<?xml version="1.0" encoding="utf-8"?>
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  </notes>
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    <notes>
      <additionalInformation abbreviation="M.larici-populina" link="http://www.uniprot.org/taxonomy/747676"/>
    </notes>
  </species>
  <species name="Thermotoga maritima " NCBITaxId="243274">
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        <gene id="251" protId="Q9WZC2" geneId="speE"/>
        <gene id="253" protId="P77993" geneId="gyrB"/>
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        <gene id="274" protId="O33836" geneId="galT"/>
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        <gene id="282" protId="Q9WYG2" geneId="TM_0327"/>
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        <gene id="286" protId="P36205" geneId="glnA"/>
        <gene id="288" protId="Q9X248" geneId="fabG"/>
        <gene id="289" protId="Q9WYG0" geneId="TM_0325"/>
        <gene id="291" protId="Q9X0X6" geneId="purH"/>
        <gene id="293" protId="Q9WYI2" geneId="aroC"/>
        <gene id="295" protId="Q9X0I0" geneId="purB"/>
        <gene id="297" protId="Q9WZI0" geneId="upp"/>
        <gene id="299" protId="Q9WZR4" geneId="TM_0807"/>
        <gene id="301" protId="P38515" geneId="rplC"/>
        <gene id="303" protId="Q56318" geneId="TM_0019"/>
        <gene id="305" protId="Q9X0C6" geneId="hisF"/>
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        <gene id="310" protId="Q9WYW2" geneId="trpS"/>
        <gene id="312" protId="Q9WY13" geneId="TM_0166"/>
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        <gene id="317" protId="Q9X1F4" geneId="aspS"/>
        <gene id="320" protId="Q9X1T9" geneId="TM_1603"/>
        <gene id="322" protId="Q9X0Y2" geneId="aspC"/>
        <gene id="324" protId="Q9X251" geneId="panB"/>
        <gene id="326" protId="Q9WYW0" geneId="cobB"/>
        <gene id="328" protId="Q9X1A4" geneId="apt"/>
        <gene id="330" protId="Q9WZP4" geneId="TM_0787"/>
        <gene id="332" protId="Q9WYA4" geneId="mnmE"/>
        <gene id="334" protId="Q9WY55" geneId="gcvH"/>
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        <gene id="344" protId="Q9WYU8" geneId="tyrS"/>
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        <gene id="354" protId="Q9X1K6" geneId="TM_1518"/>
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        <gene id="357" protId="P46799" geneId="topA"/>
        <gene id="358" protId="O51934" geneId="rgy"/>
        <gene id="360" protId="Q9WYZ5" geneId="miaA"/>
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        <gene id="395" protId="O33832" geneId="suhB"/>
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        <gene id="473" protId="O33833" geneId="bfrA"/>
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        <gene id="493" protId="Q9WYC5" geneId="TM_0289"/>
        <gene id="495" protId="Q9WXM7" geneId="TM_0012"/>
        <gene id="496" protId="Q9S5X7" geneId="TM_1424"/>
        <gene id="498" protId="Q9X0C9" geneId="hisB"/>
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        <gene id="514" protId="Q56307" geneId="lacZ"/>
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        <gene id="522" protId="Q9WZV7" geneId="TM_0853"/>
        <gene id="523" protId="Q9X180" geneId="TM_1359"/>
        <gene id="525" protId="P38508" geneId="rplN"/>
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        <gene id="766" protId="Q9WZD0" geneId="acpP"/>
        <gene id="768" protId="Q9X1G4" geneId="rpsI"/>
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        <gene id="793" protId="Q9WZV4" geneId="grpE"/>
        <gene id="795" protId="P58288" geneId="rpmH"/>
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        <gene id="807" protId="Q9WYH0" geneId="pyrC"/>
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        <gene id="812" protId="Q9X0C7" geneId="hisA"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="T.maritima" link="http://www.uniprot.org/taxonomy/243274"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="4">
        <score id="inparalog" value="1"/>
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      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="613"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="4">
      <score id="bit" value="584"/>
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        <score id="bootstrap" value="0.93"/>
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      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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    <orthologGroup id="5">
      <score id="bit" value="582"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="6">
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        <score id="bootstrap" value="1"/>
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      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="13">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="559"/>
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