###################################
140 groups of orthologs
145 in-paralogs from C.trachomatis
203 in-paralogs from L.braziliensis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 888 bits
Score difference with first non-orthologous sequence - C.trachomatis:778 L.braziliensis:888

O84022              	100.00%		A4HQ78              	100.00%
Bootstrap support for O84022 as seed ortholog is 100%.
Bootstrap support for A4HQ78 as seed ortholog is 100%.

Group of orthologs #2. Best score 705 bits
Score difference with first non-orthologous sequence - C.trachomatis:148 L.braziliensis:25

O84115              	100.00%		A4HHD8              	100.00%
Bootstrap support for O84115 as seed ortholog is 99%.
Bootstrap support for A4HHD8 as seed ortholog is 71%.
Alternative seed ortholog is A4HG34 (25 bits away from this cluster)

Group of orthologs #3. Best score 658 bits
Score difference with first non-orthologous sequence - C.trachomatis:658 L.braziliensis:119

P17821              	100.00%		A4HIH8              	100.00%
                    	       		A4HII0              	98.38%
Bootstrap support for P17821 as seed ortholog is 100%.
Bootstrap support for A4HIH8 as seed ortholog is 99%.

Group of orthologs #4. Best score 543 bits
Score difference with first non-orthologous sequence - C.trachomatis:368 L.braziliensis:207

P0C0Z7              	100.00%		A4HP70              	100.00%
                    	       		A4HP69              	83.08%
                    	       		A4HKH3              	13.16%
Bootstrap support for P0C0Z7 as seed ortholog is 100%.
Bootstrap support for A4HP70 as seed ortholog is 100%.

Group of orthologs #5. Best score 524 bits
Score difference with first non-orthologous sequence - C.trachomatis:404 L.braziliensis:439

O84304              	100.00%		A4HIP7              	100.00%
Bootstrap support for O84304 as seed ortholog is 100%.
Bootstrap support for A4HIP7 as seed ortholog is 100%.

Group of orthologs #6. Best score 493 bits
Score difference with first non-orthologous sequence - C.trachomatis:493 L.braziliensis:493

O84057              	100.00%		A4HFL1              	100.00%
                    	       		A4HPL4              	10.54%
Bootstrap support for O84057 as seed ortholog is 100%.
Bootstrap support for A4HFL1 as seed ortholog is 100%.

Group of orthologs #7. Best score 489 bits
Score difference with first non-orthologous sequence - C.trachomatis:489 L.braziliensis:489

O84755              	100.00%		A4HDR8              	100.00%
Bootstrap support for O84755 as seed ortholog is 100%.
Bootstrap support for A4HDR8 as seed ortholog is 100%.

Group of orthologs #8. Best score 455 bits
Score difference with first non-orthologous sequence - C.trachomatis:455 L.braziliensis:455

O84834              	100.00%		A4HGD3              	100.00%
Bootstrap support for O84834 as seed ortholog is 100%.
Bootstrap support for A4HGD3 as seed ortholog is 100%.

Group of orthologs #9. Best score 448 bits
Score difference with first non-orthologous sequence - C.trachomatis:370 L.braziliensis:448

O84585              	100.00%		A4HMG3              	100.00%
Bootstrap support for O84585 as seed ortholog is 100%.
Bootstrap support for A4HMG3 as seed ortholog is 100%.

Group of orthologs #10. Best score 439 bits
Score difference with first non-orthologous sequence - C.trachomatis:439 L.braziliensis:439

O84754              	100.00%		A4HCJ3              	100.00%
Bootstrap support for O84754 as seed ortholog is 100%.
Bootstrap support for A4HCJ3 as seed ortholog is 100%.

Group of orthologs #11. Best score 436 bits
Score difference with first non-orthologous sequence - C.trachomatis:436 L.braziliensis:142

O84444              	100.00%		A4HNR7              	100.00%
Bootstrap support for O84444 as seed ortholog is 100%.
Bootstrap support for A4HNR7 as seed ortholog is 99%.

Group of orthologs #12. Best score 423 bits
Score difference with first non-orthologous sequence - C.trachomatis:423 L.braziliensis:423

O84392              	100.00%		A4HMK4              	100.00%
Bootstrap support for O84392 as seed ortholog is 100%.
Bootstrap support for A4HMK4 as seed ortholog is 100%.

Group of orthologs #13. Best score 419 bits
Score difference with first non-orthologous sequence - C.trachomatis:419 L.braziliensis:63

O84126              	100.00%		A4H339              	100.00%
Bootstrap support for O84126 as seed ortholog is 100%.
Bootstrap support for A4H339 as seed ortholog is 94%.

