orthologous sequence - A.gossypii:137 C.intestinalis:137

Q75CK4              	100.00%		F6S0S0              	100.00%
Bootstrap support for Q75CK4 as seed ortholog is 100%.
Bootstrap support for F6S0S0 as seed ortholog is 100%.

Group of orthologs #1061. Best score 137 bits
Score difference with first non-orthologous sequence - A.gossypii:137 C.intestinalis:137

Q75DR6              	100.00%		F6X3L7              	100.00%
Bootstrap support for Q75DR6 as seed ortholog is 100%.
Bootstrap support for F6X3L7 as seed ortholog is 100%.

Group of orthologs #1062. Best score 137 bits
Score difference with first non-orthologous sequence - A.gossypii:137 C.intestinalis:137

Q758W5              	100.00%		H2XMQ8              	100.00%
Bootstrap support for Q758W5 as seed ortholog is 100%.
Bootstrap support for H2XMQ8 as seed ortholog is 100%.

Group of orthologs #1063. Best score 137 bits
Score difference with first non-orthologous sequence - A.gossypii:137 C.intestinalis:137

Q751A5              	100.00%		H2XZV1              	100.00%
Bootstrap support for Q751A5 as seed ortholog is 100%.
Bootstrap support for H2XZV1 as seed ortholog is 100%.

Group of orthologs #1064. Best score 137 bits
Score difference with first non-orthologous sequence - A.gossypii:137 C.intestinalis:137

Q758N4              	100.00%		H2XVJ2              	100.00%
Bootstrap support for Q758N4 as seed ortholog is 100%.
Bootstrap support for H2XVJ2 as seed ortholog is 100%.

Group of orthologs #1065. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:60 C.intestinalis:136

Q756H4              	100.00%		F6YPB8              	100.00%
                    	       		F6SNY7              	27.37%
                    	       		F6WT59              	24.49%
                    	       		F6YLY7              	17.70%
                    	       		F6SD56              	16.36%
                    	       		F6SNZ5              	10.39%
                    	       		F7AEB8              	5.66%
Bootstrap support for Q756H4 as seed ortholog is 84%.
Bootstrap support for F6YPB8 as seed ortholog is 100%.

Group of orthologs #1066. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:136 C.intestinalis:136

Q754I5              	100.00%		F6UNT7              	100.00%
Q753T1              	11.88%		
Bootstrap support for Q754I5 as seed ortholog is 100%.
Bootstrap support for F6UNT7 as seed ortholog is 100%.

Group of orthologs #1067. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.intestinalis:66

Q755Y7              	100.00%		F6ZUD7              	100.00%
Q75C65              	16.37%		
Bootstrap support for Q755Y7 as seed ortholog is 98%.
Bootstrap support for F6ZUD7 as seed ortholog is 93%.

Group of orthologs #1068. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:136 C.intestinalis:136

Q75DN1              	100.00%		F6SS76              	100.00%
Bootstrap support for Q75DN1 as seed ortholog is 100%.
Bootstrap support for F6SS76 as seed ortholog is 100%.

Group of orthologs #1069. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:136 C.intestinalis:136

Q75AV6              	100.00%		F6WK69              	100.00%
Bootstrap support for Q75AV6 as seed ortholog is 100%.
Bootstrap support for F6WK69 as seed ortholog is 100%.

Group of orthologs #1070. Best score 135 bits
Score difference with first non-orthologous sequence - A.gossypii:135 C.intestinalis:135

Q750E4              	100.00%		F6XTV8              	100.00%
Bootstrap support for Q750E4 as seed ortholog is 100%.
Bootstrap support for F6XTV8 as seed ortholog is 100%.

Group of orthologs #1071. Best score 135 bits
Score difference with first non-orthologous sequence - A.gossypii:135 C.intestinalis:135

Q75BQ4              	100.00%		F6XG50              	100.00%
Bootstrap support for Q75BQ4 as seed ortholog is 100%.
Bootstrap support for F6XG50 as seed ortholog is 100%.

Group of orthologs #1072. Best score 135 bits
Score difference with first non-orthologous sequence - A.gossypii:135 C.intestinalis:38

Q75AV8              	100.00%		F7B4V3              	100.00%
Bootstrap support for Q75AV8 as seed ortholog is 100%.
Bootstrap support for F7B4V3 as seed ortholog is 91%.

Group of orthologs #1073. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 C.intestinalis:66

Q74ZA6              	100.00%		F7AK04              	100.00%
                    	       		F6RQ16              	23.93%
Bootstrap support for Q74ZA6 as seed ortholog is 100%.
Bootstrap support for F7AK04 as seed ortholog is 98%.

Group of orthologs #1074. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 C.intestinalis:134

Q751I7              	100.00%		F6SU13              	100.00%
Bootstrap support for Q751I7 as seed ortholog is 100%.
Bootstrap support for F6SU13 as seed ortholog is 100%.

Group of orthologs #1075. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 C.intestinalis:42

Q75C56              	100.00%		F6THX7              	100.00%
Bootstrap support for Q75C56 as seed ortholog is 100%.
Bootstrap support for F6THX7 as seed ortholog is 56%.
Alternative seed ortholog is H2Y2F3 (42 bits away from this cluster)

Group of orthologs #1076. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 C.intestinalis:134

Q753W3              	100.00%		F6ZYA6              	100.00%
Bootstrap support for Q753W3 as seed ortholog is 100%.
Bootstrap support for F6ZYA6 as seed ortholog is 100%.

Group of orthologs #1077. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.intestinalis:134

Q75A80              	100.00%		F7AZA1              	100.00%
Bootstrap support for Q75A80 as seed ortholog is 99%.
Bootstrap support for F7AZA1 as seed ortholog is 100%.

Group of orthologs #1078. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 C.intestinalis:134

Q75BC2              	100.00%		Q1RLA5              	100.00%
Bootstrap support for Q75BC2 as seed ortholog is 100%.
Bootstrap support for Q1RLA5 as seed ortholog is 100%.

Group of orthologs #1079. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.intestinalis:133

Q751I5              	100.00%		F6R2P7              	100.00%
Bootstrap support for Q751I5 as seed ortholog is 100%.
Bootstrap support for F6R2P7 as seed ortholog is 100%.

Group of orthologs #1080. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.intestinalis:133

Q75DI4              	100.00%		F6R0P0              	100.00%
Bootstrap support for Q75DI4 as seed ortholog is 100%.
Bootstrap support for F6R0P0 as seed ortholog is 100%.

Group of orthologs #1081. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.intestinalis:133

Q758H1              	100.00%		F6V4L6              	100.00%
Bootstrap support for Q758H1 as seed ortholog is 100%.
Bootstrap support for F6V4L6 as seed ortholog is 100%.

Group of orthologs #1082. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.intestinalis:133

Q75DE2              	100.00%		F6TJS2              	100.00%
Bootstrap support for Q75DE2 as seed ortholog is 100%.
Bootstrap support for F6TJS2 as seed ortholog is 100%.

Group of orthologs #1083. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.intestinalis:133

Q75A02              	100.00%		F7AD97              	100.00%
Bootstrap support for Q75A02 as seed ortholog is 100%.
Bootstrap support for F7AD97 as seed ortholog is 100%.

Group of orthologs #1084. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.intestinalis:133

Q74Z62              	100.00%		H2Y2E8              	100.00%
Bootstrap support for Q74Z62 as seed ortholog is 100%.
Bootstrap support for H2Y2E8 as seed ortholog is 100%.

Group of orthologs #1085. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.intestinalis:133

Q75D20              	100.00%		Q1RL40              	100.00%
Bootstrap support for Q75D20 as seed ortholog is 100%.
Bootstrap support for Q1RL40 as seed ortholog is 100%.

Group of orthologs #1086. Best score 132 bits
Score difference with first non-orthologous sequence - A.gossypii:132 C.intestinalis:132

Q755J9              	100.00%		F6PQW9              	100.00%
Bootstrap support for Q755J9 as seed ortholog is 100%.
Bootstrap support for F6PQW9 as seed ortholog is 100%.

Group of orthologs #1087. Best score 132 bits
Score difference with first non-orthologous sequence - A.gossypii:132 C.intestinalis:67

Q752M2              	100.00%		F7B496              	100.00%
Bootstrap support for Q752M2 as seed ortholog is 100%.
Bootstrap support for F7B496 as seed ortholog is 99%.

Group of orthologs #1088. Best score 132 bits
Score difference with first non-orthologous sequence - A.gossypii:132 C.intestinalis:132

Q757B6              	100.00%		H2XUK5              	100.00%
Bootstrap support for Q757B6 as seed ortholog is 100%.
Bootstrap support for H2XUK5 as seed ortholog is 100%.

Group of orthologs #1089. Best score 131 bits
Score difference with first non-orthologous sequence - A.gossypii:131 C.intestinalis:131

Q75AS8              	100.00%		F6Q484              	100.00%
Bootstrap support for Q75AS8 as seed ortholog is 100%.
Bootstrap support for F6Q484 as seed ortholog is 100%.

Group of orthologs #1090. Best score 131 bits
Score difference with first non-orthologous sequence - A.gossypii:131 C.intestinalis:131

Q759P8              	100.00%		F7BDE0              	100.00%
Bootstrap support for Q759P8 as seed ortholog is 100%.
Bootstrap support for F7BDE0 as seed ortholog is 100%.

Group of orthologs #1091. Best score 131 bits
Score difference with first non-orthologous sequence - A.gossypii:131 C.intestinalis:26

Q754Y9              	100.00%		H2Y1N7              	100.00%
Bootstrap support for Q754Y9 as seed ortholog is 100%.
Bootstrap support for H2Y1N7 as seed ortholog is 83%.

Group of orthologs #1092. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.intestinalis:130

Q752P8              	100.00%		F6PK54              	100.00%
Bootstrap support for Q752P8 as seed ortholog is 100%.
Bootstrap support for F6PK54 as seed ortholog is 100%.

Group of orthologs #1093. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.intestinalis:130

Q74ZP6              	100.00%		F6WNH2              	100.00%
Bootstrap support for Q74ZP6 as seed ortholog is 100%.
Bootstrap support for F6WNH2 as seed ortholog is 100%.

Group of orthologs #1094. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.intestinalis:130

Q753A0              	100.00%		F6YZ22              	100.00%
Bootstrap support for Q753A0 as seed ortholog is 100%.
Bootstrap support for F6YZ22 as seed ortholog is 100%.

Group of orthologs #1095. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.intestinalis:130

Q75DA1              	100.00%		F6VPU4              	100.00%
Bootstrap support for Q75DA1 as seed ortholog is 100%.
Bootstrap support for F6VPU4 as seed ortholog is 100%.

Group of orthologs #1096. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:49

Q75F71              	100.00%		H2XME3              	100.00%
Bootstrap support for Q75F71 as seed ortholog is 98%.
Bootstrap support for H2XME3 as seed ortholog is 98%.

Group of orthologs #1097. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 C.intestinalis:129

Q75A75              	100.00%		F6PIG9              	100.00%
Bootstrap support for Q75A75 as seed ortholog is 100%.
Bootstrap support for F6PIG9 as seed ortholog is 100%.

Group of orthologs #1098. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 C.intestinalis:129

Q755A1              	100.00%		F6T2R5              	100.00%
Bootstrap support for Q755A1 as seed ortholog is 100%.
Bootstrap support for F6T2R5 as seed ortholog is 100%.

Group of orthologs #1099. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 C.intestinalis:49

Q755X2              	100.00%		F6UTG5              	100.00%
Bootstrap support for Q755X2 as seed ortholog is 100%.
Bootstrap support for F6UTG5 as seed ortholog is 99%.

Group of orthologs #1100. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 C.intestinalis:129

Q75EP2              	100.00%		F6V437              	100.00%
Bootstrap support for Q75EP2 as seed ortholog is 100%.
Bootstrap support for F6V437 as seed ortholog is 100%.

Group of orthologs #1101. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 C.intestinalis:129

Q753X8              	100.00%		F7APY2              	100.00%
Bootstrap support for Q753X8 as seed ortholog is 100%.
Bootstrap support for F7APY2 as seed ortholog is 100%.

Group of orthologs #1102. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 C.intestinalis:129

Q75BM3              	100.00%		F6ZMJ7              	100.00%
Bootstrap support for Q75BM3 as seed ortholog is 100%.
Bootstrap support for F6ZMJ7 as seed ortholog is 100%.

Group of orthologs #1103. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:2 C.intestinalis:128

Q759W8              	100.00%		F6S1K1              	100.00%
Bootstrap support for Q759W8 as seed ortholog is 51%.
Alternative seed ortholog is Q758Z5 (2 bits away from this cluster)
Bootstrap support for F6S1K1 as seed ortholog is 100%.

Group of orthologs #1104. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:128

Q75AP0              	100.00%		F6S578              	100.00%
Bootstrap support for Q75AP0 as seed ortholog is 100%.
Bootstrap support for F6S578 as seed ortholog is 100%.

Group of orthologs #1105. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:128

Q74Z68              	100.00%		F6WIL6              	100.00%
Bootstrap support for Q74Z68 as seed ortholog is 100%.
Bootstrap support for F6WIL6 as seed ortholog is 100%.

Group of orthologs #1106. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:128

Q759H9              	100.00%		F6TBE2              	100.00%
Bootstrap support for Q759H9 as seed ortholog is 100%.
Bootstrap support for F6TBE2 as seed ortholog is 100%.

Group of orthologs #1107. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:128

Q74Z43              	100.00%		F6WRK0              	100.00%
Bootstrap support for Q74Z43 as seed ortholog is 100%.
Bootstrap support for F6WRK0 as seed ortholog is 100%.

Group of orthologs #1108. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:128

Q75BU9              	100.00%		F6SEU1              	100.00%
Bootstrap support for Q75BU9 as seed ortholog is 100%.
Bootstrap support for F6SEU1 as seed ortholog is 100%.

Group of orthologs #1109. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:128

Q752P7              	100.00%		F6X073              	100.00%
Bootstrap support for Q752P7 as seed ortholog is 100%.
Bootstrap support for F6X073 as seed ortholog is 100%.

Group of orthologs #1110. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:128

Q750E5              	100.00%		F6Z541              	100.00%
Bootstrap support for Q750E5 as seed ortholog is 100%.
Bootstrap support for F6Z541 as seed ortholog is 100%.

Group of orthologs #1111. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:128

Q750F6              	100.00%		F6ZGT8              	100.00%
Bootstrap support for Q750F6 as seed ortholog is 100%.
Bootstrap support for F6ZGT8 as seed ortholog is 100%.

Group of orthologs #1112. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:128

Q752U5              	100.00%		F6Z897              	100.00%
Bootstrap support for Q752U5 as seed ortholog is 100%.
Bootstrap support for F6Z897 as seed ortholog is 100%.

Group of orthologs #1113. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:128

Q75EM4              	100.00%		F6YSG2              	100.00%
Bootstrap support for Q75EM4 as seed ortholog is 100%.
Bootstrap support for F6YSG2 as seed ortholog is 100%.

Group of orthologs #1114. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.intestinalis:128

Q75B87              	100.00%		H2XRU0              	100.00%
Bootstrap support for Q75B87 as seed ortholog is 100%.
Bootstrap support for H2XRU0 as seed ortholog is 100%.

Group of orthologs #1115. Best score 127 bits
Score difference with first non-orthologous sequence - A.gossypii:127 C.intestinalis:127

Q755R1              	100.00%		F6V7G7              	100.00%
D8FGF0              	100.00%		
Bootstrap support for Q755R1 as seed ortholog is 100%.
Bootstrap support for D8FGF0 as seed ortholog is 100%.
Bootstrap support for F6V7G7 as seed ortholog is 100%.

Group of orthologs #1116. Best score 127 bits
Score difference with first non-orthologous sequence - A.gossypii:127 C.intestinalis:127

Q750C7              	100.00%		F6R4H7              	100.00%
Bootstrap support for Q750C7 as seed ortholog is 100%.
Bootstrap support for F6R4H7 as seed ortholog is 100%.

Group of orthologs #1117. Best score 127 bits
Score difference with first non-orthologous sequence - A.gossypii:127 C.intestinalis:43

Q75D93              	100.00%		F6R6J0              	100.00%
Bootstrap support for Q75D93 as seed ortholog is 100%.
Bootstrap support for F6R6J0 as seed ortholog is 83%.

Group of orthologs #1118. Best score 127 bits
Score difference with first non-orthologous sequence - A.gossypii:127 C.intestinalis:127

Q75E94              	100.00%		F6RT01              	100.00%
Bootstrap support for Q75E94 as seed ortholog is 100%.
Bootstrap support for F6RT01 as seed ortholog is 100%.

Group of orthologs #1119. Best score 127 bits
Score difference with first non-orthologous sequence - A.gossypii:127 C.intestinalis:127

Q75DS6              	100.00%		F6XJ18              	100.00%
Bootstrap support for Q75DS6 as seed ortholog is 100%.
Bootstrap support for F6XJ18 as seed ortholog is 100%.

Group of orthologs #1120. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 C.intestinalis:126

Q751G6              	100.00%		H2XPZ6              	100.00%
                    	       		F6VTU7              	41.81%
                    	       		F6U0P5              	33.66%
                    	       		F6W9Y0              	28.75%
                    	       		F6W9J4              	12.37%
Bootstrap support for Q751G6 as seed ortholog is 100%.
Bootstrap support for H2XPZ6 as seed ortholog is 100%.

Group of orthologs #1121. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 C.intestinalis:126

Q754C5              	100.00%		F6RRL3              	100.00%
Bootstrap support for Q754C5 as seed ortholog is 100%.
Bootstrap support for F6RRL3 as seed ortholog is 100%.

Group of orthologs #1122. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.intestinalis:9

Q75DW3              	100.00%		F7A515              	100.00%
Bootstrap support for Q75DW3 as seed ortholog is 99%.
Bootstrap support for F7A515 as seed ortholog is 61%.
Alternative seed ortholog is F6Z1B8 (9 bits away from this cluster)

Group of orthologs #1123. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 C.intestinalis:126

Q758T0              	100.00%		H2XLC7              	100.00%
Bootstrap support for Q758T0 as seed ortholog is 100%.
Bootstrap support for H2XLC7 as seed ortholog is 100%.

Group of orthologs #1124. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 C.intestinalis:126

Q74ZC2              	100.00%		H2XW02              	100.00%
Bootstrap support for Q74ZC2 as seed ortholog is 100%.
Bootstrap support for H2XW02 as seed ortholog is 100%.

Group of orthologs #1125. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 C.intestinalis:126

Q74ZQ7              	100.00%		H2XZC9              	100.00%
Bootstrap support for Q74ZQ7 as seed ortholog is 100%.
Bootstrap support for H2XZC9 as seed ortholog is 100%.

Group of orthologs #1126. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 C.intestinalis:23

Q757Q7              	100.00%		H2XUW4              	100.00%
Bootstrap support for Q757Q7 as seed ortholog is 100%.
Bootstrap support for H2XUW4 as seed ortholog is 80%.

Group of orthologs #1127. Best score 125 bits
Score difference with first non-orthologous sequence - A.gossypii:125 C.intestinalis:7

Q752A0              	100.00%		F7A7A0              	100.00%
                    	       		F6S8Y1              	12.50%
Bootstrap support for Q752A0 as seed ortholog is 100%.
Bootstrap support for F7A7A0 as seed ortholog is 53%.
Alternative seed ortholog is F6V934 (7 bits away from this cluster)

Group of orthologs #1128. Best score 125 bits
Score difference with first non-orthologous sequence - A.gossypii:125 C.intestinalis:125

Q753N4              	100.00%		F6SDU1              	100.00%
Bootstrap support for Q753N4 as seed ortholog is 100%.
Bootstrap support for F6SDU1 as seed ortholog is 100%.

Group of orthologs #1129. Best score 125 bits
Score difference with first non-orthologous sequence - A.gossypii:125 C.intestinalis:125

Q75CH3              	100.00%		F7A9X0              	100.00%
Bootstrap support for Q75CH3 as seed ortholog is 100%.
Bootstrap support for F7A9X0 as seed ortholog is 100%.

Group of orthologs #1130. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.intestinalis:124

Q75D55              	100.00%		F6W1X7              	100.00%
                    	       		F6Z9B3              	19.26%
Bootstrap support for Q75D55 as seed ortholog is 100%.
Bootstrap support for F6W1X7 as seed ortholog is 100%.

Group of orthologs #1131. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:48 C.intestinalis:11

Q752L3              	100.00%		F6U472              	100.00%
Bootstrap support for Q752L3 as seed ortholog is 94%.
Bootstrap support for F6U472 as seed ortholog is 63%.
Alternative seed ortholog is F6PTW3 (11 bits away from this cluster)

Group of orthologs #1132. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.intestinalis:124

Q75A84              	100.00%		F6T2S3              	100.00%
Bootstrap support for Q75A84 as seed ortholog is 100%.
Bootstrap support for F6T2S3 as seed ortholog is 100%.

Group of orthologs #1133. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.intestinalis:124

Q755G8              	100.00%		F6WWT1              	100.00%
Bootstrap support for Q755G8 as seed ortholog is 100%.
Bootstrap support for F6WWT1 as seed ortholog is 100%.

Group of orthologs #1134. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.intestinalis:124

Q756R5              	100.00%		F6XS17              	100.00%
Bootstrap support for Q756R5 as seed ortholog is 100%.
Bootstrap support for F6XS17 as seed ortholog is 100%.

Group of orthologs #1135. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.intestinalis:124

Q75A09              	100.00%		F7B383              	100.00%
Bootstrap support for Q75A09 as seed ortholog is 100%.
Bootstrap support for F7B383 as seed ortholog is 100%.

Group of orthologs #1136. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.intestinalis:76

Q75E42              	100.00%		H2XQT4              	100.00%
                    	       		F7AM82              	23.84%
                    	       		F6QL68              	12.20%
                    	       		F6XIK7              	9.98%
                    	       		H2XL49              	7.39%
                    	       		F6W4M3              	7.21%
                    	       		F7AGL2              	7.02%
                    	       		F6TGU6              	5.18%
Bootstrap support for Q75E42 as seed ortholog is 100%.
Bootstrap support for H2XQT4 as seed ortholog is 97%.

Group of orthologs #1137. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:21 C.intestinalis:50

Q75DP0              	100.00%		F6X3X4              	100.00%
                    	       		H2XS14              	11.98%
                    	       		F7A8Z2              	5.37%
Bootstrap support for Q75DP0 as seed ortholog is 56%.
Alternative seed ortholog is Q751L2 (21 bits away from this cluster)
Bootstrap support for F6X3X4 as seed ortholog is 93%.

Group of orthologs #1138. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.intestinalis:123

Q75BL0              	100.00%		F6ULQ2              	100.00%
                    	       		H2Y0B3              	8.50%
Bootstrap support for Q75BL0 as seed ortholog is 100%.
Bootstrap support for F6ULQ2 as seed ortholog is 100%.

Group of orthologs #1139. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.intestinalis:123

Q750F5              	100.00%		F6RPW8              	100.00%
Bootstrap support for Q750F5 as seed ortholog is 100%.
Bootstrap support for F6RPW8 as seed ortholog is 100%.

Group of orthologs #1140. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.intestinalis:123

Q75BU0              	100.00%		F6QR08              	100.00%
Bootstrap support for Q75BU0 as seed ortholog is 100%.
Bootstrap support for F6QR08 as seed ortholog is 100%.

Group of orthologs #1141. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.intestinalis:123

Q75E57              	100.00%		F6Q7D4              	100.00%
Bootstrap support for Q75E57 as seed ortholog is 100%.
Bootstrap support for F6Q7D4 as seed ortholog is 100%.

Group of orthologs #1142. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.intestinalis:123

Q75A25              	100.00%		F6VFA0              	100.00%
Bootstrap support for Q75A25 as seed ortholog is 100%.
Bootstrap support for F6VFA0 as seed ortholog is 100%.

Group of orthologs #1143. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.intestinalis:123

Q75DS4              	100.00%		F6W9C9              	100.00%
Bootstrap support for Q75DS4 as seed ortholog is 100%.
Bootstrap support for F6W9C9 as seed ortholog is 100%.

Group of orthologs #1144. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.intestinalis:123

Q753Y8              	100.00%		H2XPV5              	100.00%
Bootstrap support for Q753Y8 as seed ortholog is 100%.
Bootstrap support for H2XPV5 as seed ortholog is 100%.

Group of orthologs #1145. Best score 122 bits
Score difference with first non-orthologous sequence - A.gossypii:122 C.intestinalis:122

Q752Z2              	100.00%		F6VQB3              	100.00%
                    	       		H2XML0              	50.71%
Bootstrap support for Q752Z2 as seed ortholog is 100%.
Bootstrap support for F6VQB3 as seed ortholog is 100%.

Group of orthologs #1146. Best score 122 bits
Score difference with first non-orthologous sequence - A.gossypii:122 C.intestinalis:122

Q75BX4              	100.00%		F6PXD8              	100.00%
Bootstrap support for Q75BX4 as seed ortholog is 100%.
Bootstrap support for F6PXD8 as seed ortholog is 100%.

Group of orthologs #1147. Best score 122 bits
Score difference with first non-orthologous sequence - A.gossypii:122 C.intestinalis:122

Q752G7              	100.00%		F6VMC6              	100.00%
Bootstrap support for Q752G7 as seed ortholog is 100%.
Bootstrap support for F6VMC6 as seed ortholog is 100%.

Group of orthologs #1148. Best score 122 bits
Score difference with first non-orthologous sequence - A.gossypii:122 C.intestinalis:122

Q75AA0              	100.00%		F7BA39              	100.00%
Bootstrap support for Q75AA0 as seed ortholog is 100%.
Bootstrap support for F7BA39 as seed ortholog is 100%.

Group of orthologs #1149. Best score 122 bits
Score difference with first non-orthologous sequence - A.gossypii:122 C.intestinalis:122

Q759B3              	100.00%		H2XLC6              	100.00%
Bootstrap support for Q759B3 as seed ortholog is 100%.
Bootstrap support for H2XLC6 as seed ortholog is 100%.

Group of orthologs #1150. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 C.intestinalis:121

Q751Q4              	100.00%		F6VJT7              	100.00%
Q753U7              	53.55%		F7BLJ0              	38.53%
                    	       		F6SF16              	23.57%
                    	       		H2XUM3              	9.71%
Bootstrap support for Q751Q4 as seed ortholog is 100%.
Bootstrap support for F6VJT7 as seed ortholog is 100%.

Group of orthologs #1151. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 C.intestinalis:121

Q75CT5              	100.00%		A7BK23              	100.00%
Bootstrap support for Q75CT5 as seed ortholog is 100%.
Bootstrap support for A7BK23 as seed ortholog is 100%.

Group of orthologs #1152. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 C.intestinalis:121

Q758W6              	100.00%		F6SAX8              	100.00%
Bootstrap support for Q758W6 as seed ortholog is 100%.
Bootstrap support for F6SAX8 as seed ortholog is 100%.

Group of orthologs #1153. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:20 C.intestinalis:77

Q758J4              	100.00%		H2XW45              	100.00%
Bootstrap support for Q758J4 as seed ortholog is 77%.
Bootstrap support for H2XW45 as seed ortholog is 99%.

Group of orthologs #1154. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 C.intestinalis:121

Q75A97              	100.00%		I6L2C8              	100.00%
Bootstrap support for Q75A97 as seed ortholog is 100%.
Bootstrap support for I6L2C8 as seed ortholog is 100%.

Group of orthologs #1155. Best score 120 bits
Score difference with first non-orthologous sequence - A.gossypii:120 C.intestinalis:120

Q750R5              	100.00%		F7B963              	100.00%
                    	       		F6PI53              	66.46%
                    	       		H2XPZ0              	10.56%
Bootstrap support for Q750R5 as seed ortholog is 100%.
Bootstrap support for F7B963 as seed ortholog is 100%.

Group of orthologs #1156. Best score 120 bits
Score difference with first non-orthologous sequence - A.gossypii:120 C.intestinalis:120

Q752L4              	100.00%		F6R180              	100.00%
Bootstrap support for Q752L4 as seed ortholog is 100%.
Bootstrap support for F6R180 as seed ortholog is 100%.

Group of orthologs #1157. Best score 120 bits
Score difference with first non-orthologous sequence - A.gossypii:120 C.intestinalis:120

Q757H8              	100.00%		F6TSV6              	100.00%
Bootstrap support for Q757H8 as seed ortholog is 100%.
Bootstrap support for F6TSV6 as seed ortholog is 100%.

Group of orthologs #1158. Best score 120 bits
Score difference with first non-orthologous sequence - A.gossypii:28 C.intestinalis:120

Q75DI7              	100.00%		H2XQJ8              	100.00%
Bootstrap support for Q75DI7 as seed ortholog is 91%.
Bootstrap support for H2XQJ8 as seed ortholog is 100%.

Group of orthologs #1159. Best score 120 bits
Score difference with first non-orthologous sequence - A.gossypii:120 C.intestinalis:120

Q759T8              	100.00%		H2XWC1              	100.00%
Bootstrap support for Q759T8 as seed ortholog is 100%.
Bootstrap support for H2XWC1 as seed ortholog is 100%.

Group of orthologs #1160. Best score 120 bits
Score difference with first non-orthologous sequence - A.gossypii:63 C.intestinalis:120

Q750C6              	100.00%		Q1RPU6              	100.00%
Bootstrap support for Q750C6 as seed ortholog is 99%.
Bootstrap support for Q1RPU6 as seed ortholog is 100%.

Group of orthologs #1161. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.intestinalis:119

Q752B7              	100.00%		F6WPS3              	100.00%
Bootstrap support for Q752B7 as seed ortholog is 100%.
Bootstrap support for F6WPS3 as seed ortholog is 100%.

Group of orthologs #1162. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.intestinalis:119

Q756T5              	100.00%		F6XTZ6              	100.00%
Bootstrap support for Q756T5 as seed ortholog is 100%.
Bootstrap support for F6XTZ6 as seed ortholog is 100%.

Group of orthologs #1163. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.intestinalis:119

Q75B24              	100.00%		F6YA02              	100.00%
Bootstrap support for Q75B24 as seed ortholog is 100%.
Bootstrap support for F6YA02 as seed ortholog is 100%.

Group of orthologs #1164. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.intestinalis:119

Q75DP4              	100.00%		F6Y3X0              	100.00%
Bootstrap support for Q75DP4 as seed ortholog is 100%.
Bootstrap support for F6Y3X0 as seed ortholog is 100%.

Group of orthologs #1165. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.intestinalis:119

Q756P4              	100.00%		F7B9T1              	100.00%
Bootstrap support for Q756P4 as seed ortholog is 100%.
Bootstrap support for F7B9T1 as seed ortholog is 100%.

Group of orthologs #1166. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.intestinalis:72

Q75E22              	100.00%		H2XPR5              	100.00%
Bootstrap support for Q75E22 as seed ortholog is 100%.
Bootstrap support for H2XPR5 as seed ortholog is 99%.

Group of orthologs #1167. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.intestinalis:119

Q759T4              	100.00%		H2Y0Q6              	100.00%
Bootstrap support for Q759T4 as seed ortholog is 100%.
Bootstrap support for H2Y0Q6 as seed ortholog is 100%.

Group of orthologs #1168. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 C.intestinalis:118

Q757K3              	100.00%		F6PPJ7              	100.00%
Bootstrap support for Q757K3 as seed ortholog is 100%.
Bootstrap support for F6PPJ7 as seed ortholog is 100%.

Group of orthologs #1169. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 C.intestinalis:118

Q753C1              	100.00%		F6RR57              	100.00%
Bootstrap support for Q753C1 as seed ortholog is 100%.
Bootstrap support for F6RR57 as seed ortholog is 100%.

Group of orthologs #1170. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 C.intestinalis:118

Q753F5              	100.00%		F6X4K3              	100.00%
Bootstrap support for Q753F5 as seed ortholog is 100%.
Bootstrap support for F6X4K3 as seed ortholog is 100%.

Group of orthologs #1171. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 C.intestinalis:118

Q759N2              	100.00%		F6W3C3              	100.00%
Bootstrap support for Q759N2 as seed ortholog is 100%.
Bootstrap support for F6W3C3 as seed ortholog is 100%.

Group of orthologs #1172. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 C.intestinalis:70

Q754Z0              	100.00%		F7B012              	100.00%
Bootstrap support for Q754Z0 as seed ortholog is 100%.
Bootstrap support for F7B012 as seed ortholog is 99%.

Group of orthologs #1173. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 C.intestinalis:118

Q753Z0              	100.00%		H2XSZ1              	100.00%
Bootstrap support for Q753Z0 as seed ortholog is 100%.
Bootstrap support for H2XSZ1 as seed ortholog is 100%.

Group of orthologs #1174. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 C.intestinalis:118

Q75DL3              	100.00%		H2XKP6              	100.00%
Bootstrap support for Q75DL3 as seed ortholog is 100%.
Bootstrap support for H2XKP6 as seed ortholog is 100%.

Group of orthologs #1175. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.intestinalis:117

Q75E61              	100.00%		F6SFI7              	100.00%
                    	       		F6XFA8              	5.05%
Bootstrap support for Q75E61 as seed ortholog is 100%.
Bootstrap support for F6SFI7 as seed ortholog is 100%.

Group of orthologs #1176. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.intestinalis:117

Q754A7              	100.00%		F6QC45              	100.00%
Bootstrap support for Q754A7 as seed ortholog is 100%.
Bootstrap support for F6QC45 as seed ortholog is 100%.

Group of orthologs #1177. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.intestinalis:117

Q75AC0              	100.00%		F6SM47              	100.00%
Bootstrap support for Q75AC0 as seed ortholog is 100%.
Bootstrap support for F6SM47 as seed ortholog is 100%.

Group of orthologs #1178. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.intestinalis:117

Q758J6              	100.00%		F6TBF9              	100.00%
Bootstrap support for Q758J6 as seed ortholog is 100%.
Bootstrap support for F6TBF9 as seed ortholog is 100%.

Group of orthologs #1179. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.intestinalis:117

Q75A17              	100.00%		F6SV73              	100.00%
Bootstrap support for Q75A17 as seed ortholog is 100%.
Bootstrap support for F6SV73 as seed ortholog is 100%.

Group of orthologs #1180. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.intestinalis:117

Q75EQ1              	100.00%		F6XNX8              	100.00%
Bootstrap support for Q75EQ1 as seed ortholog is 100%.
Bootstrap support for F6XNX8 as seed ortholog is 100%.

Group of orthologs #1181. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.intestinalis:117

Q75CP6              	100.00%		F6Z8U5              	100.00%
Bootstrap support for Q75CP6 as seed ortholog is 100%.
Bootstrap support for F6Z8U5 as seed ortholog is 100%.

Group of orthologs #1182. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.intestinalis:117

Q75EE3              	100.00%		F6ZZX7              	100.00%
Bootstrap support for Q75EE3 as seed ortholog is 100%.
Bootstrap support for F6ZZX7 as seed ortholog is 100%.

Group of orthologs #1183. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.intestinalis:117

Q75DA3              	100.00%		F7BMN7              	100.00%
Bootstrap support for Q75DA3 as seed ortholog is 100%.
Bootstrap support for F7BMN7 as seed ortholog is 100%.

Group of orthologs #1184. Best score 116 bits
Score difference with first non-orthologous sequence - A.gossypii:116 C.intestinalis:116

Q757E9              	100.00%		H2XLN0              	100.00%
                    	       		F6VM60              	15.65%
Bootstrap support for Q757E9 as seed ortholog is 100%.
Bootstrap support for H2XLN0 as seed ortholog is 100%.

Group of orthologs #1185. Best score 116 bits
Score difference with first non-orthologous sequence - A.gossypii:116 C.intestinalis:116

Q75B71              	100.00%		F6QIV0              	100.00%
Bootstrap support for Q75B71 as seed ortholog is 100%.
Bootstrap support for F6QIV0 as seed ortholog is 100%.

Group of orthologs #1186. Best score 116 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:116

Q75CH9              	100.00%		F6RKQ2              	100.00%
Bootstrap support for Q75CH9 as seed ortholog is 90%.
Bootstrap support for F6RKQ2 as seed ortholog is 100%.

Group of orthologs #1187. Best score 116 bits
Score difference with first non-orthologous sequence - A.gossypii:116 C.intestinalis:67

Q752W1              	100.00%		H2XXD0              	100.00%
Bootstrap support for Q752W1 as seed ortholog is 100%.
Bootstrap support for H2XXD0 as seed ortholog is 92%.

Group of orthologs #1188. Best score 115 bits
Score difference with first non-orthologous sequence - A.gossypii:115 C.intestinalis:115

Q752E8              	100.00%		F6XHR2              	100.00%
Q759I8              	100.00%		F7AHM9              	100.00%
                    	       		H2Y369              	36.61%
                    	       		F6VSV8              	10.21%
Bootstrap support for Q752E8 as seed ortholog is 100%.
Bootstrap support for Q759I8 as seed ortholog is 100%.
Bootstrap support for F6XHR2 as seed ortholog is 100%.
Bootstrap support for F7AHM9 as seed ortholog is 100%.

Group of orthologs #1189. Best score 115 bits
Score difference with first non-orthologous sequence - A.gossypii:40 C.intestinalis:73

Q752A4              	100.00%		F6TA22              	100.00%
Bootstrap support for Q752A4 as seed ortholog is 86%.
Bootstrap support for F6TA22 as seed ortholog is 99%.

Group of orthologs #1190. Best score 115 bits
Score difference with first non-orthologous sequence - A.gossypii:115 C.intestinalis:115

Q751C8              	100.00%		F6XZL0              	100.00%
Bootstrap support for Q751C8 as seed ortholog is 100%.
Bootstrap support for F6XZL0 as seed ortholog is 100%.

Group of orthologs #1191. Best score 115 bits
Score difference with first non-orthologous sequence - A.gossypii:115 C.intestinalis:115

Q75F23              	100.00%		F6TIM2              	100.00%
Bootstrap support for Q75F23 as seed ortholog is 100%.
Bootstrap support for F6TIM2 as seed ortholog is 100%.

Group of orthologs #1192. Best score 115 bits
Score difference with first non-orthologous sequence - A.gossypii:115 C.intestinalis:115

Q75B96              	100.00%		H2XSG4              	100.00%
Bootstrap support for Q75B96 as seed ortholog is 100%.
Bootstrap support for H2XSG4 as seed ortholog is 100%.

Group of orthologs #1193. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:47 C.intestinalis:23

Q75F17              	100.00%		F6XUY3              	100.00%
                    	       		F6S855              	69.72%
                    	       		F6S880              	63.82%
                    	       		F6W3Q9              	43.50%
                    	       		F6UJQ6              	16.67%
                    	       		H2XY22              	16.06%
                    	       		F7BGH4              	13.62%
                    	       		F6U1Z9              	9.35%
Bootstrap support for Q75F17 as seed ortholog is 89%.
Bootstrap support for F6XUY3 as seed ortholog is 72%.
Alternative seed ortholog is F6VKL9 (23 bits away from this cluster)

Group of orthologs #1194. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.intestinalis:114

Q754R8              	100.00%		F6PHE6              	100.00%
Bootstrap support for Q754R8 as seed ortholog is 100%.
Bootstrap support for F6PHE6 as seed ortholog is 100%.

Group of orthologs #1195. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.intestinalis:114

Q75D12              	100.00%		F6RKZ8              	100.00%
Bootstrap support for Q75D12 as seed ortholog is 100%.
Bootstrap support for F6RKZ8 as seed ortholog is 100%.

Group of orthologs #1196. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.intestinalis:114

Q757L1              	100.00%		F6WRC9              	100.00%
Bootstrap support for Q757L1 as seed ortholog is 100%.
Bootstrap support for F6WRC9 as seed ortholog is 100%.

Group of orthologs #1197. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.intestinalis:114

Q750L4              	100.00%		F6Z3V6              	100.00%
Bootstrap support for Q750L4 as seed ortholog is 100%.
Bootstrap support for F6Z3V6 as seed ortholog is 100%.

Group of orthologs #1198. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.intestinalis:114

Q755L1              	100.00%		F6ZCF4              	100.00%
Bootstrap support for Q755L1 as seed ortholog is 100%.
Bootstrap support for F6ZCF4 as seed ortholog is 100%.

Group of orthologs #1199. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:43 C.intestinalis:114

Q75CF1              	100.00%		H2XKM5              	100.00%
Bootstrap support for Q75CF1 as seed ortholog is 99%.
Bootstrap support for H2XKM5 as seed ortholog is 100%.

Group of orthologs #1200. Best score 113 bits
Score difference with first non-orthologous sequence - A.gossypii:6 C.intestinalis:36

Q74Z16              	100.00%		F6W4G9              	100.00%
Bootstrap support for Q74Z16 as seed ortholog is 41%.
Alternative seed ortholog is Q75EC3 (6 bits away from this cluster)
Bootstrap support for F6W4G9 as seed ortholog is 84%.

Group of orthologs #1201. Best score 112 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.intestinalis:40

Q752K2              	100.00%		F6TXH8              	100.00%
                    	       		F6RY16              	26.87%
                    	       		F6ZT48              	23.42%
                    	       		F6WMS1              	19.58%
                    	       		F6WMR0              	12.09%
Bootstrap support for Q752K2 as seed ortholog is 95%.
Bootstrap support for F6TXH8 as seed ortholog is 87%.

Group of orthologs #1202. Best score 112 bits
Score difference with first non-orthologous sequence - A.gossypii:112 C.intestinalis:26

Q75CU2              	100.00%		F6W804              	100.00%
                    	       		F6Q9F4              	30.32%
Bootstrap support for Q75CU2 as seed ortholog is 100%.
Bootstrap support for F6W804 as seed ortholog is 76%.

Group of orthologs #1203. Best score 112 bits
Score difference with first non-orthologous sequence - A.gossypii:25 C.intestinalis:12

Q75BK5              	100.00%		F6UT38              	100.00%
Bootstrap support for Q75BK5 as seed ortholog is 91%.
Bootstrap support for F6UT38 as seed ortholog is 81%.

Group of orthologs #1204. Best score 112 bits
Score difference with first non-orthologous sequence - A.gossypii:112 C.intestinalis:112

Q75EG0              	100.00%		F6W023              	100.00%
Bootstrap support for Q75EG0 as seed ortholog is 100%.
Bootstrap support for F6W023 as seed ortholog is 100%.