Group of orthologs #14. Best score 406 bits
Score difference with first non-orthologous sequence - C.trachomatis:406 L.braziliensis:406

O84460              	100.00%		A4HFQ8              	100.00%
Bootstrap support for O84460 as seed ortholog is 100%.
Bootstrap support for A4HFQ8 as seed ortholog is 100%.

Group of orthologs #15. Best score 395 bits
Score difference with first non-orthologous sequence - C.trachomatis:395 L.braziliensis:395

Q59321              	100.00%		E9AIB3              	100.00%
Bootstrap support for Q59321 as seed ortholog is 100%.
Bootstrap support for E9AIB3 as seed ortholog is 100%.

Group of orthologs #16. Best score 390 bits
Score difference with first non-orthologous sequence - C.trachomatis:390 L.braziliensis:234

P0CD71              	100.00%		A4H9I5              	100.00%
Bootstrap support for P0CD71 as seed ortholog is 100%.
Bootstrap support for A4H9I5 as seed ortholog is 100%.

Group of orthologs #17. Best score 373 bits
Score difference with first non-orthologous sequence - C.trachomatis:373 L.braziliensis:46

O84848              	100.00%		A4HPD5              	100.00%
Bootstrap support for O84848 as seed ortholog is 100%.
Bootstrap support for A4HPD5 as seed ortholog is 87%.

Group of orthologs #18. Best score 371 bits
Score difference with first non-orthologous sequence - C.trachomatis:371 L.braziliensis:371

O84310              	100.00%		A4HB86              	100.00%
Bootstrap support for O84310 as seed ortholog is 100%.
Bootstrap support for A4HB86 as seed ortholog is 100%.

Group of orthologs #19. Best score 337 bits
Score difference with first non-orthologous sequence - C.trachomatis:337 L.braziliensis:210

O84067              	100.00%		A4HAG7              	100.00%
Bootstrap support for O84067 as seed ortholog is 100%.
Bootstrap support for A4HAG7 as seed ortholog is 99%.

Group of orthologs #20. Best score 325 bits
Score difference with first non-orthologous sequence - C.trachomatis:325 L.braziliensis:325

O84829              	100.00%		A4HEB6              	100.00%
Bootstrap support for O84829 as seed ortholog is 100%.
Bootstrap support for A4HEB6 as seed ortholog is 100%.

Group of orthologs #21. Best score 324 bits
Score difference with first non-orthologous sequence - C.trachomatis:324 L.braziliensis:324

O84823              	100.00%		A4H4Q8              	100.00%
Bootstrap support for O84823 as seed ortholog is 100%.
Bootstrap support for A4H4Q8 as seed ortholog is 100%.

Group of orthologs #22. Best score 314 bits
Score difference with first non-orthologous sequence - C.trachomatis:314 L.braziliensis:314

P0CD78              	100.00%		A4HBH9              	100.00%
                    	       		A4HIS6              	6.43%
Bootstrap support for P0CD78 as seed ortholog is 100%.
Bootstrap support for A4HBH9 as seed ortholog is 100%.

Group of orthologs #23. Best score 306 bits
Score difference with first non-orthologous sequence - C.trachomatis:306 L.braziliensis:224

P0CE13              	100.00%		A4HIN0              	100.00%
Bootstrap support for P0CE13 as seed ortholog is 100%.
Bootstrap support for A4HIN0 as seed ortholog is 100%.

Group of orthologs #24. Best score 304 bits
Score difference with first non-orthologous sequence - C.trachomatis:304 L.braziliensis:304

O84066              	100.00%		A4HN01              	100.00%
Bootstrap support for O84066 as seed ortholog is 100%.
Bootstrap support for A4HN01 as seed ortholog is 100%.

Group of orthologs #25. Best score 296 bits
Score difference with first non-orthologous sequence - C.trachomatis:240 L.braziliensis:121

O84561              	100.00%		A4HKX6              	100.00%
Bootstrap support for O84561 as seed ortholog is 100%.
Bootstrap support for A4HKX6 as seed ortholog is 99%.

Group of orthologs #26. Best score 295 bits
Score difference with first non-orthologous sequence - C.trachomatis:295 L.braziliensis:84

O84248              	100.00%		A4HEH1              	100.00%
Bootstrap support for O84248 as seed ortholog is 100%.
Bootstrap support for A4HEH1 as seed ortholog is 99%.

Group of orthologs #27. Best score 284 bits
Score difference with first non-orthologous sequence - C.trachomatis:284 L.braziliensis:284

O84786              	100.00%		A4H7Z6              	100.00%
Bootstrap support for O84786 as seed ortholog is 100%.
Bootstrap support for A4H7Z6 as seed ortholog is 100%.

Group of orthologs #28. Best score 282 bits
Score difference with first non-orthologous sequence - C.trachomatis:282 L.braziliensis:282

P0CD72              	100.00%		A4H6W2              	100.00%
Bootstrap support for P0CD72 as seed ortholog is 100%.
Bootstrap support for A4H6W2 as seed ortholog is 100%.