Group of orthologs #1205. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.intestinalis:49

Q75AX6              	100.00%		F6S925              	100.00%
                    	       		F6S909              	41.65%
                    	       		Q4H398              	36.79%
                    	       		Q4H396              	24.31%
Bootstrap support for Q75AX6 as seed ortholog is 100%.
Bootstrap support for F6S925 as seed ortholog is 93%.

Group of orthologs #1206. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:7 C.intestinalis:37

Q75AX5              	100.00%		F6XFM9              	100.00%
Q751J1              	21.25%		
Bootstrap support for Q75AX5 as seed ortholog is 96%.
Bootstrap support for F6XFM9 as seed ortholog is 56%.
Alternative seed ortholog is H2XX67 (37 bits away from this cluster)

Group of orthologs #1207. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.intestinalis:111

Q74ZW6              	100.00%		F6WII1              	100.00%
Bootstrap support for Q74ZW6 as seed ortholog is 100%.
Bootstrap support for F6WII1 as seed ortholog is 100%.

Group of orthologs #1208. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.intestinalis:111

Q751T9              	100.00%		F6VZQ9              	100.00%
Bootstrap support for Q751T9 as seed ortholog is 100%.
Bootstrap support for F6VZQ9 as seed ortholog is 100%.

Group of orthologs #1209. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.intestinalis:111

Q752G0              	100.00%		F6YXW3              	100.00%
Bootstrap support for Q752G0 as seed ortholog is 100%.
Bootstrap support for F6YXW3 as seed ortholog is 100%.

Group of orthologs #1210. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:39 C.intestinalis:111

Q75D34              	100.00%		F6YG27              	100.00%
Bootstrap support for Q75D34 as seed ortholog is 80%.
Bootstrap support for F6YG27 as seed ortholog is 100%.

Group of orthologs #1211. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.intestinalis:111

Q75F86              	100.00%		F6XL41              	100.00%
Bootstrap support for Q75F86 as seed ortholog is 100%.
Bootstrap support for F6XL41 as seed ortholog is 100%.

Group of orthologs #1212. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.intestinalis:111

Q75B21              	100.00%		F7A6C5              	100.00%
Bootstrap support for Q75B21 as seed ortholog is 100%.
Bootstrap support for F7A6C5 as seed ortholog is 100%.

Group of orthologs #1213. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.intestinalis:111

Q75BS7              	100.00%		F7B4Q5              	100.00%
Bootstrap support for Q75BS7 as seed ortholog is 100%.
Bootstrap support for F7B4Q5 as seed ortholog is 100%.

Group of orthologs #1214. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.intestinalis:29

Q75DH6              	100.00%		F7ASZ2              	100.00%
Bootstrap support for Q75DH6 as seed ortholog is 100%.
Bootstrap support for F7ASZ2 as seed ortholog is 85%.

Group of orthologs #1215. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.intestinalis:44

Q752C9              	100.00%		H2XRI7              	100.00%
Bootstrap support for Q752C9 as seed ortholog is 100%.
Bootstrap support for H2XRI7 as seed ortholog is 88%.

Group of orthologs #1216. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.intestinalis:111

Q75EE2              	100.00%		H2XM46              	100.00%
Bootstrap support for Q75EE2 as seed ortholog is 100%.
Bootstrap support for H2XM46 as seed ortholog is 100%.

Group of orthologs #1217. Best score 110 bits
Score difference with first non-orthologous sequence - A.gossypii:110 C.intestinalis:110

Q758H2              	100.00%		F6QMA7              	100.00%
                    	       		H2XPQ4              	23.40%
Bootstrap support for Q758H2 as seed ortholog is 100%.
Bootstrap support for F6QMA7 as seed ortholog is 100%.

Group of orthologs #1218. Best score 110 bits
Score difference with first non-orthologous sequence - A.gossypii:110 C.intestinalis:110

Q753F4              	100.00%		H2XTZ1              	100.00%
                    	       		F6U5C3              	9.02%
Bootstrap support for Q753F4 as seed ortholog is 100%.
Bootstrap support for H2XTZ1 as seed ortholog is 100%.

Group of orthologs #1219. Best score 110 bits
Score difference with first non-orthologous sequence - A.gossypii:110 C.intestinalis:110

Q75A53              	100.00%		F6W0T2              	100.00%
Bootstrap support for Q75A53 as seed ortholog is 100%.
Bootstrap support for F6W0T2 as seed ortholog is 100%.

Group of orthologs #1220. Best score 110 bits
Score difference with first non-orthologous sequence - A.gossypii:110 C.intestinalis:110

Q75A65              	100.00%		F7AI05              	100.00%
Bootstrap support for Q75A65 as seed ortholog is 100%.
Bootstrap support for F7AI05 as seed ortholog is 100%.

Group of orthologs #1221. Best score 110 bits
Score difference with first non-orthologous sequence - A.gossypii:110 C.intestinalis:110

Q75AK5              	100.00%		H2XKS6              	100.00%
Bootstrap support for Q75AK5 as seed ortholog is 100%.
Bootstrap support for H2XKS6 as seed ortholog is 100%.

Group of orthologs #1222. Best score 110 bits
Score difference with first non-orthologous sequence - A.gossypii:110 C.intestinalis:110

Q758A5              	100.00%		H2XTN0              	100.00%
Bootstrap support for Q758A5 as seed ortholog is 100%.
Bootstrap support for H2XTN0 as seed ortholog is 100%.

Group of orthologs #1223. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.intestinalis:109

Q75BQ0              	100.00%		F6S8X6              	100.00%
                    	       		F6TP12              	100.00%
Bootstrap support for Q75BQ0 as seed ortholog is 100%.
Bootstrap support for F6S8X6 as seed ortholog is 100%.
Bootstrap support for F6TP12 as seed ortholog is 100%.

Group of orthologs #1224. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.intestinalis:47

Q755H7              	100.00%		F7AZT4              	100.00%
                    	       		H2Y123              	6.43%
Bootstrap support for Q755H7 as seed ortholog is 100%.
Bootstrap support for F7AZT4 as seed ortholog is 88%.

Group of orthologs #1225. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.intestinalis:109

Q750J5              	100.00%		F6RWU5              	100.00%
Bootstrap support for Q750J5 as seed ortholog is 100%.
Bootstrap support for F6RWU5 as seed ortholog is 100%.

Group of orthologs #1226. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.intestinalis:109

Q753B6              	100.00%		F6ZPU3              	100.00%
Bootstrap support for Q753B6 as seed ortholog is 100%.
Bootstrap support for F6ZPU3 as seed ortholog is 100%.

Group of orthologs #1227. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.intestinalis:109

Q75DZ3              	100.00%		F6ZQH5              	100.00%
Bootstrap support for Q75DZ3 as seed ortholog is 100%.
Bootstrap support for F6ZQH5 as seed ortholog is 100%.

Group of orthologs #1228. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.intestinalis:109

Q75DF4              	100.00%		F7BD80              	100.00%
Bootstrap support for Q75DF4 as seed ortholog is 100%.
Bootstrap support for F7BD80 as seed ortholog is 100%.

Group of orthologs #1229. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.intestinalis:109

Q756X8              	100.00%		H2XPF4              	100.00%
Bootstrap support for Q756X8 as seed ortholog is 100%.
Bootstrap support for H2XPF4 as seed ortholog is 100%.

Group of orthologs #1230. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.intestinalis:109

Q75G39              	100.00%		Q8HIN8              	100.00%
Bootstrap support for Q75G39 as seed ortholog is 100%.
Bootstrap support for Q8HIN8 as seed ortholog is 100%.

Group of orthologs #1231. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.intestinalis:27

Q758N3              	100.00%		H2Y260              	100.00%
                    	       		F6R6Q8              	45.67%
                    	       		H2Y1C2              	41.70%
                    	       		L7N0R2              	32.49%
                    	       		F6UAX0              	31.59%
                    	       		Q1RLF1              	31.05%
                    	       		H2XZX8              	30.14%
                    	       		H2XX05              	29.96%
                    	       		Q1RL43              	25.99%
                    	       		F6W0H5              	23.29%
                    	       		Q1RL67              	18.95%
                    	       		H2XKK9              	14.08%
                    	       		F6RSE2              	13.00%
                    	       		Q1RLE9              	12.82%
                    	       		F6TCA9              	12.09%
                    	       		F6WPJ4              	10.47%
                    	       		Q1RL62              	7.22%
                    	       		F6QEX4              	6.50%
                    	       		H2XYP9              	6.50%
                    	       		F6SXL4              	5.42%
Bootstrap support for Q758N3 as seed ortholog is 100%.
Bootstrap support for H2Y260 as seed ortholog is 70%.
Alternative seed ortholog is F6ZJ76 (27 bits away from this cluster)

Group of orthologs #1232. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.intestinalis:108

Q751Y7              	100.00%		F6YF30              	100.00%
Bootstrap support for Q751Y7 as seed ortholog is 100%.
Bootstrap support for F6YF30 as seed ortholog is 100%.

Group of orthologs #1233. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.intestinalis:108

Q75F37              	100.00%		H2XNK3              	100.00%
Bootstrap support for Q75F37 as seed ortholog is 100%.
Bootstrap support for H2XNK3 as seed ortholog is 100%.

Group of orthologs #1234. Best score 107 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.intestinalis:107

Q75C96              	100.00%		F6R407              	100.00%
Bootstrap support for Q75C96 as seed ortholog is 100%.
Bootstrap support for F6R407 as seed ortholog is 100%.

Group of orthologs #1235. Best score 107 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:107

Q75C43              	100.00%		F6USY8              	100.00%
Bootstrap support for Q75C43 as seed ortholog is 94%.
Bootstrap support for F6USY8 as seed ortholog is 100%.

Group of orthologs #1236. Best score 107 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.intestinalis:13

Q755J2              	100.00%		H2XSI3              	100.00%
Bootstrap support for Q755J2 as seed ortholog is 100%.
Bootstrap support for H2XSI3 as seed ortholog is 74%.
Alternative seed ortholog is F6W8L4 (13 bits away from this cluster)

Group of orthologs #1237. Best score 107 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.intestinalis:107

Q75A10              	100.00%		Q4H2Q4              	100.00%
Bootstrap support for Q75A10 as seed ortholog is 100%.
Bootstrap support for Q4H2Q4 as seed ortholog is 100%.

Group of orthologs #1238. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.intestinalis:106

Q75A14              	100.00%		F6PMD1              	100.00%
Bootstrap support for Q75A14 as seed ortholog is 100%.
Bootstrap support for F6PMD1 as seed ortholog is 100%.

Group of orthologs #1239. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:60 C.intestinalis:21

Q751H2              	100.00%		F6Y3J4              	100.00%
Bootstrap support for Q751H2 as seed ortholog is 94%.
Bootstrap support for F6Y3J4 as seed ortholog is 74%.
Alternative seed ortholog is F7AXY8 (21 bits away from this cluster)

Group of orthologs #1240. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.intestinalis:106

Q751Z7              	100.00%		F6YFR8              	100.00%
Bootstrap support for Q751Z7 as seed ortholog is 100%.
Bootstrap support for F6YFR8 as seed ortholog is 100%.

Group of orthologs #1241. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.intestinalis:106

Q752F0              	100.00%		F6ZG04              	100.00%
Bootstrap support for Q752F0 as seed ortholog is 100%.
Bootstrap support for F6ZG04 as seed ortholog is 100%.

Group of orthologs #1242. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.intestinalis:106

Q754Z9              	100.00%		F6ZF76              	100.00%
Bootstrap support for Q754Z9 as seed ortholog is 100%.
Bootstrap support for F6ZF76 as seed ortholog is 100%.

Group of orthologs #1243. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.intestinalis:27

Q754G3              	100.00%		F7A5D0              	100.00%
Bootstrap support for Q754G3 as seed ortholog is 100%.
Bootstrap support for F7A5D0 as seed ortholog is 71%.
Alternative seed ortholog is F6XMP8 (27 bits away from this cluster)

Group of orthologs #1244. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.intestinalis:106

Q75DF1              	100.00%		F6XR53              	100.00%
Bootstrap support for Q75DF1 as seed ortholog is 100%.
Bootstrap support for F6XR53 as seed ortholog is 100%.

Group of orthologs #1245. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.intestinalis:35

Q75DJ8              	100.00%		F6YB67              	100.00%
Bootstrap support for Q75DJ8 as seed ortholog is 100%.
Bootstrap support for F6YB67 as seed ortholog is 88%.

Group of orthologs #1246. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.intestinalis:106

Q75AX7              	100.00%		F7B3X8              	100.00%
Bootstrap support for Q75AX7 as seed ortholog is 93%.
Bootstrap support for F7B3X8 as seed ortholog is 100%.

Group of orthologs #1247. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.intestinalis:106

Q75DY2              	100.00%		H2Y3J4              	100.00%
Bootstrap support for Q75DY2 as seed ortholog is 100%.
Bootstrap support for H2Y3J4 as seed ortholog is 100%.

Group of orthologs #1248. Best score 105 bits
Score difference with first non-orthologous sequence - A.gossypii:105 C.intestinalis:105

Q751P9              	100.00%		F7AAN8              	100.00%
                    	       		H2XYH1              	67.67%
                    	       		F6SKK8              	8.83%
Bootstrap support for Q751P9 as seed ortholog is 100%.
Bootstrap support for F7AAN8 as seed ortholog is 100%.

Group of orthologs #1249. Best score 105 bits
Score difference with first non-orthologous sequence - A.gossypii:105 C.intestinalis:105

Q750R9              	100.00%		F6VQX3              	100.00%
Bootstrap support for Q750R9 as seed ortholog is 100%.
Bootstrap support for F6VQX3 as seed ortholog is 100%.

Group of orthologs #1250. Best score 105 bits
Score difference with first non-orthologous sequence - A.gossypii:105 C.intestinalis:105

Q75EL9              	100.00%		F6UK15              	100.00%
Bootstrap support for Q75EL9 as seed ortholog is 100%.
Bootstrap support for F6UK15 as seed ortholog is 100%.

Group of orthologs #1251. Best score 105 bits
Score difference with first non-orthologous sequence - A.gossypii:53 C.intestinalis:30

Q75DE1              	100.00%		F6WS92              	100.00%
Bootstrap support for Q75DE1 as seed ortholog is 95%.
Bootstrap support for F6WS92 as seed ortholog is 86%.

Group of orthologs #1252. Best score 105 bits
Score difference with first non-orthologous sequence - A.gossypii:105 C.intestinalis:2

Q75F52              	100.00%		F6YGF8              	100.00%
Bootstrap support for Q75F52 as seed ortholog is 100%.
Bootstrap support for F6YGF8 as seed ortholog is 48%.
Alternative seed ortholog is F6PLY6 (2 bits away from this cluster)

Group of orthologs #1253. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.intestinalis:104

Q752F4              	100.00%		H2Y1N3              	100.00%
                    	       		F6W7L1              	75.63%
                    	       		F6XCJ9              	75.18%
                    	       		F6W833              	56.00%
                    	       		L7N0R6              	53.32%
                    	       		F6VSX4              	36.83%
                    	       		F6V5T4              	36.02%
Bootstrap support for Q752F4 as seed ortholog is 100%.
Bootstrap support for H2Y1N3 as seed ortholog is 100%.

Group of orthologs #1254. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.intestinalis:15

Q75EJ5              	100.00%		F6YZ62              	100.00%
Q757I1              	88.69%		F6UEA0              	29.20%
Q75DQ0              	66.23%		F6Z103              	19.72%
Bootstrap support for Q75EJ5 as seed ortholog is 100%.
Bootstrap support for F6YZ62 as seed ortholog is 64%.
Alternative seed ortholog is F6TKR9 (15 bits away from this cluster)

Group of orthologs #1255. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:17 C.intestinalis:104

Q754S6              	100.00%		F6QZ03              	100.00%
Bootstrap support for Q754S6 as seed ortholog is 74%.
Alternative seed ortholog is Q756K7 (17 bits away from this cluster)
Bootstrap support for F6QZ03 as seed ortholog is 100%.

Group of orthologs #1256. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.intestinalis:104

Q752Z3              	100.00%		F6TCF1              	100.00%
Bootstrap support for Q752Z3 as seed ortholog is 100%.
Bootstrap support for F6TCF1 as seed ortholog is 100%.

Group of orthologs #1257. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.intestinalis:104

Q754Y4              	100.00%		F6U1Q3              	100.00%
Bootstrap support for Q754Y4 as seed ortholog is 100%.
Bootstrap support for F6U1Q3 as seed ortholog is 100%.

Group of orthologs #1258. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.intestinalis:15

Q754T9              	100.00%		F6X134              	100.00%
Bootstrap support for Q754T9 as seed ortholog is 100%.
Bootstrap support for F6X134 as seed ortholog is 70%.
Alternative seed ortholog is H2XP13 (15 bits away from this cluster)

Group of orthologs #1259. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.intestinalis:47

Q755M6              	100.00%		F6YVQ1              	100.00%
Bootstrap support for Q755M6 as seed ortholog is 100%.
Bootstrap support for F6YVQ1 as seed ortholog is 99%.

Group of orthologs #1260. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.intestinalis:60

Q75AI6              	100.00%		F6ZLL7              	100.00%
Bootstrap support for Q75AI6 as seed ortholog is 100%.
Bootstrap support for F6ZLL7 as seed ortholog is 96%.

Group of orthologs #1261. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:4 C.intestinalis:103

Q757W2              	100.00%		F6V2A4              	100.00%
                    	       		F6WAB5              	19.80%
Bootstrap support for Q757W2 as seed ortholog is 64%.
Alternative seed ortholog is Q75B40 (4 bits away from this cluster)
Bootstrap support for F6V2A4 as seed ortholog is 100%.

Group of orthologs #1262. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.intestinalis:103

Q75EZ3              	100.00%		F6PZM1              	100.00%
Bootstrap support for Q75EZ3 as seed ortholog is 100%.
Bootstrap support for F6PZM1 as seed ortholog is 100%.

Group of orthologs #1263. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.intestinalis:103

Q75CA1              	100.00%		F6Y4F7              	100.00%
Bootstrap support for Q75CA1 as seed ortholog is 100%.
Bootstrap support for F6Y4F7 as seed ortholog is 100%.

Group of orthologs #1264. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.intestinalis:38

Q75AR2              	100.00%		F6YVE9              	100.00%
Bootstrap support for Q75AR2 as seed ortholog is 100%.
Bootstrap support for F6YVE9 as seed ortholog is 90%.

Group of orthologs #1265. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.intestinalis:103

Q753P0              	100.00%		F7BB49              	100.00%
Bootstrap support for Q753P0 as seed ortholog is 100%.
Bootstrap support for F7BB49 as seed ortholog is 100%.

Group of orthologs #1266. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.intestinalis:103

Q75B32              	100.00%		F7B480              	100.00%
Bootstrap support for Q75B32 as seed ortholog is 100%.
Bootstrap support for F7B480 as seed ortholog is 100%.

Group of orthologs #1267. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.intestinalis:103

Q75AD0              	100.00%		H2XLA2              	100.00%
Bootstrap support for Q75AD0 as seed ortholog is 100%.
Bootstrap support for H2XLA2 as seed ortholog is 100%.

Group of orthologs #1268. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.intestinalis:102

Q750X4              	100.00%		F6QXX8              	100.00%
Bootstrap support for Q750X4 as seed ortholog is 100%.
Bootstrap support for F6QXX8 as seed ortholog is 100%.

Group of orthologs #1269. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.intestinalis:102

Q755K2              	100.00%		F6QDX7              	100.00%
Bootstrap support for Q755K2 as seed ortholog is 100%.
Bootstrap support for F6QDX7 as seed ortholog is 100%.

Group of orthologs #1270. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.intestinalis:102

Q75EA5              	100.00%		F6WGY1              	100.00%
Bootstrap support for Q75EA5 as seed ortholog is 100%.
Bootstrap support for F6WGY1 as seed ortholog is 100%.

Group of orthologs #1271. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.intestinalis:102

Q759H3              	100.00%		F6YLW1              	100.00%
Bootstrap support for Q759H3 as seed ortholog is 100%.
Bootstrap support for F6YLW1 as seed ortholog is 100%.

Group of orthologs #1272. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:8 C.intestinalis:102

Q756C5              	100.00%		F7BDH1              	100.00%
Bootstrap support for Q756C5 as seed ortholog is 50%.
Alternative seed ortholog is Q74ZJ6 (8 bits away from this cluster)
Bootstrap support for F7BDH1 as seed ortholog is 100%.

Group of orthologs #1273. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.intestinalis:30

Q753R3              	100.00%		H2XR04              	100.00%
Bootstrap support for Q753R3 as seed ortholog is 100%.
Bootstrap support for H2XR04 as seed ortholog is 96%.

Group of orthologs #1274. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.intestinalis:102

Q75EY1              	100.00%		F7BME9              	100.00%
Bootstrap support for Q75EY1 as seed ortholog is 100%.
Bootstrap support for F7BME9 as seed ortholog is 100%.

Group of orthologs #1275. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.intestinalis:39

Q759T0              	100.00%		Q2PEE1              	100.00%
Bootstrap support for Q759T0 as seed ortholog is 100%.
Bootstrap support for Q2PEE1 as seed ortholog is 99%.

Group of orthologs #1276. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:29 C.intestinalis:30

Q75AW7              	100.00%		Q1RPW1              	100.00%
Bootstrap support for Q75AW7 as seed ortholog is 78%.
Bootstrap support for Q1RPW1 as seed ortholog is 80%.

Group of orthologs #1277. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:101

Q756N6              	100.00%		F6U0I8              	100.00%
                    	       		F6QJQ8              	18.17%
Bootstrap support for Q756N6 as seed ortholog is 100%.
Bootstrap support for F6U0I8 as seed ortholog is 100%.

Group of orthologs #1278. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:101

Q74ZL5              	100.00%		F6YAZ4              	100.00%
Q8J1F8              	81.88%		
Bootstrap support for Q74ZL5 as seed ortholog is 100%.
Bootstrap support for F6YAZ4 as seed ortholog is 100%.

Group of orthologs #1279. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:15

Q75BX2              	100.00%		F6Z010              	100.00%
Q75D28              	12.56%		
Bootstrap support for Q75BX2 as seed ortholog is 100%.
Bootstrap support for F6Z010 as seed ortholog is 64%.
Alternative seed ortholog is F6QAK1 (15 bits away from this cluster)

Group of orthologs #1280. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:101

Q75BZ5              	100.00%		H2XNW6              	100.00%
                    	       		H2XLB1              	35.50%
Bootstrap support for Q75BZ5 as seed ortholog is 100%.
Bootstrap support for H2XNW6 as seed ortholog is 100%.

Group of orthologs #1281. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:101

Q751L1              	100.00%		F6UG66              	100.00%
Bootstrap support for Q751L1 as seed ortholog is 100%.
Bootstrap support for F6UG66 as seed ortholog is 100%.

Group of orthologs #1282. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:52

Q756R8              	100.00%		F6UNM5              	100.00%
Bootstrap support for Q756R8 as seed ortholog is 100%.
Bootstrap support for F6UNM5 as seed ortholog is 94%.

Group of orthologs #1283. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:101

Q753Q8              	100.00%		F6WEC1              	100.00%
Bootstrap support for Q753Q8 as seed ortholog is 100%.
Bootstrap support for F6WEC1 as seed ortholog is 100%.

Group of orthologs #1284. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:101

Q75BB6              	100.00%		F7BKM3              	100.00%
Bootstrap support for Q75BB6 as seed ortholog is 100%.
Bootstrap support for F7BKM3 as seed ortholog is 100%.

Group of orthologs #1285. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:101

Q74Z69              	100.00%		H2Y1H3              	100.00%
Bootstrap support for Q74Z69 as seed ortholog is 100%.
Bootstrap support for H2Y1H3 as seed ortholog is 100%.

Group of orthologs #1286. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:101

Q75BZ9              	100.00%		H2XWE7              	100.00%
Bootstrap support for Q75BZ9 as seed ortholog is 100%.
Bootstrap support for H2XWE7 as seed ortholog is 100%.

Group of orthologs #1287. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:101

Q75DP9              	100.00%		H2XWG7              	100.00%
Bootstrap support for Q75DP9 as seed ortholog is 100%.
Bootstrap support for H2XWG7 as seed ortholog is 100%.

Group of orthologs #1288. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.intestinalis:101

Q757M2              	100.00%		Q1RPZ2              	100.00%
Bootstrap support for Q757M2 as seed ortholog is 100%.
Bootstrap support for Q1RPZ2 as seed ortholog is 100%.

Group of orthologs #1289. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:9 C.intestinalis:34

Q755Z4              	100.00%		F6TXI5              	100.00%
                    	       		F7AWY7              	26.69%
                    	       		F7BEK9              	26.69%
                    	       		F6U973              	26.10%
                    	       		F7BDP7              	22.87%
                    	       		F6VXK0              	21.99%
                    	       		F6XKL3              	21.41%
                    	       		H2XS77              	21.11%
                    	       		H2XZS1              	21.11%
                    	       		F6S294              	19.35%
                    	       		L7N0R4              	18.77%
                    	       		F6S2B0              	18.18%
                    	       		F6XKJ1              	17.60%
                    	       		F7B9X1              	17.01%
                    	       		H2XUP4              	14.66%
Bootstrap support for Q755Z4 as seed ortholog is 69%.
Alternative seed ortholog is Q75CX5 (9 bits away from this cluster)
Bootstrap support for F6TXI5 as seed ortholog is 90%.

Group of orthologs #1290. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.intestinalis:100

Q751I1              	100.00%		F6QSH0              	100.00%
Bootstrap support for Q751I1 as seed ortholog is 100%.
Bootstrap support for F6QSH0 as seed ortholog is 100%.

Group of orthologs #1291. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.intestinalis:100

Q751L5              	100.00%		F6QSC7              	100.00%
Bootstrap support for Q751L5 as seed ortholog is 100%.
Bootstrap support for F6QSC7 as seed ortholog is 100%.

Group of orthologs #1292. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.intestinalis:100

Q750G9              	100.00%		F6VN74              	100.00%
Bootstrap support for Q750G9 as seed ortholog is 100%.
Bootstrap support for F6VN74 as seed ortholog is 100%.

Group of orthologs #1293. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.intestinalis:100

Q75DT3              	100.00%		F6RJZ1              	100.00%
Bootstrap support for Q75DT3 as seed ortholog is 100%.
Bootstrap support for F6RJZ1 as seed ortholog is 100%.

Group of orthologs #1294. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.intestinalis:100

Q75C01              	100.00%		F6VSM2              	100.00%
Bootstrap support for Q75C01 as seed ortholog is 100%.
Bootstrap support for F6VSM2 as seed ortholog is 100%.

Group of orthologs #1295. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.intestinalis:100

Q75EQ8              	100.00%		F6VA08              	100.00%
Bootstrap support for Q75EQ8 as seed ortholog is 100%.
Bootstrap support for F6VA08 as seed ortholog is 100%.

Group of orthologs #1296. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.intestinalis:52

Q74ZG5              	100.00%		F7ART8              	100.00%
Bootstrap support for Q74ZG5 as seed ortholog is 100%.
Bootstrap support for F7ART8 as seed ortholog is 90%.

Group of orthologs #1297. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.intestinalis:39

Q759K6              	100.00%		F6Z8S6              	100.00%
Bootstrap support for Q759K6 as seed ortholog is 100%.
Bootstrap support for F6Z8S6 as seed ortholog is 95%.

Group of orthologs #1298. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:38 C.intestinalis:20

Q75CB3              	100.00%		F7A3S4              	100.00%
Q753H5              	30.11%		F6YQI1              	63.83%
Bootstrap support for Q75CB3 as seed ortholog is 87%.
Bootstrap support for F7A3S4 as seed ortholog is 70%.
Alternative seed ortholog is F6VJ60 (20 bits away from this cluster)

Group of orthologs #1299. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.intestinalis:99

Q753H3              	100.00%		F6SRF9              	100.00%
                    	       		F6RKY2              	8.11%
Bootstrap support for Q753H3 as seed ortholog is 100%.
Bootstrap support for F6SRF9 as seed ortholog is 100%.

Group of orthologs #1300. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:40 C.intestinalis:35

Q75B64              	100.00%		H2XJR2              	100.00%
                    	       		F6WB20              	22.53%
Bootstrap support for Q75B64 as seed ortholog is 90%.
Bootstrap support for H2XJR2 as seed ortholog is 86%.

Group of orthologs #1301. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.intestinalis:99

Q756W8              	100.00%		F6RB18              	100.00%
Bootstrap support for Q756W8 as seed ortholog is 100%.
Bootstrap support for F6RB18 as seed ortholog is 100%.

Group of orthologs #1302. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.intestinalis:99

Q751W7              	100.00%		F6V1C0              	100.00%
Bootstrap support for Q751W7 as seed ortholog is 100%.
Bootstrap support for F6V1C0 as seed ortholog is 100%.

Group of orthologs #1303. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.intestinalis:99

Q752K5              	100.00%		F7BK44              	100.00%
Bootstrap support for Q752K5 as seed ortholog is 100%.
Bootstrap support for F7BK44 as seed ortholog is 100%.

Group of orthologs #1304. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.intestinalis:99

Q758R4              	100.00%		F6ZZC3              	100.00%
Bootstrap support for Q758R4 as seed ortholog is 100%.
Bootstrap support for F6ZZC3 as seed ortholog is 100%.

Group of orthologs #1305. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.intestinalis:19

Q75FA9              	100.00%		F6YLR6              	100.00%
Bootstrap support for Q75FA9 as seed ortholog is 100%.
Bootstrap support for F6YLR6 as seed ortholog is 68%.
Alternative seed ortholog is F6W9F7 (19 bits away from this cluster)

Group of orthologs #1306. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.intestinalis:38

Q754K8              	100.00%		H2XLZ2              	100.00%
Bootstrap support for Q754K8 as seed ortholog is 100%.
Bootstrap support for H2XLZ2 as seed ortholog is 97%.

Group of orthologs #1307. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.intestinalis:99

Q75D45              	100.00%		F7B503              	100.00%
Bootstrap support for Q75D45 as seed ortholog is 100%.
Bootstrap support for F7B503 as seed ortholog is 100%.

Group of orthologs #1308. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:39 C.intestinalis:99

Q757N8              	100.00%		H2XNY0              	100.00%
Bootstrap support for Q757N8 as seed ortholog is 96%.
Bootstrap support for H2XNY0 as seed ortholog is 100%.

Group of orthologs #1309. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.intestinalis:48

Q754T0              	100.00%		H2XTW5              	100.00%
Bootstrap support for Q754T0 as seed ortholog is 100%.
Bootstrap support for H2XTW5 as seed ortholog is 94%.

Group of orthologs #1310. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:98

Q755B4              	100.00%		F6RGQ1              	100.00%
Bootstrap support for Q755B4 as seed ortholog is 100%.
Bootstrap support for F6RGQ1 as seed ortholog is 100%.

Group of orthologs #1311. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:98

Q75A56              	100.00%		F6Q521              	100.00%
Bootstrap support for Q75A56 as seed ortholog is 100%.
Bootstrap support for F6Q521 as seed ortholog is 100%.

Group of orthologs #1312. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:98

E7FHY2              	100.00%		F6UTK0              	100.00%
Bootstrap support for E7FHY2 as seed ortholog is 100%.
Bootstrap support for F6UTK0 as seed ortholog is 100%.

Group of orthologs #1313. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:98

Q755N6              	100.00%		F6SST4              	100.00%
Bootstrap support for Q755N6 as seed ortholog is 100%.
Bootstrap support for F6SST4 as seed ortholog is 100%.

Group of orthologs #1314. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:98

Q750K3              	100.00%		F6VXS0              	100.00%
Bootstrap support for Q750K3 as seed ortholog is 100%.
Bootstrap support for F6VXS0 as seed ortholog is 100%.

Group of orthologs #1315. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:98

Q75DJ1              	100.00%		F6R2C6              	100.00%
Bootstrap support for Q75DJ1 as seed ortholog is 100%.
Bootstrap support for F6R2C6 as seed ortholog is 100%.

Group of orthologs #1316. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:51

Q74ZF3              	100.00%		F6WF37              	100.00%
Bootstrap support for Q74ZF3 as seed ortholog is 100%.
Bootstrap support for F6WF37 as seed ortholog is 94%.

Group of orthologs #1317. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:98

Q74ZD8              	100.00%		F6YMZ5              	100.00%
Bootstrap support for Q74ZD8 as seed ortholog is 100%.
Bootstrap support for F6YMZ5 as seed ortholog is 100%.

Group of orthologs #1318. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:7 C.intestinalis:98

Q75AL1              	100.00%		F6XT02              	100.00%
Bootstrap support for Q75AL1 as seed ortholog is 94%.
Bootstrap support for F6XT02 as seed ortholog is 100%.

Group of orthologs #1319. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:98

Q75F19              	100.00%		F6W2W3              	100.00%
Bootstrap support for Q75F19 as seed ortholog is 100%.
Bootstrap support for F6W2W3 as seed ortholog is 100%.

Group of orthologs #1320. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:98

Q751P0              	100.00%		H2XVS4              	100.00%
Bootstrap support for Q751P0 as seed ortholog is 100%.
Bootstrap support for H2XVS4 as seed ortholog is 100%.

Group of orthologs #1321. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.intestinalis:98

Q75E69              	100.00%		H2XUI3              	100.00%
Bootstrap support for Q75E69 as seed ortholog is 100%.
Bootstrap support for H2XUI3 as seed ortholog is 100%.

Group of orthologs #1322. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:97 C.intestinalis:97

Q751H4              	100.00%		F6Q7X0              	100.00%
Bootstrap support for Q751H4 as seed ortholog is 100%.
Bootstrap support for F6Q7X0 as seed ortholog is 100%.

Group of orthologs #1323. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:97 C.intestinalis:97

Q757V6              	100.00%		F6QQ49              	100.00%
Bootstrap support for Q757V6 as seed ortholog is 100%.
Bootstrap support for F6QQ49 as seed ortholog is 100%.

Group of orthologs #1324. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:97 C.intestinalis:97

Q758C2              	100.00%		F6ZFW2              	100.00%
Bootstrap support for Q758C2 as seed ortholog is 100%.
Bootstrap support for F6ZFW2 as seed ortholog is 100%.

Group of orthologs #1325. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:97 C.intestinalis:97

Q75B61              	100.00%		F6ZA03              	100.00%
Bootstrap support for Q75B61 as seed ortholog is 100%.
Bootstrap support for F6ZA03 as seed ortholog is 100%.

Group of orthologs #1326. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:97 C.intestinalis:43

Q758Y7              	100.00%		F7AKT1              	100.00%
Bootstrap support for Q758Y7 as seed ortholog is 100%.
Bootstrap support for F7AKT1 as seed ortholog is 95%.

Group of orthologs #1327. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:97 C.intestinalis:51

Q750X9              	100.00%		H2XZN8              	100.00%
Bootstrap support for Q750X9 as seed ortholog is 100%.
Bootstrap support for H2XZN8 as seed ortholog is 90%.

Group of orthologs #1328. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.intestinalis:96

Q750Y3              	100.00%		F6V304              	100.00%
                    	       		F6YWK0              	8.86%
Bootstrap support for Q750Y3 as seed ortholog is 100%.
Bootstrap support for F6V304 as seed ortholog is 100%.

Group of orthologs #1329. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:20 C.intestinalis:96

Q758I7              	100.00%		F6QD73              	100.00%
Bootstrap support for Q758I7 as seed ortholog is 71%.
Alternative seed ortholog is Q75E87 (20 bits away from this cluster)
Bootstrap support for F6QD73 as seed ortholog is 100%.

Group of orthologs #1330. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.intestinalis:96

Q755N7              	100.00%		F6T6Y7              	100.00%
Bootstrap support for Q755N7 as seed ortholog is 100%.
Bootstrap support for F6T6Y7 as seed ortholog is 100%.

Group of orthologs #1331. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.intestinalis:96

Q74ZE5              	100.00%		F6X5Q9              	100.00%
Bootstrap support for Q74ZE5 as seed ortholog is 100%.
Bootstrap support for F6X5Q9 as seed ortholog is 100%.

Group of orthologs #1332. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.intestinalis:47

Q750R8              	100.00%		F6WUF6              	100.00%
Bootstrap support for Q750R8 as seed ortholog is 100%.
Bootstrap support for F6WUF6 as seed ortholog is 97%.

Group of orthologs #1333. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.intestinalis:96

Q758N0              	100.00%		F6UFF5              	100.00%
Bootstrap support for Q758N0 as seed ortholog is 100%.
Bootstrap support for F6UFF5 as seed ortholog is 100%.

Group of orthologs #1334. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.intestinalis:96

Q756Z3              	100.00%		H2XV68              	100.00%
Bootstrap support for Q756Z3 as seed ortholog is 100%.
Bootstrap support for H2XV68 as seed ortholog is 100%.

Group of orthologs #1335. Best score 95 bits
Score difference with first non-orthologous sequence - A.gossypii:95 C.intestinalis:95

Q752Q3              	100.00%		F6PU76              	100.00%
Bootstrap support for Q752Q3 as seed ortholog is 100%.
Bootstrap support for F6PU76 as seed ortholog is 100%.

Group of orthologs #1336. Best score 95 bits
Score difference with first non-orthologous sequence - A.gossypii:95 C.intestinalis:95

Q759W3              	100.00%		F6R4T5              	100.00%
Bootstrap support for Q759W3 as seed ortholog is 100%.
Bootstrap support for F6R4T5 as seed ortholog is 100%.

Group of orthologs #1337. Best score 95 bits
Score difference with first non-orthologous sequence - A.gossypii:36 C.intestinalis:95

Q75CB4              	100.00%		F6UMH6              	100.00%
Bootstrap support for Q75CB4 as seed ortholog is 93%.
Bootstrap support for F6UMH6 as seed ortholog is 100%.

Group of orthologs #1338. Best score 95 bits
Score difference with first non-orthologous sequence - A.gossypii:95 C.intestinalis:95

Q753S7              	100.00%		F6ZIQ8              	100.00%
Bootstrap support for Q753S7 as seed ortholog is 100%.
Bootstrap support for F6ZIQ8 as seed ortholog is 100%.

Group of orthologs #1339. Best score 95 bits
Score difference with first non-orthologous sequence - A.gossypii:95 C.intestinalis:95

Q75BB9              	100.00%		H2XXI7              	100.00%
Bootstrap support for Q75BB9 as seed ortholog is 100%.
Bootstrap support for H2XXI7 as seed ortholog is 100%.

Group of orthologs #1340. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 C.intestinalis:94

Q752F2              	100.00%		F6S1J5              	100.00%
                    	       		F6VL03              	26.38%
                    	       		F6YSJ3              	23.72%
                    	       		Q5SE06              	22.29%
                    	       		F6XRM9              	9.61%
Bootstrap support for Q752F2 as seed ortholog is 100%.
Bootstrap support for F6S1J5 as seed ortholog is 100%.

Group of orthologs #1341. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:9 C.intestinalis:94

Q75A94              	100.00%		F6V8N0              	100.00%
                    	       		H2Y092              	14.94%
                    	       		F6YAT7              	5.65%
Bootstrap support for Q75A94 as seed ortholog is 56%.
Alternative seed ortholog is Q757P7 (9 bits away from this cluster)
Bootstrap support for F6V8N0 as seed ortholog is 100%.

Group of orthologs #1342. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 C.intestinalis:94

Q757N0              	100.00%		F6TV26              	100.00%
Bootstrap support for Q757N0 as seed ortholog is 100%.
Bootstrap support for F6TV26 as seed ortholog is 100%.

Group of orthologs #1343. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 C.intestinalis:40

Q756L1              	100.00%		F6W510              	100.00%
Bootstrap support for Q756L1 as seed ortholog is 100%.
Bootstrap support for F6W510 as seed ortholog is 80%.

Group of orthologs #1344. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:36 C.intestinalis:94

Q751K2              	100.00%		F6YF45              	100.00%
Bootstrap support for Q751K2 as seed ortholog is 96%.
Bootstrap support for F6YF45 as seed ortholog is 100%.

Group of orthologs #1345. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 C.intestinalis:94

Q755D0              	100.00%		F6YU96              	100.00%
Bootstrap support for Q755D0 as seed ortholog is 100%.
Bootstrap support for F6YU96 as seed ortholog is 100%.

Group of orthologs #1346. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 C.intestinalis:94

Q75G38              	100.00%		H2XMB9              	100.00%
Bootstrap support for Q75G38 as seed ortholog is 100%.
Bootstrap support for H2XMB9 as seed ortholog is 100%.

Group of orthologs #1347. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 C.intestinalis:11

Q75AV7              	100.00%		H2Y2E7              	100.00%
Bootstrap support for Q75AV7 as seed ortholog is 100%.
Bootstrap support for H2Y2E7 as seed ortholog is 62%.
Alternative seed ortholog is F6YD02 (11 bits away from this cluster)

Group of orthologs #1348. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.intestinalis:93

Q755C6              	100.00%		F6QHG7              	100.00%
Bootstrap support for Q755C6 as seed ortholog is 100%.
Bootstrap support for F6QHG7 as seed ortholog is 100%.

Group of orthologs #1349. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.intestinalis:93

Q750E1              	100.00%		F6VKK3              	100.00%
Bootstrap support for Q750E1 as seed ortholog is 100%.
Bootstrap support for F6VKK3 as seed ortholog is 100%.

Group of orthologs #1350. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.intestinalis:93

Q75DL1              	100.00%		F6WCB0              	100.00%
Bootstrap support for Q75DL1 as seed ortholog is 100%.
Bootstrap support for F6WCB0 as seed ortholog is 100%.

Group of orthologs #1351. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.intestinalis:93

Q75DT7              	100.00%		H2Y216              	100.00%
Bootstrap support for Q75DT7 as seed ortholog is 100%.
Bootstrap support for H2Y216 as seed ortholog is 100%.

Group of orthologs #1352. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.intestinalis:3

Q75EC5              	100.00%		F6TIT1              	100.00%
Bootstrap support for Q75EC5 as seed ortholog is 100%.
Bootstrap support for F6TIT1 as seed ortholog is 53%.
Alternative seed ortholog is H2XL14 (3 bits away from this cluster)

Group of orthologs #1353. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.intestinalis:92

Q755F2              	100.00%		F6ZRA2              	100.00%
Bootstrap support for Q755F2 as seed ortholog is 100%.
Bootstrap support for F6ZRA2 as seed ortholog is 100%.

Group of orthologs #1354. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.intestinalis:92

Q751A9              	100.00%		F7BD35              	100.00%
Bootstrap support for Q751A9 as seed ortholog is 100%.
Bootstrap support for F7BD35 as seed ortholog is 100%.