Group of orthologs #29. Best score 280 bits
Score difference with first non-orthologous sequence - C.trachomatis:280 L.braziliensis:280

O84315              	100.00%		A4H8J8              	100.00%
Bootstrap support for O84315 as seed ortholog is 100%.
Bootstrap support for A4H8J8 as seed ortholog is 100%.

Group of orthologs #30. Best score 277 bits
Score difference with first non-orthologous sequence - C.trachomatis:277 L.braziliensis:277

O84188              	100.00%		A4HAD3              	100.00%
Bootstrap support for O84188 as seed ortholog is 100%.
Bootstrap support for A4HAD3 as seed ortholog is 100%.

Group of orthologs #31. Best score 270 bits
Score difference with first non-orthologous sequence - C.trachomatis:270 L.braziliensis:270

O84831              	100.00%		A4H4V3              	100.00%
Bootstrap support for O84831 as seed ortholog is 100%.
Bootstrap support for A4H4V3 as seed ortholog is 100%.

Group of orthologs #32. Best score 263 bits
Score difference with first non-orthologous sequence - C.trachomatis:263 L.braziliensis:263

O84316              	100.00%		A4HJP9              	100.00%
                    	       		A4HAF0              	9.49%
Bootstrap support for O84316 as seed ortholog is 100%.
Bootstrap support for A4HJP9 as seed ortholog is 100%.

Group of orthologs #33. Best score 263 bits
Score difference with first non-orthologous sequence - C.trachomatis:263 L.braziliensis:263

O84098              	100.00%		A4HCG6              	100.00%
Bootstrap support for O84098 as seed ortholog is 100%.
Bootstrap support for A4HCG6 as seed ortholog is 100%.

Group of orthologs #34. Best score 262 bits
Score difference with first non-orthologous sequence - C.trachomatis:262 L.braziliensis:262

O84591              	100.00%		A4H7T5              	100.00%
Bootstrap support for O84591 as seed ortholog is 100%.
Bootstrap support for A4H7T5 as seed ortholog is 100%.

Group of orthologs #35. Best score 252 bits
Score difference with first non-orthologous sequence - C.trachomatis:252 L.braziliensis:45

O84797              	100.00%		A4HP61              	100.00%
Bootstrap support for O84797 as seed ortholog is 100%.
Bootstrap support for A4HP61 as seed ortholog is 77%.

Group of orthologs #36. Best score 251 bits
Score difference with first non-orthologous sequence - C.trachomatis:251 L.braziliensis:251

P0CE21              	100.00%		A4HM36              	100.00%
                    	       		A4HM39              	90.31%
                    	       		A4HM41              	88.62%
Bootstrap support for P0CE21 as seed ortholog is 100%.
Bootstrap support for A4HM36 as seed ortholog is 100%.

Group of orthologs #37. Best score 250 bits
Score difference with first non-orthologous sequence - C.trachomatis:250 L.braziliensis:164

O84352              	100.00%		A4H3I8              	100.00%
                    	       		A4HA37              	13.85%
                    	       		A4HL68              	6.17%
Bootstrap support for O84352 as seed ortholog is 100%.
Bootstrap support for A4H3I8 as seed ortholog is 99%.

Group of orthologs #38. Best score 250 bits
Score difference with first non-orthologous sequence - C.trachomatis:250 L.braziliensis:250

O84439              	100.00%		A4HGU0              	100.00%
                    	       		A4H7V2              	44.04%
Bootstrap support for O84439 as seed ortholog is 100%.
Bootstrap support for A4HGU0 as seed ortholog is 100%.

Group of orthologs #39. Best score 250 bits
Score difference with first non-orthologous sequence - C.trachomatis:250 L.braziliensis:250

O84309              	100.00%		A4HGU6              	100.00%
Bootstrap support for O84309 as seed ortholog is 100%.
Bootstrap support for A4HGU6 as seed ortholog is 100%.

Group of orthologs #40. Best score 249 bits
Score difference with first non-orthologous sequence - C.trachomatis:249 L.braziliensis:249

O84828              	100.00%		A4HPG1              	100.00%
Bootstrap support for O84828 as seed ortholog is 100%.
Bootstrap support for A4HPG1 as seed ortholog is 100%.

Group of orthologs #41. Best score 245 bits
Score difference with first non-orthologous sequence - C.trachomatis:245 L.braziliensis:30

O84094              	100.00%		A4HG11              	100.00%
Bootstrap support for O84094 as seed ortholog is 100%.
Bootstrap support for A4HG11 as seed ortholog is 78%.

Group of orthologs #42. Best score 242 bits
Score difference with first non-orthologous sequence - C.trachomatis:77 L.braziliensis:128

O84058              	100.00%		A4HGU5              	100.00%
Bootstrap support for O84058 as seed ortholog is 97%.
Bootstrap support for A4HGU5 as seed ortholog is 99%.

Group of orthologs #43. Best score 240 bits
Score difference with first non-orthologous sequence - C.trachomatis:240 L.braziliensis:240

O84562              	100.00%		A4H9Z3              	100.00%
Bootstrap support for O84562 as seed ortholog is 100%.
Bootstrap support for A4H9Z3 as seed ortholog is 100%.

Group of orthologs #44. Best score 238 bits
Score difference with first non-orthologous sequence - C.trachomatis:238 L.braziliensis:68

O84698              	100.00%		A4H5Y5              	100.00%
                    	       		A4H6C2              	100.00%
                    	       		A4HBH2              	55.31%
                    	       		A4HH06              	36.24%
Bootstrap support for O84698 as seed ortholog is 100%.
Bootstrap support for A4H5Y5 as seed ortholog is 81%.
Bootstrap support for A4H6C2 as seed ortholog is 82%.

Group of orthologs #45. Best score 235 bits
Score difference with first non-orthologous sequence - C.trachomatis:235 L.braziliensis:235

O84642              	100.00%		A4HD93              	100.00%
Bootstrap support for O84642 as seed ortholog is 100%.
Bootstrap support for A4HD93 as seed ortholog is 100%.

Group of orthologs #46. Best score 233 bits
Score difference with first non-orthologous sequence - C.trachomatis:233 L.braziliensis:233

P0CE09              	100.00%		A4HBG9              	100.00%
                    	       		A4HIZ1              	17.09%
Bootstrap support for P0CE09 as seed ortholog is 100%.
Bootstrap support for A4HBG9 as seed ortholog is 100%.

Group of orthologs #47. Best score 233 bits
Score difference with first non-orthologous sequence - C.trachomatis:233 L.braziliensis:42

O84345              	100.00%		A4H3Y7              	100.00%
Bootstrap support for O84345 as seed ortholog is 100%.
Bootstrap support for A4H3Y7 as seed ortholog is 88%.

Group of orthologs #48. Best score 231 bits
Score difference with first non-orthologous sequence - C.trachomatis:231 L.braziliensis:83

O84049              	100.00%		A4HCW4              	100.00%
Bootstrap support for O84049 as seed ortholog is 100%.
Bootstrap support for A4HCW4 as seed ortholog is 99%.

Group of orthologs #49. Best score 230 bits
Score difference with first non-orthologous sequence - C.trachomatis:103 L.braziliensis:87

O84249              	100.00%		A4HPD2              	100.00%
Bootstrap support for O84249 as seed ortholog is 98%.
Bootstrap support for A4HPD2 as seed ortholog is 96%.

Group of orthologs #50. Best score 225 bits
Score difference with first non-orthologous sequence - C.trachomatis:225 L.braziliensis:183

O84297              	100.00%		A4HB98              	100.00%
Bootstrap support for O84297 as seed ortholog is 100%.
Bootstrap support for A4HB98 as seed ortholog is 99%.

Group of orthologs #51. Best score 225 bits
Score difference with first non-orthologous sequence - C.trachomatis:225 L.braziliensis:171

O84381              	100.00%		A4HGY9              	100.00%
Bootstrap support for O84381 as seed ortholog is 100%.
Bootstrap support for A4HGY9 as seed ortholog is 100%.

Group of orthologs #52. Best score 223 bits
Score difference with first non-orthologous sequence - C.trachomatis:223 L.braziliensis:126

O84596              	100.00%		A4HDM3              	100.00%
Bootstrap support for O84596 as seed ortholog is 100%.
Bootstrap support for A4HDM3 as seed ortholog is 100%.

Group of orthologs #53. Best score 219 bits
Score difference with first non-orthologous sequence - C.trachomatis:219 L.braziliensis:219

O84081              	100.00%		A4HEN9              	100.00%
Bootstrap support for O84081 as seed ortholog is 100%.
Bootstrap support for A4HEN9 as seed ortholog is 100%.

Group of orthologs #54. Best score 215 bits
Score difference with first non-orthologous sequence - C.trachomatis:215 L.braziliensis:215

O84775              	100.00%		A4HLY3              	100.00%
Bootstrap support for O84775 as seed ortholog is 100%.
Bootstrap support for A4HLY3 as seed ortholog is 100%.

Group of orthologs #55. Best score 208 bits
Score difference with first non-orthologous sequence - C.trachomatis:208 L.braziliensis:82

O84732              	100.00%		A4HLS1              	100.00%
Bootstrap support for O84732 as seed ortholog is 100%.
Bootstrap support for A4HLS1 as seed ortholog is 94%.