Group of orthologs #1355. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.intestinalis:92

Q755I6              	100.00%		F7B7K2              	100.00%
Bootstrap support for Q755I6 as seed ortholog is 100%.
Bootstrap support for F7B7K2 as seed ortholog is 100%.

Group of orthologs #1356. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.intestinalis:92

Q75AA9              	100.00%		F7A4V3              	100.00%
Bootstrap support for Q75AA9 as seed ortholog is 100%.
Bootstrap support for F7A4V3 as seed ortholog is 100%.

Group of orthologs #1357. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.intestinalis:92

Q75ET4              	100.00%		F6YLZ5              	100.00%
Bootstrap support for Q75ET4 as seed ortholog is 100%.
Bootstrap support for F6YLZ5 as seed ortholog is 100%.

Group of orthologs #1358. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.intestinalis:92

Q75F42              	100.00%		F7BI62              	100.00%
Bootstrap support for Q75F42 as seed ortholog is 100%.
Bootstrap support for F7BI62 as seed ortholog is 100%.

Group of orthologs #1359. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.intestinalis:92

Q751F1              	100.00%		Q4H3U1              	100.00%
Bootstrap support for Q751F1 as seed ortholog is 100%.
Bootstrap support for Q4H3U1 as seed ortholog is 100%.

Group of orthologs #1360. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.intestinalis:91

Q757A0              	100.00%		F6UCW1              	100.00%
Bootstrap support for Q757A0 as seed ortholog is 100%.
Bootstrap support for F6UCW1 as seed ortholog is 100%.

Group of orthologs #1361. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.intestinalis:91

Q75C54              	100.00%		F6VR17              	100.00%
Bootstrap support for Q75C54 as seed ortholog is 100%.
Bootstrap support for F6VR17 as seed ortholog is 100%.

Group of orthologs #1362. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:29 C.intestinalis:40

Q75CQ0              	100.00%		F6YXQ0              	100.00%
Bootstrap support for Q75CQ0 as seed ortholog is 90%.
Bootstrap support for F6YXQ0 as seed ortholog is 96%.

Group of orthologs #1363. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.intestinalis:91

Q750P9              	100.00%		H2XLH0              	100.00%
Bootstrap support for Q750P9 as seed ortholog is 100%.
Bootstrap support for H2XLH0 as seed ortholog is 100%.

Group of orthologs #1364. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.intestinalis:91

Q758J7              	100.00%		H2XJN8              	100.00%
Bootstrap support for Q758J7 as seed ortholog is 100%.
Bootstrap support for H2XJN8 as seed ortholog is 100%.

Group of orthologs #1365. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:46 C.intestinalis:91

Q754L9              	100.00%		H2XY81              	100.00%
Bootstrap support for Q754L9 as seed ortholog is 99%.
Bootstrap support for H2XY81 as seed ortholog is 100%.

Group of orthologs #1366. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.intestinalis:91

Q759U3              	100.00%		H2XVJ7              	100.00%
Bootstrap support for Q759U3 as seed ortholog is 100%.
Bootstrap support for H2XVJ7 as seed ortholog is 100%.

Group of orthologs #1367. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.intestinalis:91

Q759X5              	100.00%		H2Y1V2              	100.00%
Bootstrap support for Q759X5 as seed ortholog is 100%.
Bootstrap support for H2Y1V2 as seed ortholog is 100%.

Group of orthologs #1368. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.intestinalis:90

Q75D70              	100.00%		H2Y3K2              	100.00%
                    	       		F6WHB0              	6.92%
Bootstrap support for Q75D70 as seed ortholog is 100%.
Bootstrap support for H2Y3K2 as seed ortholog is 100%.

Group of orthologs #1369. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.intestinalis:90

Q75BL6              	100.00%		F6TJY9              	100.00%
Bootstrap support for Q75BL6 as seed ortholog is 100%.
Bootstrap support for F6TJY9 as seed ortholog is 100%.

Group of orthologs #1370. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.intestinalis:90

Q75C08              	100.00%		F7AX45              	100.00%
Bootstrap support for Q75C08 as seed ortholog is 100%.
Bootstrap support for F7AX45 as seed ortholog is 100%.

Group of orthologs #1371. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.intestinalis:90

Q757Q1              	100.00%		H2XPD1              	100.00%
Bootstrap support for Q757Q1 as seed ortholog is 100%.
Bootstrap support for H2XPD1 as seed ortholog is 100%.

Group of orthologs #1372. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.intestinalis:89

Q752I9              	100.00%		F6S6I4              	100.00%
                    	       		H2XMQ5              	27.80%
                    	       		F6SPL5              	22.59%
Bootstrap support for Q752I9 as seed ortholog is 100%.
Bootstrap support for F6S6I4 as seed ortholog is 100%.

Group of orthologs #1373. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.intestinalis:89

Q753F1              	100.00%		F6Q4Z2              	100.00%
Bootstrap support for Q753F1 as seed ortholog is 100%.
Bootstrap support for F6Q4Z2 as seed ortholog is 100%.

Group of orthologs #1374. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.intestinalis:19

Q757R0              	100.00%		F6YAM0              	100.00%
Bootstrap support for Q757R0 as seed ortholog is 100%.
Bootstrap support for F6YAM0 as seed ortholog is 60%.
Alternative seed ortholog is F7AEC5 (19 bits away from this cluster)

Group of orthologs #1375. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.intestinalis:89

Q751X8              	100.00%		H2XTC9              	100.00%
Bootstrap support for Q751X8 as seed ortholog is 100%.
Bootstrap support for H2XTC9 as seed ortholog is 100%.

Group of orthologs #1376. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.intestinalis:5

Q75DE5              	100.00%		H2XLJ6              	100.00%
Bootstrap support for Q75DE5 as seed ortholog is 100%.
Bootstrap support for H2XLJ6 as seed ortholog is 46%.
Alternative seed ortholog is F6VH85 (5 bits away from this cluster)

Group of orthologs #1377. Best score 88 bits
Score difference with first non-orthologous sequence - A.gossypii:88 C.intestinalis:88

Q754T8              	100.00%		F6XZJ5              	100.00%
Bootstrap support for Q754T8 as seed ortholog is 100%.
Bootstrap support for F6XZJ5 as seed ortholog is 100%.

Group of orthologs #1378. Best score 88 bits
Score difference with first non-orthologous sequence - A.gossypii:88 C.intestinalis:88

Q75EU5              	100.00%		H2XKA1              	100.00%
Bootstrap support for Q75EU5 as seed ortholog is 100%.
Bootstrap support for H2XKA1 as seed ortholog is 100%.

Group of orthologs #1379. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:11

Q759W0              	100.00%		F6R8N5              	100.00%
                    	       		F6YX18              	12.78%
Bootstrap support for Q759W0 as seed ortholog is 100%.
Bootstrap support for F6R8N5 as seed ortholog is 59%.
Alternative seed ortholog is F6PK93 (11 bits away from this cluster)

Group of orthologs #1380. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:87

Q757G1              	100.00%		F6SD13              	100.00%
Bootstrap support for Q757G1 as seed ortholog is 100%.
Bootstrap support for F6SD13 as seed ortholog is 100%.

Group of orthologs #1381. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:87

Q74ZK2              	100.00%		F6VIZ2              	100.00%
Bootstrap support for Q74ZK2 as seed ortholog is 100%.
Bootstrap support for F6VIZ2 as seed ortholog is 100%.

Group of orthologs #1382. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:87

Q75DK9              	100.00%		F6QTI2              	100.00%
Bootstrap support for Q75DK9 as seed ortholog is 100%.
Bootstrap support for F6QTI2 as seed ortholog is 100%.

Group of orthologs #1383. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:87

Q752E0              	100.00%		F6YGM8              	100.00%
Bootstrap support for Q752E0 as seed ortholog is 100%.
Bootstrap support for F6YGM8 as seed ortholog is 100%.

Group of orthologs #1384. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:87

Q755K0              	100.00%		F6YJB7              	100.00%
Bootstrap support for Q755K0 as seed ortholog is 100%.
Bootstrap support for F6YJB7 as seed ortholog is 100%.

Group of orthologs #1385. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:87

Q753R0              	100.00%		F6ZI65              	100.00%
Bootstrap support for Q753R0 as seed ortholog is 100%.
Bootstrap support for F6ZI65 as seed ortholog is 100%.

Group of orthologs #1386. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:87

Q75AP9              	100.00%		F6XR12              	100.00%
Bootstrap support for Q75AP9 as seed ortholog is 100%.
Bootstrap support for F6XR12 as seed ortholog is 100%.

Group of orthologs #1387. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:87

Q750Y9              	100.00%		F7BNU5              	100.00%
Bootstrap support for Q750Y9 as seed ortholog is 100%.
Bootstrap support for F7BNU5 as seed ortholog is 100%.

Group of orthologs #1388. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:87

Q751G0              	100.00%		H2XP72              	100.00%
Bootstrap support for Q751G0 as seed ortholog is 100%.
Bootstrap support for H2XP72 as seed ortholog is 100%.

Group of orthologs #1389. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:87

Q754L8              	100.00%		H2Y184              	100.00%
Bootstrap support for Q754L8 as seed ortholog is 100%.
Bootstrap support for H2Y184 as seed ortholog is 100%.

Group of orthologs #1390. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.intestinalis:87

Q752J8              	100.00%		Q4H2R5              	100.00%
Bootstrap support for Q752J8 as seed ortholog is 100%.
Bootstrap support for Q4H2R5 as seed ortholog is 100%.

Group of orthologs #1391. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.intestinalis:86

Q75A69              	100.00%		F6Q3E6              	100.00%
Q759B8              	15.34%		
Bootstrap support for Q75A69 as seed ortholog is 100%.
Bootstrap support for F6Q3E6 as seed ortholog is 100%.

Group of orthologs #1392. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.intestinalis:86

D8FGD7              	100.00%		F6Y2U7              	100.00%
Bootstrap support for D8FGD7 as seed ortholog is 100%.
Bootstrap support for F6Y2U7 as seed ortholog is 100%.

Group of orthologs #1393. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.intestinalis:86

Q75DB7              	100.00%		F6WFW0              	100.00%
Bootstrap support for Q75DB7 as seed ortholog is 100%.
Bootstrap support for F6WFW0 as seed ortholog is 100%.

Group of orthologs #1394. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.intestinalis:86

Q758Y2              	100.00%		H2XY20              	100.00%
Bootstrap support for Q758Y2 as seed ortholog is 100%.
Bootstrap support for H2XY20 as seed ortholog is 100%.

Group of orthologs #1395. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.intestinalis:86

Q75EV1              	100.00%		H2XZJ6              	100.00%
Bootstrap support for Q75EV1 as seed ortholog is 100%.
Bootstrap support for H2XZJ6 as seed ortholog is 100%.

Group of orthologs #1396. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.intestinalis:85

Q759H2              	100.00%		F6PHN1              	100.00%
Bootstrap support for Q759H2 as seed ortholog is 100%.
Bootstrap support for F6PHN1 as seed ortholog is 100%.

Group of orthologs #1397. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.intestinalis:85

Q74ZT6              	100.00%		F6WC79              	100.00%
Bootstrap support for Q74ZT6 as seed ortholog is 100%.
Bootstrap support for F6WC79 as seed ortholog is 100%.

Group of orthologs #1398. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.intestinalis:85

Q752U9              	100.00%		H2XUK0              	100.00%
Bootstrap support for Q752U9 as seed ortholog is 100%.
Bootstrap support for H2XUK0 as seed ortholog is 100%.

Group of orthologs #1399. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.intestinalis:85

Q754N3              	100.00%		H2XVT6              	100.00%
Bootstrap support for Q754N3 as seed ortholog is 100%.
Bootstrap support for H2XVT6 as seed ortholog is 100%.

Group of orthologs #1400. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.intestinalis:85

Q754N1              	100.00%		Q1RL87              	100.00%
Bootstrap support for Q754N1 as seed ortholog is 100%.
Bootstrap support for Q1RL87 as seed ortholog is 100%.

Group of orthologs #1401. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.intestinalis:84

Q75DH3              	100.00%		H2XYY3              	100.00%
                    	       		F6YVH4              	25.29%
                    	       		H2Y0X8              	22.89%
                    	       		F6TL65              	9.89%
                    	       		F6TS80              	9.57%
                    	       		H2Y2D9              	9.57%
                    	       		F7B9K0              	9.47%
                    	       		F6QC31              	8.95%
                    	       		F7BB38              	8.43%
                    	       		F6WRT4              	8.01%
                    	       		F6RLR6              	7.91%
                    	       		F6TL47              	7.91%
                    	       		F6WNP2              	7.80%
                    	       		F6ZNW9              	7.70%
                    	       		F6PUR6              	7.60%
                    	       		F6ZC68              	7.60%
                    	       		H2XMC8              	7.49%
                    	       		F7A0M9              	6.87%
                    	       		H2XRT7              	6.87%
                    	       		F6THU3              	6.76%
                    	       		H2XXR0              	6.76%
                    	       		F6UFN6              	6.66%
                    	       		F6W8H6              	6.66%
                    	       		F6VYD7              	6.56%
                    	       		H2XW47              	6.45%
                    	       		H2XJM1              	6.45%
                    	       		F6TF08              	6.35%
                    	       		H2Y3A4              	6.14%
                    	       		F6PLM8              	6.04%
                    	       		F6U9J6              	6.04%
                    	       		F6ZI41              	6.04%
                    	       		H2Y171              	5.93%
                    	       		H2XVS1              	5.62%
                    	       		F7AR76              	5.20%
                    	       		F7A8I5              	5.10%
                    	       		L7N0S0              	5.10%
Bootstrap support for Q75DH3 as seed ortholog is 100%.
Bootstrap support for H2XYY3 as seed ortholog is 100%.

Group of orthologs #1402. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.intestinalis:18

Q759C2              	100.00%		H2XTL6              	100.00%
                    	       		F7A7X6              	5.49%
Bootstrap support for Q759C2 as seed ortholog is 100%.
Bootstrap support for H2XTL6 as seed ortholog is 86%.

Group of orthologs #1403. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.intestinalis:84

Q754S0              	100.00%		F6PRZ9              	100.00%
Bootstrap support for Q754S0 as seed ortholog is 100%.
Bootstrap support for F6PRZ9 as seed ortholog is 100%.

Group of orthologs #1404. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.intestinalis:84

Q751H9              	100.00%		F6TUV6              	100.00%
Bootstrap support for Q751H9 as seed ortholog is 100%.
Bootstrap support for F6TUV6 as seed ortholog is 100%.

Group of orthologs #1405. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.intestinalis:84

Q75AZ8              	100.00%		F6SQE9              	100.00%
Bootstrap support for Q75AZ8 as seed ortholog is 100%.
Bootstrap support for F6SQE9 as seed ortholog is 100%.

Group of orthologs #1406. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.intestinalis:84

Q75EX0              	100.00%		F6RMT1              	100.00%
Bootstrap support for Q75EX0 as seed ortholog is 100%.
Bootstrap support for F6RMT1 as seed ortholog is 100%.

Group of orthologs #1407. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.intestinalis:84

Q75AN6              	100.00%		F6Z5W5              	100.00%
Bootstrap support for Q75AN6 as seed ortholog is 100%.
Bootstrap support for F6Z5W5 as seed ortholog is 100%.

Group of orthologs #1408. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.intestinalis:84

Q750B2              	100.00%		H2XZ67              	100.00%
Bootstrap support for Q750B2 as seed ortholog is 100%.
Bootstrap support for H2XZ67 as seed ortholog is 100%.

Group of orthologs #1409. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 C.intestinalis:83

Q75CH5              	100.00%		F6UW27              	100.00%
Bootstrap support for Q75CH5 as seed ortholog is 100%.
Bootstrap support for F6UW27 as seed ortholog is 100%.

Group of orthologs #1410. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 C.intestinalis:83

Q756J2              	100.00%		F7AA18              	100.00%
Bootstrap support for Q756J2 as seed ortholog is 100%.
Bootstrap support for F7AA18 as seed ortholog is 100%.

Group of orthologs #1411. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 C.intestinalis:10

Q754S1              	100.00%		F7BGY2              	100.00%
Bootstrap support for Q754S1 as seed ortholog is 100%.
Bootstrap support for F7BGY2 as seed ortholog is 62%.
Alternative seed ortholog is F6TX70 (10 bits away from this cluster)

Group of orthologs #1412. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 C.intestinalis:83

Q75EE8              	100.00%		F7AER5              	100.00%
Bootstrap support for Q75EE8 as seed ortholog is 100%.
Bootstrap support for F7AER5 as seed ortholog is 100%.

Group of orthologs #1413. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 C.intestinalis:83

Q751A2              	100.00%		H2XWN4              	100.00%
Bootstrap support for Q751A2 as seed ortholog is 100%.
Bootstrap support for H2XWN4 as seed ortholog is 100%.

Group of orthologs #1414. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 C.intestinalis:83

Q74ZR8              	100.00%		H2Y0C3              	100.00%
Bootstrap support for Q74ZR8 as seed ortholog is 100%.
Bootstrap support for H2Y0C3 as seed ortholog is 100%.

Group of orthologs #1415. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.intestinalis:82

Q75C22              	100.00%		F6YTT5              	100.00%
                    	       		H2XVF4              	13.72%
Bootstrap support for Q75C22 as seed ortholog is 100%.
Bootstrap support for F6YTT5 as seed ortholog is 100%.

Group of orthologs #1416. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.intestinalis:82

Q75B38              	100.00%		F6U5E5              	100.00%
Bootstrap support for Q75B38 as seed ortholog is 100%.
Bootstrap support for F6U5E5 as seed ortholog is 100%.

Group of orthologs #1417. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.intestinalis:82

Q75E80              	100.00%		F6TDH1              	100.00%
Bootstrap support for Q75E80 as seed ortholog is 100%.
Bootstrap support for F6TDH1 as seed ortholog is 100%.

Group of orthologs #1418. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.intestinalis:82

Q74ZL2              	100.00%		F6ZFZ3              	100.00%
Bootstrap support for Q74ZL2 as seed ortholog is 100%.
Bootstrap support for F6ZFZ3 as seed ortholog is 100%.

Group of orthologs #1419. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.intestinalis:82

Q755N8              	100.00%		F7BBF0              	100.00%
Bootstrap support for Q755N8 as seed ortholog is 100%.
Bootstrap support for F7BBF0 as seed ortholog is 100%.

Group of orthologs #1420. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.intestinalis:82

Q75AY0              	100.00%		H2XZI3              	100.00%
Bootstrap support for Q75AY0 as seed ortholog is 100%.
Bootstrap support for H2XZI3 as seed ortholog is 100%.

Group of orthologs #1421. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.intestinalis:82

Q75EZ2              	100.00%		H2XXU4              	100.00%
Bootstrap support for Q75EZ2 as seed ortholog is 100%.
Bootstrap support for H2XXU4 as seed ortholog is 100%.

Group of orthologs #1422. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:6 C.intestinalis:81

Q751A6              	100.00%		F6S2Y7              	100.00%
Bootstrap support for Q751A6 as seed ortholog is 62%.
Alternative seed ortholog is Q75EK4 (6 bits away from this cluster)
Bootstrap support for F6S2Y7 as seed ortholog is 100%.

Group of orthologs #1423. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.intestinalis:81

Q75AY2              	100.00%		F6SN53              	100.00%
Bootstrap support for Q75AY2 as seed ortholog is 100%.
Bootstrap support for F6SN53 as seed ortholog is 100%.

Group of orthologs #1424. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.intestinalis:81

Q758D8              	100.00%		F6WZ37              	100.00%
Bootstrap support for Q758D8 as seed ortholog is 100%.
Bootstrap support for F6WZ37 as seed ortholog is 100%.

Group of orthologs #1425. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.intestinalis:81

Q74ZP5              	100.00%		H2XKF1              	100.00%
Bootstrap support for Q74ZP5 as seed ortholog is 100%.
Bootstrap support for H2XKF1 as seed ortholog is 100%.

Group of orthologs #1426. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.intestinalis:81

Q759K1              	100.00%		F7BPM3              	100.00%
Bootstrap support for Q759K1 as seed ortholog is 100%.
Bootstrap support for F7BPM3 as seed ortholog is 100%.

Group of orthologs #1427. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.intestinalis:81

Q75CV4              	100.00%		H2XVM5              	100.00%
Bootstrap support for Q75CV4 as seed ortholog is 100%.
Bootstrap support for H2XVM5 as seed ortholog is 100%.

Group of orthologs #1428. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:80 C.intestinalis:80

Q75A92              	100.00%		F6RGJ1              	100.00%
                    	       		F7A1W8              	5.46%
Bootstrap support for Q75A92 as seed ortholog is 100%.
Bootstrap support for F6RGJ1 as seed ortholog is 100%.

Group of orthologs #1429. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:80 C.intestinalis:80

Q755Q3              	100.00%		F6WJ25              	100.00%
Bootstrap support for Q755Q3 as seed ortholog is 100%.
Bootstrap support for F6WJ25 as seed ortholog is 100%.

Group of orthologs #1430. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:34 C.intestinalis:80

Q755V5              	100.00%		F7AM61              	100.00%
Bootstrap support for Q755V5 as seed ortholog is 75%.
Bootstrap support for F7AM61 as seed ortholog is 100%.