Group of orthologs #56. Best score 201 bits
Score difference with first non-orthologous sequence - C.trachomatis:201 L.braziliensis:201

O84423              	100.00%		A4HPG5              	100.00%
Bootstrap support for O84423 as seed ortholog is 100%.
Bootstrap support for A4HPG5 as seed ortholog is 100%.

Group of orthologs #57. Best score 199 bits
Score difference with first non-orthologous sequence - C.trachomatis:199 L.braziliensis:199

O84859              	100.00%		A4HA12              	100.00%
Bootstrap support for O84859 as seed ortholog is 100%.
Bootstrap support for A4HA12 as seed ortholog is 100%.

Group of orthologs #58. Best score 187 bits
Score difference with first non-orthologous sequence - C.trachomatis:187 L.braziliensis:187

O84332              	100.00%		E9AIG9              	100.00%
Bootstrap support for O84332 as seed ortholog is 100%.
Bootstrap support for E9AIG9 as seed ortholog is 100%.

Group of orthologs #59. Best score 183 bits
Score difference with first non-orthologous sequence - C.trachomatis:183 L.braziliensis:183

O84734              	100.00%		A4H9U8              	100.00%
Bootstrap support for O84734 as seed ortholog is 100%.
Bootstrap support for A4H9U8 as seed ortholog is 100%.

Group of orthologs #60. Best score 175 bits
Score difference with first non-orthologous sequence - C.trachomatis:175 L.braziliensis:175

O84812              	100.00%		A4HJV3              	100.00%
Bootstrap support for O84812 as seed ortholog is 100%.
Bootstrap support for A4HJV3 as seed ortholog is 100%.

Group of orthologs #61. Best score 171 bits
Score difference with first non-orthologous sequence - C.trachomatis:171 L.braziliensis:171

O84608              	100.00%		A4H877              	100.00%
                    	       		A4H879              	97.93%
                    	       		A4HCL7              	12.81%
Bootstrap support for O84608 as seed ortholog is 100%.
Bootstrap support for A4H877 as seed ortholog is 100%.

Group of orthologs #62. Best score 171 bits
Score difference with first non-orthologous sequence - C.trachomatis:171 L.braziliensis:70

O84028              	100.00%		A4HDD0              	100.00%
Bootstrap support for O84028 as seed ortholog is 100%.
Bootstrap support for A4HDD0 as seed ortholog is 97%.

Group of orthologs #63. Best score 165 bits
Score difference with first non-orthologous sequence - C.trachomatis:165 L.braziliensis:165

O84613              	100.00%		A4H9F6              	100.00%
Bootstrap support for O84613 as seed ortholog is 100%.
Bootstrap support for A4H9F6 as seed ortholog is 100%.

Group of orthologs #64. Best score 165 bits
Score difference with first non-orthologous sequence - C.trachomatis:165 L.braziliensis:165

O84266              	100.00%		A4HKV4              	100.00%
Bootstrap support for O84266 as seed ortholog is 100%.
Bootstrap support for A4HKV4 as seed ortholog is 100%.

Group of orthologs #65. Best score 161 bits
Score difference with first non-orthologous sequence - C.trachomatis:161 L.braziliensis:53

O84649              	100.00%		A4HBL0              	100.00%
Bootstrap support for O84649 as seed ortholog is 100%.
Bootstrap support for A4HBL0 as seed ortholog is 82%.

Group of orthologs #66. Best score 155 bits
Score difference with first non-orthologous sequence - C.trachomatis:155 L.braziliensis:155

O84614              	100.00%		A4H5P1              	100.00%
Bootstrap support for O84614 as seed ortholog is 100%.
Bootstrap support for A4H5P1 as seed ortholog is 100%.

Group of orthologs #67. Best score 155 bits
Score difference with first non-orthologous sequence - C.trachomatis:155 L.braziliensis:63

O84247              	100.00%		A4H9P1              	100.00%
Bootstrap support for O84247 as seed ortholog is 100%.
Bootstrap support for A4H9P1 as seed ortholog is 96%.

Group of orthologs #68. Best score 153 bits
Score difference with first non-orthologous sequence - C.trachomatis:153 L.braziliensis:153

O84402              	100.00%		A4HG74              	100.00%
                    	       		A4HG84              	6.01%
Bootstrap support for O84402 as seed ortholog is 100%.
Bootstrap support for A4HG74 as seed ortholog is 100%.

Group of orthologs #69. Best score 153 bits
Score difference with first non-orthologous sequence - C.trachomatis:153 L.braziliensis:153

O84719              	100.00%		A4H643              	100.00%
Bootstrap support for O84719 as seed ortholog is 100%.
Bootstrap support for A4H643 as seed ortholog is 100%.

Group of orthologs #70. Best score 152 bits
Score difference with first non-orthologous sequence - C.trachomatis:152 L.braziliensis:23

O84676              	100.00%		A4HE61              	100.00%
O84722              	13.84%		
Bootstrap support for O84676 as seed ortholog is 100%.
Bootstrap support for A4HE61 as seed ortholog is 75%.

Group of orthologs #71. Best score 152 bits
Score difference with first non-orthologous sequence - C.trachomatis:152 L.braziliensis:152

O84035              	100.00%		A4HBS8              	100.00%
Bootstrap support for O84035 as seed ortholog is 100%.
Bootstrap support for A4HBS8 as seed ortholog is 100%.

Group of orthologs #72. Best score 150 bits
Score difference with first non-orthologous sequence - C.trachomatis:150 L.braziliensis:150

O84196              	100.00%		A4H932              	100.00%
Bootstrap support for O84196 as seed ortholog is 100%.
Bootstrap support for A4H932 as seed ortholog is 100%.

Group of orthologs #73. Best score 149 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 L.braziliensis:149

O84154              	100.00%		A4H9V4              	100.00%
Bootstrap support for O84154 as seed ortholog is 95%.
Bootstrap support for A4H9V4 as seed ortholog is 100%.

Group of orthologs #74. Best score 147 bits
Score difference with first non-orthologous sequence - C.trachomatis:147 L.braziliensis:147

O84109              	100.00%		A4HGR8              	100.00%
Bootstrap support for O84109 as seed ortholog is 100%.
Bootstrap support for A4HGR8 as seed ortholog is 100%.

Group of orthologs #75. Best score 141 bits
Score difference with first non-orthologous sequence - C.trachomatis:141 L.braziliensis:141

O84546              	100.00%		A4HHZ7              	100.00%
                    	       		A4HBV0              	23.33%
Bootstrap support for O84546 as seed ortholog is 100%.
Bootstrap support for A4HHZ7 as seed ortholog is 100%.

Group of orthologs #76. Best score 137 bits
Score difference with first non-orthologous sequence - C.trachomatis:137 L.braziliensis:137

O84026              	100.00%		A4HE77              	100.00%
O84465              	6.87%		
Bootstrap support for O84026 as seed ortholog is 100%.
Bootstrap support for A4HE77 as seed ortholog is 100%.

Group of orthologs #77. Best score 136 bits
Score difference with first non-orthologous sequence - C.trachomatis:136 L.braziliensis:72

O84296              	100.00%		A4H599              	100.00%
                    	       		A4HKQ4              	10.76%
                    	       		A4HKH1              	5.23%
Bootstrap support for O84296 as seed ortholog is 100%.
Bootstrap support for A4H599 as seed ortholog is 99%.

Group of orthologs #78. Best score 127 bits
Score difference with first non-orthologous sequence - C.trachomatis:127 L.braziliensis:127

O84835              	100.00%		A4HCG7              	100.00%
                    	       		A4HFY2              	100.00%
Bootstrap support for O84835 as seed ortholog is 100%.
Bootstrap support for A4HCG7 as seed ortholog is 100%.
Bootstrap support for A4HFY2 as seed ortholog is 100%.

Group of orthologs #79. Best score 124 bits
Score difference with first non-orthologous sequence - C.trachomatis:23 L.braziliensis:124

O84260              	100.00%		A4HFN0              	100.00%
                    	       		A4HMV1              	8.28%
Bootstrap support for O84260 as seed ortholog is 28%.
Alternative seed ortholog is O84693 (23 bits away from this cluster)
Bootstrap support for A4HFN0 as seed ortholog is 100%.

Group of orthologs #80. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:123 L.braziliensis:123

O84123              	100.00%		A4HN39              	100.00%
                    	       		A4HLL7              	20.05%
Bootstrap support for O84123 as seed ortholog is 100%.
Bootstrap support for A4HN39 as seed ortholog is 100%.

Group of orthologs #81. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:123 L.braziliensis:123

O84709              	100.00%		A4HEN6              	100.00%
Bootstrap support for O84709 as seed ortholog is 100%.
Bootstrap support for A4HEN6 as seed ortholog is 100%.

Group of orthologs #82. Best score 120 bits
Score difference with first non-orthologous sequence - C.trachomatis:120 L.braziliensis:120

O84508              	100.00%		A4HKT7              	100.00%
                    	       		A4HKT8              	100.00%
Bootstrap support for O84508 as seed ortholog is 100%.
Bootstrap support for A4HKT7 as seed ortholog is 100%.
Bootstrap support for A4HKT8 as seed ortholog is 100%.

Group of orthologs #83. Best score 119 bits
Score difference with first non-orthologous sequence - C.trachomatis:119 L.braziliensis:26

P38004              	100.00%		A4HG24              	100.00%
Bootstrap support for P38004 as seed ortholog is 100%.
Bootstrap support for A4HG24 as seed ortholog is 79%.