Group of orthologs #1431. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:80 C.intestinalis:80

Q753F8              	100.00%		H2XSS0              	100.00%
Bootstrap support for Q753F8 as seed ortholog is 100%.
Bootstrap support for H2XSS0 as seed ortholog is 100%.

Group of orthologs #1432. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:80 C.intestinalis:80

Q75AI5              	100.00%		H2Y1A3              	100.00%
Bootstrap support for Q75AI5 as seed ortholog is 100%.
Bootstrap support for H2Y1A3 as seed ortholog is 100%.

Group of orthologs #1433. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:80 C.intestinalis:80

Q75E92              	100.00%		H2XZ76              	100.00%
Bootstrap support for Q75E92 as seed ortholog is 100%.
Bootstrap support for H2XZ76 as seed ortholog is 100%.

Group of orthologs #1434. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:20

Q753Q9              	100.00%		H2XVE2              	100.00%
                    	       		H2Y2K3              	47.62%
                    	       		H2Y0Z7              	45.93%
                    	       		H2XPY7              	39.05%
                    	       		F6RBM9              	7.41%
                    	       		F6T5A7              	7.41%
                    	       		F6RS86              	6.77%
                    	       		F7ARF4              	6.56%
                    	       		F6RID1              	6.35%
                    	       		F7BI82              	6.14%
                    	       		H2Y3F7              	5.29%
Bootstrap support for Q753Q9 as seed ortholog is 100%.
Bootstrap support for H2XVE2 as seed ortholog is 65%.
Alternative seed ortholog is F6Z1X8 (20 bits away from this cluster)

Group of orthologs #1435. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:79

Q751X5              	100.00%		F7AQR7              	100.00%
Q75FB0              	5.81%		
Bootstrap support for Q751X5 as seed ortholog is 100%.
Bootstrap support for F7AQR7 as seed ortholog is 100%.

Group of orthologs #1436. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:39

Q750D9              	100.00%		F6U3H2              	100.00%
Bootstrap support for Q750D9 as seed ortholog is 100%.
Bootstrap support for F6U3H2 as seed ortholog is 85%.

Group of orthologs #1437. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:79

Q753Q5              	100.00%		F6UU76              	100.00%
Bootstrap support for Q753Q5 as seed ortholog is 100%.
Bootstrap support for F6UU76 as seed ortholog is 100%.

Group of orthologs #1438. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:79

Q75EI7              	100.00%		F6S5D5              	100.00%
Bootstrap support for Q75EI7 as seed ortholog is 100%.
Bootstrap support for F6S5D5 as seed ortholog is 100%.

Group of orthologs #1439. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:79

Q75AB4              	100.00%		F7APT3              	100.00%
Bootstrap support for Q75AB4 as seed ortholog is 100%.
Bootstrap support for F7APT3 as seed ortholog is 100%.

Group of orthologs #1440. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:79

Q75AP5              	100.00%		H2XKD8              	100.00%
Bootstrap support for Q75AP5 as seed ortholog is 100%.
Bootstrap support for H2XKD8 as seed ortholog is 100%.

Group of orthologs #1441. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:79

E7FHS1              	100.00%		H2XVS6              	100.00%
Bootstrap support for E7FHS1 as seed ortholog is 100%.
Bootstrap support for H2XVS6 as seed ortholog is 100%.

Group of orthologs #1442. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:79

Q75EU1              	100.00%		H2XP92              	100.00%
Bootstrap support for Q75EU1 as seed ortholog is 100%.
Bootstrap support for H2XP92 as seed ortholog is 100%.

Group of orthologs #1443. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.intestinalis:79

Q75DI1              	100.00%		H2XRS4              	100.00%
Bootstrap support for Q75DI1 as seed ortholog is 100%.
Bootstrap support for H2XRS4 as seed ortholog is 100%.

Group of orthologs #1444. Best score 78 bits
Score difference with first non-orthologous sequence - A.gossypii:78 C.intestinalis:78

Q75DV6              	100.00%		F6QFA2              	100.00%
Bootstrap support for Q75DV6 as seed ortholog is 100%.
Bootstrap support for F6QFA2 as seed ortholog is 100%.

Group of orthologs #1445. Best score 78 bits
Score difference with first non-orthologous sequence - A.gossypii:78 C.intestinalis:78

Q756Q4              	100.00%		F7ARN8              	100.00%
Bootstrap support for Q756Q4 as seed ortholog is 100%.
Bootstrap support for F7ARN8 as seed ortholog is 100%.

Group of orthologs #1446. Best score 78 bits
Score difference with first non-orthologous sequence - A.gossypii:36 C.intestinalis:78

Q759W7              	100.00%		H2XZW2              	100.00%
Bootstrap support for Q759W7 as seed ortholog is 99%.
Bootstrap support for H2XZW2 as seed ortholog is 100%.

Group of orthologs #1447. Best score 78 bits
Score difference with first non-orthologous sequence - A.gossypii:78 C.intestinalis:78

Q75CN1              	100.00%		H2Y013              	100.00%
Bootstrap support for Q75CN1 as seed ortholog is 100%.
Bootstrap support for H2Y013 as seed ortholog is 100%.

Group of orthologs #1448. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.intestinalis:77

Q75C90              	100.00%		F6SN27              	100.00%
Bootstrap support for Q75C90 as seed ortholog is 100%.
Bootstrap support for F6SN27 as seed ortholog is 100%.

Group of orthologs #1449. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.intestinalis:35

Q75EP4              	100.00%		F6U3C1              	100.00%
Bootstrap support for Q75EP4 as seed ortholog is 100%.
Bootstrap support for F6U3C1 as seed ortholog is 88%.

Group of orthologs #1450. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.intestinalis:77

Q75EY3              	100.00%		F6VLH4              	100.00%
Bootstrap support for Q75EY3 as seed ortholog is 100%.
Bootstrap support for F6VLH4 as seed ortholog is 100%.

Group of orthologs #1451. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.intestinalis:77

Q75DN6              	100.00%		F6XKZ6              	100.00%
Bootstrap support for Q75DN6 as seed ortholog is 100%.
Bootstrap support for F6XKZ6 as seed ortholog is 100%.

Group of orthologs #1452. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.intestinalis:77

Q751X1              	100.00%		H2XQR9              	100.00%
Bootstrap support for Q751X1 as seed ortholog is 100%.
Bootstrap support for H2XQR9 as seed ortholog is 100%.

Group of orthologs #1453. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.intestinalis:77

Q75DF9              	100.00%		H2XYD5              	100.00%
Bootstrap support for Q75DF9 as seed ortholog is 100%.
Bootstrap support for H2XYD5 as seed ortholog is 100%.

Group of orthologs #1454. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:9 C.intestinalis:12

Q759U0              	100.00%		F6VCD8              	100.00%
                    	       		F6SGH3              	36.65%
                    	       		F6X9C7              	16.50%
                    	       		H2XPK9              	15.29%
                    	       		H2XY34              	13.35%
                    	       		F6Y7T8              	12.14%
Bootstrap support for Q759U0 as seed ortholog is 57%.
Alternative seed ortholog is Q75EU7 (9 bits away from this cluster)
Bootstrap support for F6VCD8 as seed ortholog is 76%.

Group of orthologs #1455. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:76

Q758W9              	100.00%		F7A7T2              	100.00%
                    	       		F6V2S0              	16.30%
                    	       		H2XQR2              	12.85%
                    	       		F6XVZ5              	12.54%
                    	       		F6SZN1              	10.03%
                    	       		F6Y516              	6.90%
Bootstrap support for Q758W9 as seed ortholog is 100%.
Bootstrap support for F7A7T2 as seed ortholog is 100%.

Group of orthologs #1456. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:76

Q75E07              	100.00%		F6TNN9              	100.00%
                    	       		F6Z145              	18.99%
                    	       		F6QZW1              	9.08%
                    	       		F6XGK4              	7.40%
Bootstrap support for Q75E07 as seed ortholog is 100%.
Bootstrap support for F6TNN9 as seed ortholog is 100%.

Group of orthologs #1457. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:34 C.intestinalis:76

Q751W5              	100.00%		H2XT36              	100.00%
                    	       		F7AK54              	17.65%
                    	       		H2XZE7              	11.76%
Bootstrap support for Q751W5 as seed ortholog is 94%.
Bootstrap support for H2XT36 as seed ortholog is 100%.

Group of orthologs #1458. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:76

Q750M4              	100.00%		F6RRS1              	100.00%
Bootstrap support for Q750M4 as seed ortholog is 100%.
Bootstrap support for F6RRS1 as seed ortholog is 100%.

Group of orthologs #1459. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:76

Q75CR5              	100.00%		F6SAX1              	100.00%
Bootstrap support for Q75CR5 as seed ortholog is 100%.
Bootstrap support for F6SAX1 as seed ortholog is 100%.

Group of orthologs #1460. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:76

Q752N1              	100.00%		F6XWH9              	100.00%
Bootstrap support for Q752N1 as seed ortholog is 100%.
Bootstrap support for F6XWH9 as seed ortholog is 100%.

Group of orthologs #1461. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:76

Q75EH4              	100.00%		F6ZF56              	100.00%
Bootstrap support for Q75EH4 as seed ortholog is 100%.
Bootstrap support for F6ZF56 as seed ortholog is 100%.

Group of orthologs #1462. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:76

Q75E17              	100.00%		F7AUH4              	100.00%
Bootstrap support for Q75E17 as seed ortholog is 100%.
Bootstrap support for F7AUH4 as seed ortholog is 100%.

Group of orthologs #1463. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:76

Q75A50              	100.00%		H2XL84              	100.00%
Bootstrap support for Q75A50 as seed ortholog is 100%.
Bootstrap support for H2XL84 as seed ortholog is 100%.

Group of orthologs #1464. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.intestinalis:76

Q753B0              	100.00%		Q4H2N1              	100.00%
Bootstrap support for Q753B0 as seed ortholog is 100%.
Bootstrap support for Q4H2N1 as seed ortholog is 100%.

Group of orthologs #1465. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:18 C.intestinalis:76

Q755N3              	100.00%		Q4H3E0              	100.00%
Bootstrap support for Q755N3 as seed ortholog is 87%.
Bootstrap support for Q4H3E0 as seed ortholog is 100%.

Group of orthologs #1466. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 C.intestinalis:75

Q752P6              	100.00%		F6QLU5              	100.00%
Bootstrap support for Q752P6 as seed ortholog is 100%.
Bootstrap support for F6QLU5 as seed ortholog is 100%.

Group of orthologs #1467. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:13 C.intestinalis:75

Q75DR5              	100.00%		F6X9U7              	100.00%
Bootstrap support for Q75DR5 as seed ortholog is 55%.
Alternative seed ortholog is Q75AB0 (13 bits away from this cluster)
Bootstrap support for F6X9U7 as seed ortholog is 100%.

Group of orthologs #1468. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 C.intestinalis:13

Q75BV5              	100.00%		F6ZHD7              	100.00%
Bootstrap support for Q75BV5 as seed ortholog is 100%.
Bootstrap support for F6ZHD7 as seed ortholog is 56%.
Alternative seed ortholog is H2XPM6 (13 bits away from this cluster)

Group of orthologs #1469. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.intestinalis:74

Q75DS3              	100.00%		F6PHZ4              	100.00%
Bootstrap support for Q75DS3 as seed ortholog is 100%.
Bootstrap support for F6PHZ4 as seed ortholog is 100%.

Group of orthologs #1470. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.intestinalis:74

Q75A81              	100.00%		F6U8F3              	100.00%
Bootstrap support for Q75A81 as seed ortholog is 100%.
Bootstrap support for F6U8F3 as seed ortholog is 100%.

Group of orthologs #1471. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.intestinalis:74

Q756A6              	100.00%		F6X915              	100.00%
Bootstrap support for Q756A6 as seed ortholog is 100%.
Bootstrap support for F6X915 as seed ortholog is 100%.

Group of orthologs #1472. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.intestinalis:74

Q75EH6              	100.00%		F6V4K8              	100.00%
Bootstrap support for Q75EH6 as seed ortholog is 100%.
Bootstrap support for F6V4K8 as seed ortholog is 100%.

Group of orthologs #1473. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.intestinalis:74

Q751R1              	100.00%		H2XPG9              	100.00%
Bootstrap support for Q751R1 as seed ortholog is 100%.
Bootstrap support for H2XPG9 as seed ortholog is 100%.

Group of orthologs #1474. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.intestinalis:74

Q75AU9              	100.00%		F7BEP5              	100.00%
Bootstrap support for Q75AU9 as seed ortholog is 100%.
Bootstrap support for F7BEP5 as seed ortholog is 100%.

Group of orthologs #1475. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.intestinalis:74

Q75BP2              	100.00%		H2Y2U3              	100.00%
Bootstrap support for Q75BP2 as seed ortholog is 100%.
Bootstrap support for H2Y2U3 as seed ortholog is 100%.

Group of orthologs #1476. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.intestinalis:73

Q75CQ4              	100.00%		F6XYT3              	100.00%
Q750B7              	100.00%		H2Y1L4              	100.00%
Q751X7              	49.91%		F6YP51              	43.34%
Q750B8              	48.98%		F6XYD9              	41.16%
Q750B9              	48.79%		F7AQC2              	32.85%
Q75B49              	36.36%		F7A6E1              	30.69%
Q753U5              	34.97%		
Q74Z84              	34.88%		
Q757P2              	32.37%		
Q755W3              	29.78%		
Q754B4              	25.92%		
Q752A8              	24.66%		
Q752A7              	23.86%		
Q75EP1              	17.58%		
Q750W0              	14.26%		
Bootstrap support for Q75CQ4 as seed ortholog is 100%.
Bootstrap support for Q750B7 as seed ortholog is 100%.
Bootstrap support for F6XYT3 as seed ortholog is 100%.
Bootstrap support for H2Y1L4 as seed ortholog is 100%.

Group of orthologs #1477. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.intestinalis:73

Q75AS6              	100.00%		F6ZST9              	100.00%
Q75AS5              	61.21%		F6WJT4              	13.03%
Q75AL8              	26.15%		F6Y782              	10.68%
                    	       		F6VN69              	6.86%
                    	       		F6ZCN2              	6.56%
                    	       		H2XVY9              	5.97%
                    	       		H2XV23              	5.19%
                    	       		F7AXQ6              	5.09%
Bootstrap support for Q75AS6 as seed ortholog is 100%.
Bootstrap support for F6ZST9 as seed ortholog is 100%.

Group of orthologs #1478. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.intestinalis:73

Q753P5              	100.00%		F6SJ18              	100.00%
Bootstrap support for Q753P5 as seed ortholog is 100%.
Bootstrap support for F6SJ18 as seed ortholog is 100%.

Group of orthologs #1479. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.intestinalis:73

Q74ZD2              	100.00%		F6VLD0              	100.00%
Bootstrap support for Q74ZD2 as seed ortholog is 100%.
Bootstrap support for F6VLD0 as seed ortholog is 100%.

Group of orthologs #1480. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.intestinalis:1

Q759F9              	100.00%		H2XJU0              	100.00%
                    	       		F6U3T3              	26.89%
Bootstrap support for Q759F9 as seed ortholog is 100%.
Bootstrap support for H2XJU0 as seed ortholog is 61%.
Alternative seed ortholog is H2XVF8 (1 bits away from this cluster)

Group of orthologs #1481. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.intestinalis:72

Q750U3              	100.00%		F6Q558              	100.00%
Bootstrap support for Q750U3 as seed ortholog is 100%.
Bootstrap support for F6Q558 as seed ortholog is 100%.

Group of orthologs #1482. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.intestinalis:72

Q74Z25              	100.00%		F6R4A6              	100.00%
Bootstrap support for Q74Z25 as seed ortholog is 100%.
Bootstrap support for F6R4A6 as seed ortholog is 100%.

Group of orthologs #1483. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.intestinalis:72

Q75CZ8              	100.00%		F6TJA4              	100.00%
Bootstrap support for Q75CZ8 as seed ortholog is 100%.
Bootstrap support for F6TJA4 as seed ortholog is 100%.

Group of orthologs #1484. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.intestinalis:72

Q75C25              	100.00%		F6Y3U3              	100.00%
Bootstrap support for Q75C25 as seed ortholog is 100%.
Bootstrap support for F6Y3U3 as seed ortholog is 100%.

Group of orthologs #1485. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:20 C.intestinalis:72

Q75CP9              	100.00%		F6ZBF1              	100.00%
Bootstrap support for Q75CP9 as seed ortholog is 72%.
Alternative seed ortholog is Q75EV3 (20 bits away from this cluster)
Bootstrap support for F6ZBF1 as seed ortholog is 100%.

Group of orthologs #1486. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.intestinalis:22

Q75AA5              	100.00%		H2XJX4              	100.00%
Bootstrap support for Q75AA5 as seed ortholog is 100%.
Bootstrap support for H2XJX4 as seed ortholog is 87%.

Group of orthologs #1487. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.intestinalis:72

Q75EX4              	100.00%		H2XK95              	100.00%
Bootstrap support for Q75EX4 as seed ortholog is 100%.
Bootstrap support for H2XK95 as seed ortholog is 100%.

Group of orthologs #1488. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:22 C.intestinalis:72

Q756P9              	100.00%		H2XZL8              	100.00%
Bootstrap support for Q756P9 as seed ortholog is 90%.
Bootstrap support for H2XZL8 as seed ortholog is 100%.

Group of orthologs #1489. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.intestinalis:71

Q755M7              	100.00%		F6U1L2              	100.00%
                    	       		H2XK60              	25.90%
                    	       		F6YKT9              	20.85%
                    	       		F6UHT2              	18.33%
                    	       		F7ADR7              	18.06%
                    	       		F6Q106              	12.88%
Bootstrap support for Q755M7 as seed ortholog is 100%.
Bootstrap support for F6U1L2 as seed ortholog is 100%.

Group of orthologs #1490. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.intestinalis:71

Q752B9              	100.00%		F6TBB0              	100.00%
Bootstrap support for Q752B9 as seed ortholog is 100%.
Bootstrap support for F6TBB0 as seed ortholog is 100%.

Group of orthologs #1491. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.intestinalis:71

Q75CK7              	100.00%		F6R9S1              	100.00%
Bootstrap support for Q75CK7 as seed ortholog is 100%.
Bootstrap support for F6R9S1 as seed ortholog is 100%.

Group of orthologs #1492. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:2 C.intestinalis:2

Q755G2              	100.00%		F6Y3T4              	100.00%
Bootstrap support for Q755G2 as seed ortholog is 48%.
Alternative seed ortholog is Q755P5 (2 bits away from this cluster)
Bootstrap support for F6Y3T4 as seed ortholog is 49%.
Alternative seed ortholog is F6Y321 (2 bits away from this cluster)

Group of orthologs #1493. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.intestinalis:71

Q754J4              	100.00%		H2XM22              	100.00%
Bootstrap support for Q754J4 as seed ortholog is 100%.
Bootstrap support for H2XM22 as seed ortholog is 100%.

Group of orthologs #1494. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.intestinalis:71

Q759X3              	100.00%		H2XR59              	100.00%
Bootstrap support for Q759X3 as seed ortholog is 100%.
Bootstrap support for H2XR59 as seed ortholog is 100%.

Group of orthologs #1495. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.intestinalis:71

Q752W4              	100.00%		H2Y2A0              	100.00%
Bootstrap support for Q752W4 as seed ortholog is 100%.
Bootstrap support for H2Y2A0 as seed ortholog is 100%.

Group of orthologs #1496. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.intestinalis:70

Q750J3              	100.00%		F6ZVS4              	100.00%
                    	       		F6UWB9              	40.87%
Bootstrap support for Q750J3 as seed ortholog is 100%.
Bootstrap support for F6ZVS4 as seed ortholog is 100%.

Group of orthologs #1497. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.intestinalis:70

Q757P5              	100.00%		F6Y043              	100.00%
Bootstrap support for Q757P5 as seed ortholog is 100%.
Bootstrap support for F6Y043 as seed ortholog is 100%.

Group of orthologs #1498. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.intestinalis:70

Q756B6              	100.00%		F7AD29              	100.00%
Bootstrap support for Q756B6 as seed ortholog is 100%.
Bootstrap support for F7AD29 as seed ortholog is 100%.

Group of orthologs #1499. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.intestinalis:70

Q75A93              	100.00%		F7BDK3              	100.00%
Bootstrap support for Q75A93 as seed ortholog is 100%.
Bootstrap support for F7BDK3 as seed ortholog is 100%.

Group of orthologs #1500. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.intestinalis:70

Q74Z47              	100.00%		H2XX64              	100.00%
Bootstrap support for Q74Z47 as seed ortholog is 100%.
Bootstrap support for H2XX64 as seed ortholog is 100%.

Group of orthologs #1501. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.intestinalis:70

Q75D53              	100.00%		H2XS17              	100.00%
Bootstrap support for Q75D53 as seed ortholog is 100%.
Bootstrap support for H2XS17 as seed ortholog is 100%.

Group of orthologs #1502. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.intestinalis:69

Q750U7              	100.00%		F6Q8U3              	100.00%
Bootstrap support for Q750U7 as seed ortholog is 100%.
Bootstrap support for F6Q8U3 as seed ortholog is 100%.

Group of orthologs #1503. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.intestinalis:69

Q751F9              	100.00%		F6QGB8              	100.00%
Bootstrap support for Q751F9 as seed ortholog is 100%.
Bootstrap support for F6QGB8 as seed ortholog is 100%.