Group of orthologs #84. Best score 119 bits
Score difference with first non-orthologous sequence - C.trachomatis:119 L.braziliensis:119

O84547              	100.00%		A4HI14              	100.00%
Bootstrap support for O84547 as seed ortholog is 100%.
Bootstrap support for A4HI14 as seed ortholog is 100%.

Group of orthologs #85. Best score 115 bits
Score difference with first non-orthologous sequence - C.trachomatis:115 L.braziliensis:1

O84130              	100.00%		A4HNZ4              	100.00%
Bootstrap support for O84130 as seed ortholog is 100%.
Bootstrap support for A4HNZ4 as seed ortholog is 46%.
Alternative seed ortholog is A4HAC3 (1 bits away from this cluster)

Group of orthologs #86. Best score 110 bits
Score difference with first non-orthologous sequence - C.trachomatis:110 L.braziliensis:110

O84289              	100.00%		A4H4V6              	100.00%
Bootstrap support for O84289 as seed ortholog is 100%.
Bootstrap support for A4H4V6 as seed ortholog is 100%.

Group of orthologs #87. Best score 110 bits
Score difference with first non-orthologous sequence - C.trachomatis:110 L.braziliensis:110

O84391              	100.00%		A4H5R5              	100.00%
Bootstrap support for O84391 as seed ortholog is 100%.
Bootstrap support for A4H5R5 as seed ortholog is 100%.

Group of orthologs #88. Best score 110 bits
Score difference with first non-orthologous sequence - C.trachomatis:110 L.braziliensis:110

O84033              	100.00%		A4HLG3              	100.00%
Bootstrap support for O84033 as seed ortholog is 100%.
Bootstrap support for A4HLG3 as seed ortholog is 100%.

Group of orthologs #89. Best score 108 bits
Score difference with first non-orthologous sequence - C.trachomatis:108 L.braziliensis:51

O84781              	100.00%		A4HA52              	100.00%
Bootstrap support for O84781 as seed ortholog is 100%.
Bootstrap support for A4HA52 as seed ortholog is 87%.

Group of orthologs #90. Best score 105 bits
Score difference with first non-orthologous sequence - C.trachomatis:105 L.braziliensis:105

O84668              	100.00%		A4H891              	100.00%
O84193              	13.98%		A4HGT2              	21.15%
Bootstrap support for O84668 as seed ortholog is 100%.
Bootstrap support for A4H891 as seed ortholog is 100%.

Group of orthologs #91. Best score 97 bits
Score difference with first non-orthologous sequence - C.trachomatis:97 L.braziliensis:97

O84200              	100.00%		A4HIX4              	100.00%
Bootstrap support for O84200 as seed ortholog is 100%.
Bootstrap support for A4HIX4 as seed ortholog is 100%.

Group of orthologs #92. Best score 97 bits
Score difference with first non-orthologous sequence - C.trachomatis:97 L.braziliensis:33

O84530              	100.00%		A4HL27              	100.00%
Bootstrap support for O84530 as seed ortholog is 100%.
Bootstrap support for A4HL27 as seed ortholog is 86%.

Group of orthologs #93. Best score 95 bits
Score difference with first non-orthologous sequence - C.trachomatis:95 L.braziliensis:95

O84456              	100.00%		A4H710              	100.00%
Bootstrap support for O84456 as seed ortholog is 100%.
Bootstrap support for A4H710 as seed ortholog is 100%.

Group of orthologs #94. Best score 92 bits
Score difference with first non-orthologous sequence - C.trachomatis:92 L.braziliensis:13

O84358              	100.00%		A4HHW5              	100.00%
Bootstrap support for O84358 as seed ortholog is 100%.
Bootstrap support for A4HHW5 as seed ortholog is 75%.

Group of orthologs #95. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 L.braziliensis:87

O84435              	100.00%		A4HQ50              	100.00%
Bootstrap support for O84435 as seed ortholog is 100%.
Bootstrap support for A4HQ50 as seed ortholog is 100%.

Group of orthologs #96. Best score 86 bits
Score difference with first non-orthologous sequence - C.trachomatis:86 L.braziliensis:86

O84843              	100.00%		A4HK68              	100.00%
Bootstrap support for O84843 as seed ortholog is 100%.
Bootstrap support for A4HK68 as seed ortholog is 100%.

Group of orthologs #97. Best score 84 bits
Score difference with first non-orthologous sequence - C.trachomatis:84 L.braziliensis:5

O84665              	100.00%		A4HIC8              	100.00%
O84108              	5.11%		
Bootstrap support for O84665 as seed ortholog is 100%.
Bootstrap support for A4HIC8 as seed ortholog is 81%.