Group of orthologs #1504. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.intestinalis:69

Q74ZZ0              	100.00%		F6VUS5              	100.00%
Bootstrap support for Q74ZZ0 as seed ortholog is 100%.
Bootstrap support for F6VUS5 as seed ortholog is 100%.

Group of orthologs #1505. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.intestinalis:69

Q75CC8              	100.00%		F6VAW2              	100.00%
Bootstrap support for Q75CC8 as seed ortholog is 100%.
Bootstrap support for F6VAW2 as seed ortholog is 100%.

Group of orthologs #1506. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.intestinalis:69

Q758A0              	100.00%		F6XCL4              	100.00%
Bootstrap support for Q758A0 as seed ortholog is 100%.
Bootstrap support for F6XCL4 as seed ortholog is 100%.

Group of orthologs #1507. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.intestinalis:69

Q759Q9              	100.00%		F6X034              	100.00%
Bootstrap support for Q759Q9 as seed ortholog is 100%.
Bootstrap support for F6X034 as seed ortholog is 100%.

Group of orthologs #1508. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.intestinalis:69

Q75A96              	100.00%		F6YAY9              	100.00%
Bootstrap support for Q75A96 as seed ortholog is 100%.
Bootstrap support for F6YAY9 as seed ortholog is 100%.

Group of orthologs #1509. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.intestinalis:68

Q75BL2              	100.00%		F6WV27              	100.00%
                    	       		F6WVN4              	7.45%
Bootstrap support for Q75BL2 as seed ortholog is 100%.
Bootstrap support for F6WV27 as seed ortholog is 100%.

Group of orthologs #1510. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.intestinalis:68

Q752S1              	100.00%		F6SEF1              	100.00%
Bootstrap support for Q752S1 as seed ortholog is 100%.
Bootstrap support for F6SEF1 as seed ortholog is 100%.

Group of orthologs #1511. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.intestinalis:6

Q755J1              	100.00%		F6Z6E4              	100.00%
Bootstrap support for Q755J1 as seed ortholog is 100%.
Bootstrap support for F6Z6E4 as seed ortholog is 42%.
Alternative seed ortholog is F7BGS1 (6 bits away from this cluster)

Group of orthologs #1512. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.intestinalis:68

Q75F32              	100.00%		F6ZBK7              	100.00%
Bootstrap support for Q75F32 as seed ortholog is 100%.
Bootstrap support for F6ZBK7 as seed ortholog is 100%.

Group of orthologs #1513. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.intestinalis:16

Q75AY7              	100.00%		F7AX97              	100.00%
Bootstrap support for Q75AY7 as seed ortholog is 100%.
Bootstrap support for F7AX97 as seed ortholog is 64%.
Alternative seed ortholog is H2XXR6 (16 bits away from this cluster)

Group of orthologs #1514. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.intestinalis:68

Q752T0              	100.00%		H2XV35              	100.00%
Bootstrap support for Q752T0 as seed ortholog is 100%.
Bootstrap support for H2XV35 as seed ortholog is 100%.

Group of orthologs #1515. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:23

Q74ZB6              	100.00%		F6XBY1              	100.00%
                    	       		F7A8X9              	14.25%
                    	       		H2XVL0              	5.59%
Bootstrap support for Q74ZB6 as seed ortholog is 100%.
Bootstrap support for F6XBY1 as seed ortholog is 77%.

Group of orthologs #1516. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:67

Q75AK0              	100.00%		F6T4U7              	100.00%
                    	       		F6ZUV3              	34.17%
Bootstrap support for Q75AK0 as seed ortholog is 100%.
Bootstrap support for F6T4U7 as seed ortholog is 100%.

Group of orthologs #1517. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:67

Q75DI2              	100.00%		F6YFU4              	100.00%
                    	       		F6YFZ5              	61.50%
Bootstrap support for Q75DI2 as seed ortholog is 100%.
Bootstrap support for F6YFU4 as seed ortholog is 100%.

Group of orthologs #1518. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:67

Q753T9              	100.00%		F6THW7              	100.00%
Bootstrap support for Q753T9 as seed ortholog is 100%.
Bootstrap support for F6THW7 as seed ortholog is 100%.

Group of orthologs #1519. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:67

Q75AL0              	100.00%		F6R6V8              	100.00%
Bootstrap support for Q75AL0 as seed ortholog is 100%.
Bootstrap support for F6R6V8 as seed ortholog is 100%.

Group of orthologs #1520. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:67

Q75BC8              	100.00%		F6QYL2              	100.00%
Bootstrap support for Q75BC8 as seed ortholog is 100%.
Bootstrap support for F6QYL2 as seed ortholog is 100%.

Group of orthologs #1521. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:67

Q756U1              	100.00%		F6TPM4              	100.00%
Bootstrap support for Q756U1 as seed ortholog is 100%.
Bootstrap support for F6TPM4 as seed ortholog is 100%.

Group of orthologs #1522. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:67

Q75AI7              	100.00%		F6TVK0              	100.00%
Bootstrap support for Q75AI7 as seed ortholog is 100%.
Bootstrap support for F6TVK0 as seed ortholog is 100%.

Group of orthologs #1523. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:67

Q74Z33              	100.00%		F6XWK4              	100.00%
Bootstrap support for Q74Z33 as seed ortholog is 100%.
Bootstrap support for F6XWK4 as seed ortholog is 100%.

Group of orthologs #1524. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:67

Q75BB4              	100.00%		F7ATY3              	100.00%
Bootstrap support for Q75BB4 as seed ortholog is 100%.
Bootstrap support for F7ATY3 as seed ortholog is 100%.

Group of orthologs #1525. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:67

Q75B09              	100.00%		H2XT41              	100.00%
Bootstrap support for Q75B09 as seed ortholog is 100%.
Bootstrap support for H2XT41 as seed ortholog is 100%.

Group of orthologs #1526. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.intestinalis:67

Q752S2              	100.00%		H2Y1B5              	100.00%
Bootstrap support for Q752S2 as seed ortholog is 100%.
Bootstrap support for H2Y1B5 as seed ortholog is 100%.

Group of orthologs #1527. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.intestinalis:66

Q8NJR2              	100.00%		F6RAJ1              	100.00%
                    	       		F6Z8B6              	20.00%
                    	       		F6WRW7              	18.00%
                    	       		F7AE92              	17.33%
                    	       		F7B3N6              	15.78%
                    	       		F6XUL4              	10.67%
Bootstrap support for Q8NJR2 as seed ortholog is 100%.
Bootstrap support for F6RAJ1 as seed ortholog is 100%.

Group of orthologs #1528. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.intestinalis:66

Q753B4              	100.00%		F6XC87              	100.00%
Q75DZ8              	26.51%		
Bootstrap support for Q753B4 as seed ortholog is 100%.
Bootstrap support for F6XC87 as seed ortholog is 100%.

Group of orthologs #1529. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.intestinalis:66

Q75AV5              	100.00%		F6UQX1              	100.00%
                    	       		H2XKI3              	6.92%
Bootstrap support for Q75AV5 as seed ortholog is 100%.
Bootstrap support for F6UQX1 as seed ortholog is 100%.

Group of orthologs #1530. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.intestinalis:66

Q759L3              	100.00%		H2XQ07              	100.00%
Bootstrap support for Q759L3 as seed ortholog is 100%.
Bootstrap support for H2XQ07 as seed ortholog is 100%.

Group of orthologs #1531. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.intestinalis:66

Q753S6              	100.00%		H2XXY6              	100.00%
Bootstrap support for Q753S6 as seed ortholog is 100%.
Bootstrap support for H2XXY6 as seed ortholog is 100%.

Group of orthologs #1532. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.intestinalis:66

Q75BI2              	100.00%		H2XUU8              	100.00%
Bootstrap support for Q75BI2 as seed ortholog is 100%.
Bootstrap support for H2XUU8 as seed ortholog is 100%.

Group of orthologs #1533. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.intestinalis:65

Q75AV2              	100.00%		F6T047              	100.00%
Bootstrap support for Q75AV2 as seed ortholog is 100%.
Bootstrap support for F6T047 as seed ortholog is 100%.

Group of orthologs #1534. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.intestinalis:65

Q759X0              	100.00%		F6WIH5              	100.00%
Bootstrap support for Q759X0 as seed ortholog is 100%.
Bootstrap support for F6WIH5 as seed ortholog is 100%.

Group of orthologs #1535. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.intestinalis:65

Q75AC1              	100.00%		F6ZGE9              	100.00%
Bootstrap support for Q75AC1 as seed ortholog is 100%.
Bootstrap support for F6ZGE9 as seed ortholog is 100%.

Group of orthologs #1536. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.intestinalis:65

Q75AG5              	100.00%		F7ASB0              	100.00%
Bootstrap support for Q75AG5 as seed ortholog is 100%.
Bootstrap support for F7ASB0 as seed ortholog is 100%.

Group of orthologs #1537. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.intestinalis:65

Q75A22              	100.00%		H2Y196              	100.00%
Bootstrap support for Q75A22 as seed ortholog is 100%.
Bootstrap support for H2Y196 as seed ortholog is 100%.

Group of orthologs #1538. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.intestinalis:64

D8FGB7              	100.00%		F6W7H5              	100.00%
Bootstrap support for D8FGB7 as seed ortholog is 100%.
Bootstrap support for F6W7H5 as seed ortholog is 100%.

Group of orthologs #1539. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.intestinalis:64

Q75B91              	100.00%		F6WWH2              	100.00%
Bootstrap support for Q75B91 as seed ortholog is 100%.
Bootstrap support for F6WWH2 as seed ortholog is 100%.

Group of orthologs #1540. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.intestinalis:64

Q75BE9              	100.00%		F6YZ79              	100.00%
Bootstrap support for Q75BE9 as seed ortholog is 100%.
Bootstrap support for F6YZ79 as seed ortholog is 100%.

Group of orthologs #1541. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.intestinalis:64

Q75AI8              	100.00%		H2XR90              	100.00%
Bootstrap support for Q75AI8 as seed ortholog is 100%.
Bootstrap support for H2XR90 as seed ortholog is 100%.

Group of orthologs #1542. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.intestinalis:64

Q757B0              	100.00%		H2XWJ8              	100.00%
Bootstrap support for Q757B0 as seed ortholog is 100%.
Bootstrap support for H2XWJ8 as seed ortholog is 100%.

Group of orthologs #1543. Best score 63 bits
Score difference with first non-orthologous sequence - A.gossypii:63 C.intestinalis:63

Q74ZT8              	100.00%		H2Y1L1              	100.00%
                    	       		H2XNZ2              	44.73%
                    	       		F7B763              	23.26%
                    	       		F7B757              	21.67%
                    	       		H2XVH5              	20.08%
                    	       		H2XS49              	17.89%
                    	       		H2XKR4              	16.90%
                    	       		H2XQ96              	16.70%
                    	       		F6RBS2              	15.11%
                    	       		F6ZXR3              	10.14%
Bootstrap support for Q74ZT8 as seed ortholog is 100%.
Bootstrap support for H2Y1L1 as seed ortholog is 100%.

Group of orthologs #1544. Best score 63 bits
Score difference with first non-orthologous sequence - A.gossypii:63 C.intestinalis:63

Q754H4              	100.00%		F6PKA8              	100.00%
Bootstrap support for Q754H4 as seed ortholog is 100%.
Bootstrap support for F6PKA8 as seed ortholog is 100%.

Group of orthologs #1545. Best score 63 bits
Score difference with first non-orthologous sequence - A.gossypii:63 C.intestinalis:63

Q758R7              	100.00%		F6YUP9              	100.00%
Bootstrap support for Q758R7 as seed ortholog is 100%.
Bootstrap support for F6YUP9 as seed ortholog is 100%.

Group of orthologs #1546. Best score 63 bits
Score difference with first non-orthologous sequence - A.gossypii:63 C.intestinalis:63

Q75CM9              	100.00%		F7ANT6              	100.00%
Bootstrap support for Q75CM9 as seed ortholog is 100%.
Bootstrap support for F7ANT6 as seed ortholog is 100%.

Group of orthologs #1547. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.intestinalis:62

Q752L8              	100.00%		F6ZGB0              	100.00%
Q752L9              	13.43%		F6V7U4              	7.02%
Bootstrap support for Q752L8 as seed ortholog is 100%.
Bootstrap support for F6ZGB0 as seed ortholog is 100%.

Group of orthologs #1548. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:12 C.intestinalis:62

Q75CI0              	100.00%		F6UP73              	100.00%
                    	       		F6ZH66              	22.69%
Bootstrap support for Q75CI0 as seed ortholog is 68%.
Alternative seed ortholog is Q750B1 (12 bits away from this cluster)
Bootstrap support for F6UP73 as seed ortholog is 100%.

Group of orthologs #1549. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.intestinalis:62

Q75C33              	100.00%		F6X139              	100.00%
                    	       		F6X7G6              	29.18%
Bootstrap support for Q75C33 as seed ortholog is 100%.
Bootstrap support for F6X139 as seed ortholog is 100%.

Group of orthologs #1550. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.intestinalis:62

Q75AZ1              	100.00%		F6TU78              	100.00%
Bootstrap support for Q75AZ1 as seed ortholog is 100%.
Bootstrap support for F6TU78 as seed ortholog is 100%.

Group of orthologs #1551. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.intestinalis:62

Q753I0              	100.00%		F7BEK1              	100.00%
Bootstrap support for Q753I0 as seed ortholog is 100%.
Bootstrap support for F7BEK1 as seed ortholog is 100%.

Group of orthologs #1552. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.intestinalis:18

Q74ZH5              	100.00%		H2XTT8              	100.00%
Bootstrap support for Q74ZH5 as seed ortholog is 100%.
Bootstrap support for H2XTT8 as seed ortholog is 89%.

Group of orthologs #1553. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:8 C.intestinalis:62

Q75BR7              	100.00%		H2XSA5              	100.00%
Bootstrap support for Q75BR7 as seed ortholog is 66%.
Alternative seed ortholog is Q758M9 (8 bits away from this cluster)
Bootstrap support for H2XSA5 as seed ortholog is 100%.

Group of orthologs #1554. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.intestinalis:61

Q74ZK1              	100.00%		F6TJR3              	100.00%
                    	       		F7AV79              	37.75%
                    	       		F6V6C3              	21.57%
Bootstrap support for Q74ZK1 as seed ortholog is 100%.
Bootstrap support for F6TJR3 as seed ortholog is 100%.

Group of orthologs #1555. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.intestinalis:61

Q754B3              	100.00%		H2XW88              	100.00%
                    	       		F7AX27              	43.72%
Bootstrap support for Q754B3 as seed ortholog is 100%.
Bootstrap support for H2XW88 as seed ortholog is 100%.

Group of orthologs #1556. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.intestinalis:61

Q752T5              	100.00%		F6PWH7              	100.00%
Bootstrap support for Q752T5 as seed ortholog is 100%.
Bootstrap support for F6PWH7 as seed ortholog is 100%.

Group of orthologs #1557. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.intestinalis:61

Q756H3              	100.00%		F6T5I8              	100.00%
Bootstrap support for Q756H3 as seed ortholog is 100%.
Bootstrap support for F6T5I8 as seed ortholog is 100%.

Group of orthologs #1558. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:7 C.intestinalis:61

Q75CS9              	100.00%		F6R8L5              	100.00%
Bootstrap support for Q75CS9 as seed ortholog is 77%.
Bootstrap support for F6R8L5 as seed ortholog is 100%.

Group of orthologs #1559. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.intestinalis:61

Q754Q6              	100.00%		F6W282              	100.00%
Bootstrap support for Q754Q6 as seed ortholog is 100%.
Bootstrap support for F6W282 as seed ortholog is 100%.

Group of orthologs #1560. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.intestinalis:61

Q75CG6              	100.00%		F6TUU8              	100.00%
Bootstrap support for Q75CG6 as seed ortholog is 100%.
Bootstrap support for F6TUU8 as seed ortholog is 100%.

Group of orthologs #1561. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.intestinalis:61

Q75DF6              	100.00%		F7A631              	100.00%
Bootstrap support for Q75DF6 as seed ortholog is 100%.
Bootstrap support for F7A631 as seed ortholog is 100%.

Group of orthologs #1562. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.intestinalis:61

Q756V7              	100.00%		H2XVX4              	100.00%
Bootstrap support for Q756V7 as seed ortholog is 100%.
Bootstrap support for H2XVX4 as seed ortholog is 100%.

Group of orthologs #1563. Best score 60 bits
Score difference with first non-orthologous sequence - A.gossypii:60 C.intestinalis:60

Q75DD8              	100.00%		Q4H2J7              	100.00%
Bootstrap support for Q75DD8 as seed ortholog is 100%.
Bootstrap support for Q4H2J7 as seed ortholog is 100%.

Group of orthologs #1564. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.intestinalis:59

Q75DN4              	100.00%		F6QPH0              	100.00%
Bootstrap support for Q75DN4 as seed ortholog is 100%.
Bootstrap support for F6QPH0 as seed ortholog is 100%.

Group of orthologs #1565. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.intestinalis:59

Q750Y2              	100.00%		F6YDG1              	100.00%
Bootstrap support for Q750Y2 as seed ortholog is 100%.
Bootstrap support for F6YDG1 as seed ortholog is 100%.

Group of orthologs #1566. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.intestinalis:59

Q755H6              	100.00%		F6YGD1              	100.00%
Bootstrap support for Q755H6 as seed ortholog is 100%.
Bootstrap support for F6YGD1 as seed ortholog is 100%.

Group of orthologs #1567. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.intestinalis:59

Q75E34              	100.00%		F6XHB2              	100.00%
Bootstrap support for Q75E34 as seed ortholog is 100%.
Bootstrap support for F6XHB2 as seed ortholog is 100%.

Group of orthologs #1568. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.intestinalis:59

Q759V6              	100.00%		H2Y026              	100.00%
Bootstrap support for Q759V6 as seed ortholog is 100%.
Bootstrap support for H2Y026 as seed ortholog is 100%.

Group of orthologs #1569. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.intestinalis:58

Q74ZP3              	100.00%		F6SD48              	100.00%
                    	       		F6V693              	44.14%
                    	       		F6ZAB8              	32.53%
                    	       		F6YLJ0              	32.33%
                    	       		F7AMK6              	32.04%
                    	       		F6VIM5              	31.85%
                    	       		F7AX01              	31.85%
                    	       		F6ZTL3              	31.07%
                    	       		F6TN12              	29.62%
                    	       		F6Z382              	20.33%
                    	       		F6V9J8              	15.39%
Bootstrap support for Q74ZP3 as seed ortholog is 100%.
Bootstrap support for F6SD48 as seed ortholog is 100%.

Group of orthologs #1570. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.intestinalis:58

Q757V0              	100.00%		F6TKL9              	100.00%
Bootstrap support for Q757V0 as seed ortholog is 100%.
Bootstrap support for F6TKL9 as seed ortholog is 100%.

Group of orthologs #1571. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.intestinalis:58

Q75CK2              	100.00%		F7BEV9              	100.00%
Bootstrap support for Q75CK2 as seed ortholog is 100%.
Bootstrap support for F7BEV9 as seed ortholog is 100%.

Group of orthologs #1572. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.intestinalis:58

Q755X8              	100.00%		H2XZU9              	100.00%
Bootstrap support for Q755X8 as seed ortholog is 100%.
Bootstrap support for H2XZU9 as seed ortholog is 100%.

Group of orthologs #1573. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.intestinalis:58

Q74ZP1              	100.00%		Q8I7D9              	100.00%
Bootstrap support for Q74ZP1 as seed ortholog is 100%.
Bootstrap support for Q8I7D9 as seed ortholog is 100%.

Group of orthologs #1574. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.intestinalis:57

Q750F0              	100.00%		F6XW35              	100.00%
Bootstrap support for Q750F0 as seed ortholog is 100%.
Bootstrap support for F6XW35 as seed ortholog is 100%.

Group of orthologs #1575. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.intestinalis:57

Q75D35              	100.00%		F6V1A9              	100.00%
Bootstrap support for Q75D35 as seed ortholog is 100%.
Bootstrap support for F6V1A9 as seed ortholog is 100%.

Group of orthologs #1576. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.intestinalis:57

Q755Q1              	100.00%		F6Z833              	100.00%
Bootstrap support for Q755Q1 as seed ortholog is 100%.
Bootstrap support for F6Z833 as seed ortholog is 100%.

Group of orthologs #1577. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.intestinalis:57

Q757Z9              	100.00%		F6YWD0              	100.00%
Bootstrap support for Q757Z9 as seed ortholog is 100%.
Bootstrap support for F6YWD0 as seed ortholog is 100%.

Group of orthologs #1578. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.intestinalis:57

Q752G6              	100.00%		H2XRD0              	100.00%
Bootstrap support for Q752G6 as seed ortholog is 100%.
Bootstrap support for H2XRD0 as seed ortholog is 100%.

Group of orthologs #1579. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.intestinalis:57

Q754L3              	100.00%		H2XTQ3              	100.00%
Bootstrap support for Q754L3 as seed ortholog is 100%.
Bootstrap support for H2XTQ3 as seed ortholog is 100%.

Group of orthologs #1580. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.intestinalis:57

Q752C2              	100.00%		H2XXK2              	100.00%
Bootstrap support for Q752C2 as seed ortholog is 100%.
Bootstrap support for H2XXK2 as seed ortholog is 100%.

Group of orthologs #1581. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.intestinalis:56

Q759Z3              	100.00%		F6UAX7              	100.00%
                    	       		F6UF46              	7.35%
Bootstrap support for Q759Z3 as seed ortholog is 100%.
Bootstrap support for F6UAX7 as seed ortholog is 100%.

Group of orthologs #1582. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.intestinalis:56

Q756W9              	100.00%		F6QN05              	100.00%
Bootstrap support for Q756W9 as seed ortholog is 100%.
Bootstrap support for F6QN05 as seed ortholog is 100%.

Group of orthologs #1583. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.intestinalis:56

Q74ZN4              	100.00%		F6UTS4              	100.00%
Bootstrap support for Q74ZN4 as seed ortholog is 100%.
Bootstrap support for F6UTS4 as seed ortholog is 100%.

Group of orthologs #1584. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.intestinalis:56

Q756C7              	100.00%		F6T1Y9              	100.00%
Bootstrap support for Q756C7 as seed ortholog is 100%.
Bootstrap support for F6T1Y9 as seed ortholog is 100%.

Group of orthologs #1585. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:7 C.intestinalis:56

Q755G9              	100.00%		F6WMA6              	100.00%
Bootstrap support for Q755G9 as seed ortholog is 55%.
Alternative seed ortholog is Q75EL6 (7 bits away from this cluster)
Bootstrap support for F6WMA6 as seed ortholog is 100%.

Group of orthologs #1586. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.intestinalis:56

Q74Z07              	100.00%		H2XVR3              	100.00%
Bootstrap support for Q74Z07 as seed ortholog is 100%.
Bootstrap support for H2XVR3 as seed ortholog is 100%.

Group of orthologs #1587. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.intestinalis:56

Q75BB0              	100.00%		Q4H3N8              	100.00%
Bootstrap support for Q75BB0 as seed ortholog is 100%.
Bootstrap support for Q4H3N8 as seed ortholog is 100%.

Group of orthologs #1588. Best score 55 bits
Score difference with first non-orthologous sequence - A.gossypii:55 C.intestinalis:55

Q75DK1              	100.00%		H2XZI8              	100.00%
                    	       		H2XQD2              	35.17%
                    	       		H2XVI2              	31.34%
                    	       		F7AVL3              	27.51%
                    	       		H2XNU9              	10.77%
                    	       		H2XQ86              	5.74%
Bootstrap support for Q75DK1 as seed ortholog is 100%.
Bootstrap support for H2XZI8 as seed ortholog is 100%.

Group of orthologs #1589. Best score 55 bits
Score difference with first non-orthologous sequence - A.gossypii:55 C.intestinalis:55

Q753P9              	100.00%		F6VPT6              	100.00%
Bootstrap support for Q753P9 as seed ortholog is 100%.
Bootstrap support for F6VPT6 as seed ortholog is 100%.

Group of orthologs #1590. Best score 55 bits
Score difference with first non-orthologous sequence - A.gossypii:55 C.intestinalis:55

Q754P6              	100.00%		H2XTG7              	100.00%
Bootstrap support for Q754P6 as seed ortholog is 100%.
Bootstrap support for H2XTG7 as seed ortholog is 100%.

Group of orthologs #1591. Best score 55 bits
Score difference with first non-orthologous sequence - A.gossypii:55 C.intestinalis:55

Q75F09              	100.00%		H2XKX7              	100.00%
Bootstrap support for Q75F09 as seed ortholog is 100%.
Bootstrap support for H2XKX7 as seed ortholog is 100%.

Group of orthologs #1592. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.intestinalis:54

Q758W7              	100.00%		F6XMX2              	100.00%
Bootstrap support for Q758W7 as seed ortholog is 100%.
Bootstrap support for F6XMX2 as seed ortholog is 100%.

Group of orthologs #1593. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.intestinalis:54

Q75E02              	100.00%		F7B3P4              	100.00%
Bootstrap support for Q75E02 as seed ortholog is 100%.
Bootstrap support for F7B3P4 as seed ortholog is 100%.

Group of orthologs #1594. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.intestinalis:54

Q753D2              	100.00%		H2XZE6              	100.00%
Bootstrap support for Q753D2 as seed ortholog is 100%.
Bootstrap support for H2XZE6 as seed ortholog is 100%.

Group of orthologs #1595. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.intestinalis:54

Q74Z08              	100.00%		H2Y306              	100.00%
Bootstrap support for Q74Z08 as seed ortholog is 100%.
Bootstrap support for H2Y306 as seed ortholog is 100%.

Group of orthologs #1596. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.intestinalis:54

Q754P7              	100.00%		Q4H3W1              	100.00%
Bootstrap support for Q754P7 as seed ortholog is 100%.
Bootstrap support for Q4H3W1 as seed ortholog is 100%.

Group of orthologs #1597. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.intestinalis:54

Q75EA8              	100.00%		H2Y240              	100.00%
Bootstrap support for Q75EA8 as seed ortholog is 100%.
Bootstrap support for H2Y240 as seed ortholog is 100%.

Group of orthologs #1598. Best score 53 bits
Score difference with first non-orthologous sequence - A.gossypii:53 C.intestinalis:53

Q751M2              	100.00%		F6PNT4              	100.00%
Q757Z2              	22.95%		F6PNS0              	40.69%
Q751M3              	16.38%		
Bootstrap support for Q751M2 as seed ortholog is 100%.
Bootstrap support for F6PNT4 as seed ortholog is 100%.

Group of orthologs #1599. Best score 53 bits
Score difference with first non-orthologous sequence - A.gossypii:53 C.intestinalis:53

Q75CL6              	100.00%		F6PM15              	100.00%
Bootstrap support for Q75CL6 as seed ortholog is 100%.
Bootstrap support for F6PM15 as seed ortholog is 100%.

Group of orthologs #1600. Best score 53 bits
Score difference with first non-orthologous sequence - A.gossypii:53 C.intestinalis:53

Q75AA1              	100.00%		F6SPH4              	100.00%
Bootstrap support for Q75AA1 as seed ortholog is 100%.
Bootstrap support for F6SPH4 as seed ortholog is 100%.

Group of orthologs #1601. Best score 53 bits
Score difference with first non-orthologous sequence - A.gossypii:53 C.intestinalis:53

Q752M0              	100.00%		F6YC04              	100.00%
Bootstrap support for Q752M0 as seed ortholog is 100%.
Bootstrap support for F6YC04 as seed ortholog is 100%.

Group of orthologs #1602. Best score 53 bits
Score difference with first non-orthologous sequence - A.gossypii:53 C.intestinalis:53

Q75BA0              	100.00%		H2Y2X6              	100.00%
Bootstrap support for Q75BA0 as seed ortholog is 100%.
Bootstrap support for H2Y2X6 as seed ortholog is 100%.

Group of orthologs #1603. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:52

Q75F12              	100.00%		H2XWE8              	100.00%
Q751Y2              	5.37%		
Bootstrap support for Q75F12 as seed ortholog is 100%.
Bootstrap support for H2XWE8 as seed ortholog is 100%.

Group of orthologs #1604. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:52

Q751R3              	100.00%		F6QCQ5              	100.00%
Bootstrap support for Q751R3 as seed ortholog is 100%.
Bootstrap support for F6QCQ5 as seed ortholog is 100%.

Group of orthologs #1605. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:52

Q756N3              	100.00%		F6TJV9              	100.00%
Bootstrap support for Q756N3 as seed ortholog is 100%.
Bootstrap support for F6TJV9 as seed ortholog is 100%.

Group of orthologs #1606. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:52

Q750N0              	100.00%		F6ZED0              	100.00%
Bootstrap support for Q750N0 as seed ortholog is 100%.
Bootstrap support for F6ZED0 as seed ortholog is 100%.

Group of orthologs #1607. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:52

Q75A04              	100.00%		F6XNK4              	100.00%
Bootstrap support for Q75A04 as seed ortholog is 100%.
Bootstrap support for F6XNK4 as seed ortholog is 100%.

Group of orthologs #1608. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:52

Q751E4              	100.00%		H2XRT6              	100.00%
Bootstrap support for Q751E4 as seed ortholog is 100%.
Bootstrap support for H2XRT6 as seed ortholog is 100%.

Group of orthologs #1609. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:52

Q75CT7              	100.00%		H2XM31              	100.00%
Bootstrap support for Q75CT7 as seed ortholog is 100%.
Bootstrap support for H2XM31 as seed ortholog is 100%.

Group of orthologs #1610. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:52

Q759X2              	100.00%		H2XRX1              	100.00%
Bootstrap support for Q759X2 as seed ortholog is 100%.
Bootstrap support for H2XRX1 as seed ortholog is 100%.

Group of orthologs #1611. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.intestinalis:52

Q757S0              	100.00%		H2XWM7              	100.00%
Bootstrap support for Q757S0 as seed ortholog is 100%.
Bootstrap support for H2XWM7 as seed ortholog is 100%.

Group of orthologs #1612. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.intestinalis:51

Q750Z4              	100.00%		F6ZNG2              	100.00%
                    	       		F6VRW9              	7.32%
                    	       		F6VWP3              	6.79%
                    	       		F6ZD62              	5.75%
Bootstrap support for Q750Z4 as seed ortholog is 100%.
Bootstrap support for F6ZNG2 as seed ortholog is 100%.

Group of orthologs #1613. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.intestinalis:51

Q74ZD3              	100.00%		F6YX22              	100.00%
Bootstrap support for Q74ZD3 as seed ortholog is 100%.
Bootstrap support for F6YX22 as seed ortholog is 100%.

Group of orthologs #1614. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.intestinalis:51

Q758G8              	100.00%		H2XMF0              	100.00%
Bootstrap support for Q758G8 as seed ortholog is 100%.
Bootstrap support for H2XMF0 as seed ortholog is 100%.

Group of orthologs #1615. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.intestinalis:51

Q75FA3              	100.00%		H2XPZ5              	100.00%
Bootstrap support for Q75FA3 as seed ortholog is 100%.
Bootstrap support for H2XPZ5 as seed ortholog is 100%.

Group of orthologs #1616. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 C.intestinalis:50

Q75D61              	100.00%		H2XX60              	100.00%
Q75EJ4              	6.13%		F6TUQ2              	31.09%
                    	       		H2XUX5              	23.26%
Bootstrap support for Q75D61 as seed ortholog is 100%.
Bootstrap support for H2XX60 as seed ortholog is 100%.

Group of orthologs #1617. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 C.intestinalis:50

Q75D44              	100.00%		F6RZE8              	100.00%
                    	       		F6ZAE1              	5.32%
Bootstrap support for Q75D44 as seed ortholog is 100%.
Bootstrap support for F6RZE8 as seed ortholog is 100%.

Group of orthologs #1618. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 C.intestinalis:50

Q758U1              	100.00%		F6PWX0              	100.00%
Bootstrap support for Q758U1 as seed ortholog is 100%.
Bootstrap support for F6PWX0 as seed ortholog is 100%.

Group of orthologs #1619. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 C.intestinalis:50

Q758S3              	100.00%		H2XYK0              	100.00%
Bootstrap support for Q758S3 as seed ortholog is 100%.
Bootstrap support for H2XYK0 as seed ortholog is 100%.

Group of orthologs #1620. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 C.intestinalis:50

Q759A7              	100.00%		Q4H2P0              	100.00%
Bootstrap support for Q759A7 as seed ortholog is 100%.
Bootstrap support for Q4H2P0 as seed ortholog is 100%.

Group of orthologs #1621. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.intestinalis:49

Q75BK0              	100.00%		F6Q4L9              	100.00%
Bootstrap support for Q75BK0 as seed ortholog is 100%.
Bootstrap support for F6Q4L9 as seed ortholog is 100%.

Group of orthologs #1622. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.intestinalis:49

Q74Z04              	100.00%		F6Y011              	100.00%
Bootstrap support for Q74Z04 as seed ortholog is 100%.
Bootstrap support for F6Y011 as seed ortholog is 100%.

Group of orthologs #1623. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.intestinalis:49

Q754R4              	100.00%		F6WSD2              	100.00%
Bootstrap support for Q754R4 as seed ortholog is 100%.
Bootstrap support for F6WSD2 as seed ortholog is 100%.

Group of orthologs #1624. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.intestinalis:49

Q754U4              	100.00%		H2XS95              	100.00%
Bootstrap support for Q754U4 as seed ortholog is 100%.
Bootstrap support for H2XS95 as seed ortholog is 100%.

Group of orthologs #1625. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:5 C.intestinalis:49

Q75F30              	100.00%		H2XJN3              	100.00%
Bootstrap support for Q75F30 as seed ortholog is 60%.
Alternative seed ortholog is Q75B80 (5 bits away from this cluster)
Bootstrap support for H2XJN3 as seed ortholog is 100%.

Group of orthologs #1626. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.intestinalis:49

Q75D21              	100.00%		H2XN89              	100.00%
Bootstrap support for Q75D21 as seed ortholog is 100%.
Bootstrap support for H2XN89 as seed ortholog is 100%.

Group of orthologs #1627. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.intestinalis:49

Q75ER5              	100.00%		H2XZ38              	100.00%
Bootstrap support for Q75ER5 as seed ortholog is 100%.
Bootstrap support for H2XZ38 as seed ortholog is 100%.

Group of orthologs #1628. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.intestinalis:49

Q75D94              	100.00%		H2Y1V8              	100.00%
Bootstrap support for Q75D94 as seed ortholog is 100%.
Bootstrap support for H2Y1V8 as seed ortholog is 100%.

Group of orthologs #1629. Best score 48 bits
Score difference with first non-orthologous sequence - A.gossypii:48 C.intestinalis:48

Q758A3              	100.00%		F7ANS1              	100.00%
Q755I1              	14.70%		F6R6X6              	33.00%
Q752J6              	10.82%		F6ZDN7              	32.20%
Q750H7              	7.25%		F6W5S5              	22.63%
                    	       		H2XJL0              	15.85%
Bootstrap support for Q758A3 as seed ortholog is 100%.
Bootstrap support for F7ANS1 as seed ortholog is 100%.

Group of orthologs #1630. Best score 48 bits
Score difference with first non-orthologous sequence - A.gossypii:48 C.intestinalis:48

Q75BN7              	100.00%		H2XJJ6              	100.00%
Bootstrap support for Q75BN7 as seed ortholog is 100%.
Bootstrap support for H2XJJ6 as seed ortholog is 100%.

Group of orthologs #1631. Best score 48 bits
Score difference with first non-orthologous sequence - A.gossypii:48 C.intestinalis:48

Q759P0              	100.00%		H2XUR3              	100.00%
Bootstrap support for Q759P0 as seed ortholog is 100%.
Bootstrap support for H2XUR3 as seed ortholog is 100%.

Group of orthologs #1632. Best score 48 bits
Score difference with first non-orthologous sequence - A.gossypii:48 C.intestinalis:48

Q756G1              	100.00%		H2XY84              	100.00%
Bootstrap support for Q756G1 as seed ortholog is 100%.
Bootstrap support for H2XY84 as seed ortholog is 100%.

Group of orthologs #1633. Best score 47 bits
Score difference with first non-orthologous sequence - A.gossypii:47 C.intestinalis:47

Q753C4              	100.00%		H2XJM4              	100.00%
Bootstrap support for Q753C4 as seed ortholog is 100%.
Bootstrap support for H2XJM4 as seed ortholog is 100%.

Group of orthologs #1634. Best score 47 bits
Score difference with first non-orthologous sequence - A.gossypii:47 C.intestinalis:47

Q75DG5              	100.00%		F7AB27              	100.00%
Bootstrap support for Q75DG5 as seed ortholog is 100%.
Bootstrap support for F7AB27 as seed ortholog is 100%.

Group of orthologs #1635. Best score 47 bits
Score difference with first non-orthologous sequence - A.gossypii:47 C.intestinalis:47

Q75DX1              	100.00%		F7AD34              	100.00%
Bootstrap support for Q75DX1 as seed ortholog is 100%.
Bootstrap support for F7AD34 as seed ortholog is 100%.

Group of orthologs #1636. Best score 46 bits
Score difference with first non-orthologous sequence - A.gossypii:46 C.intestinalis:46

Q75AA3              	100.00%		H2XLV9              	100.00%
Q75AN3              	23.36%		
Bootstrap support for Q75AA3 as seed ortholog is 100%.
Bootstrap support for H2XLV9 as seed ortholog is 100%.

Group of orthologs #1637. Best score 46 bits
Score difference with first non-orthologous sequence - A.gossypii:46 C.intestinalis:46

Q755F9              	100.00%		F6TAS2              	100.00%
Bootstrap support for Q755F9 as seed ortholog is 100%.
Bootstrap support for F6TAS2 as seed ortholog is 100%.

Group of orthologs #1638. Best score 46 bits
Score difference with first non-orthologous sequence - A.gossypii:46 C.intestinalis:46

Q9HF53              	100.00%		H2Y340              	100.00%
Bootstrap support for Q9HF53 as seed ortholog is 100%.
Bootstrap support for H2Y340 as seed ortholog is 100%.

Group of orthologs #1639. Best score 45 bits
Score difference with first non-orthologous sequence - A.gossypii:45 C.intestinalis:45

Q753I5              	100.00%		F6R6C4              	100.00%
Bootstrap support for Q753I5 as seed ortholog is 100%.
Bootstrap support for F6R6C4 as seed ortholog is 100%.

Group of orthologs #1640. Best score 45 bits
Score difference with first non-orthologous sequence - A.gossypii:45 C.intestinalis:45

Q757U1              	100.00%		F6QDJ6              	100.00%
Bootstrap support for Q757U1 as seed ortholog is 100%.
Bootstrap support for F6QDJ6 as seed ortholog is 100%.

Group of orthologs #1641. Best score 44 bits
Score difference with first non-orthologous sequence - A.gossypii:44 C.intestinalis:44

Q75CN9              	100.00%		F6S4Y6              	100.00%
Bootstrap support for Q75CN9 as seed ortholog is 100%.
Bootstrap support for F6S4Y6 as seed ortholog is 100%.

Group of orthologs #1642. Best score 44 bits
Score difference with first non-orthologous sequence - A.gossypii:44 C.intestinalis:44

Q750C3              	100.00%		F6WRI2              	100.00%
Bootstrap support for Q750C3 as seed ortholog is 100%.
Bootstrap support for F6WRI2 as seed ortholog is 100%.

Group of orthologs #1643. Best score 44 bits
Score difference with first non-orthologous sequence - A.gossypii:44 C.intestinalis:44

Q751G3              	100.00%		F6Z3A0              	100.00%
Bootstrap support for Q751G3 as seed ortholog is 100%.
Bootstrap support for F6Z3A0 as seed ortholog is 100%.

Group of orthologs #1644. Best score 44 bits
Score difference with first non-orthologous sequence - A.gossypii:44 C.intestinalis:44

Q753X6              	100.00%		H2XYX0              	100.00%
Bootstrap support for Q753X6 as seed ortholog is 100%.
Bootstrap support for H2XYX0 as seed ortholog is 100%.

Group of orthologs #1645. Best score 43 bits
Score difference with first non-orthologous sequence - A.gossypii:43 C.intestinalis:43

Q754K9              	100.00%		F6S840              	100.00%
Bootstrap support for Q754K9 as seed ortholog is 100%.
Bootstrap support for F6S840 as seed ortholog is 100%.

Group of orthologs #1646. Best score 43 bits
Score difference with first non-orthologous sequence - A.gossypii:43 C.intestinalis:43

P62511              	100.00%		F6VKX1              	100.00%
Bootstrap support for P62511 as seed ortholog is 100%.
Bootstrap support for F6VKX1 as seed ortholog is 100%.

Group of orthologs #1647. Best score 42 bits
Score difference with first non-orthologous sequence - A.gossypii:42 C.intestinalis:42

Q757U0              	100.00%		F6XVG4              	100.00%
Bootstrap support for Q757U0 as seed ortholog is 100%.
Bootstrap support for F6XVG4 as seed ortholog is 100%.

Group of orthologs #1648. Best score 42 bits
Score difference with first non-orthologous sequence - A.gossypii:42 C.intestinalis:42

Q758B4              	100.00%		F7ALL0              	100.00%
Bootstrap support for Q758B4 as seed ortholog is 100%.
Bootstrap support for F7ALL0 as seed ortholog is 100%.

Group of orthologs #1649. Best score 42 bits
Score difference with first non-orthologous sequence - A.gossypii:42 C.intestinalis:42

Q758S0              	100.00%		F7BEL6              	100.00%
Bootstrap support for Q758S0 as seed ortholog is 100%.
Bootstrap support for F7BEL6 as seed ortholog is 100%.

Group of orthologs #1650. Best score 41 bits
Score difference with first non-orthologous sequence - A.gossypii:41 C.intestinalis:41

Q74ZD4              	100.00%		F6VKW3              	100.00%
Bootstrap support for Q74ZD4 as seed ortholog is 100%.
Bootstrap support for F6VKW3 as seed ortholog is 100%.

Group of orthologs #1651. Best score 41 bits
Score difference with first non-orthologous sequence - A.gossypii:41 C.intestinalis:41

Q757H9              	100.00%		H2XP82              	100.00%
Bootstrap support for Q757H9 as seed ortholog is 100%.
Bootstrap support for H2XP82 as seed ortholog is 100%.