Group of orthologs #98. Best score 82 bits
Score difference with first non-orthologous sequence - C.trachomatis:82 L.braziliensis:82

O84307              	100.00%		A4HK73              	100.00%
                    	       		A4HD35              	25.16%
Bootstrap support for O84307 as seed ortholog is 100%.
Bootstrap support for A4HK73 as seed ortholog is 100%.

Group of orthologs #99. Best score 81 bits
Score difference with first non-orthologous sequence - C.trachomatis:81 L.braziliensis:81

O84710              	100.00%		A4H434              	100.00%
O84415              	10.50%		
Bootstrap support for O84710 as seed ortholog is 100%.
Bootstrap support for A4H434 as seed ortholog is 100%.

Group of orthologs #100. Best score 80 bits
Score difference with first non-orthologous sequence - C.trachomatis:80 L.braziliensis:80

O84578              	100.00%		A4HMQ9              	100.00%
Bootstrap support for O84578 as seed ortholog is 100%.
Bootstrap support for A4HMQ9 as seed ortholog is 100%.

Group of orthologs #101. Best score 78 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 L.braziliensis:78

O84822              	100.00%		A4H3S0              	100.00%
Bootstrap support for O84822 as seed ortholog is 100%.
Bootstrap support for A4H3S0 as seed ortholog is 100%.

Group of orthologs #102. Best score 78 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 L.braziliensis:78

P0CD81              	100.00%		A4HN50              	100.00%
Bootstrap support for P0CD81 as seed ortholog is 100%.
Bootstrap support for A4HN50 as seed ortholog is 100%.

Group of orthologs #103. Best score 77 bits
Score difference with first non-orthologous sequence - C.trachomatis:77 L.braziliensis:77

O84469              	100.00%		A4HIA0              	100.00%
Bootstrap support for O84469 as seed ortholog is 100%.
Bootstrap support for A4HIA0 as seed ortholog is 100%.

Group of orthologs #104. Best score 75 bits
Score difference with first non-orthologous sequence - C.trachomatis:75 L.braziliensis:75

O84703              	100.00%		A4H5I2              	100.00%
Bootstrap support for O84703 as seed ortholog is 100%.
Bootstrap support for A4H5I2 as seed ortholog is 100%.

Group of orthologs #105. Best score 73 bits
Score difference with first non-orthologous sequence - C.trachomatis:73 L.braziliensis:73

O84189              	100.00%		A4HFB4              	100.00%
Bootstrap support for O84189 as seed ortholog is 100%.
Bootstrap support for A4HFB4 as seed ortholog is 100%.

Group of orthologs #106. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:72 L.braziliensis:13

O84338              	100.00%		A4HFI1              	100.00%
                    	       		A4HMZ2              	18.85%
                    	       		A4HIJ5              	13.74%
Bootstrap support for O84338 as seed ortholog is 100%.
Bootstrap support for A4HFI1 as seed ortholog is 71%.
Alternative seed ortholog is A4HB68 (13 bits away from this cluster)

Group of orthologs #107. Best score 71 bits
Score difference with first non-orthologous sequence - C.trachomatis:71 L.braziliensis:71

O84139              	100.00%		E9AIT1              	100.00%
Bootstrap support for O84139 as seed ortholog is 100%.
Bootstrap support for E9AIT1 as seed ortholog is 100%.

Group of orthologs #108. Best score 70 bits
Score difference with first non-orthologous sequence - C.trachomatis:70 L.braziliensis:70

O84686              	100.00%		A4HH79              	100.00%
Bootstrap support for O84686 as seed ortholog is 100%.
Bootstrap support for A4HH79 as seed ortholog is 100%.

Group of orthologs #109. Best score 70 bits
Score difference with first non-orthologous sequence - C.trachomatis:70 L.braziliensis:70

O84284              	100.00%		A4HND8              	100.00%
Bootstrap support for O84284 as seed ortholog is 100%.
Bootstrap support for A4HND8 as seed ortholog is 100%.

Group of orthologs #110. Best score 69 bits
Score difference with first non-orthologous sequence - C.trachomatis:69 L.braziliensis:69

O84442              	100.00%		A4HAY4              	100.00%
                    	       		A4HGH1              	8.28%
Bootstrap support for O84442 as seed ortholog is 100%.
Bootstrap support for A4HAY4 as seed ortholog is 100%.

Group of orthologs #111. Best score 69 bits
Score difference with first non-orthologous sequence - C.trachomatis:69 L.braziliensis:69

P0C0Z8              	100.00%		A4HER9              	100.00%
                    	       		A4HER7              	98.45%
Bootstrap support for P0C0Z8 as seed ortholog is 100%.
Bootstrap support for A4HER9 as seed ortholog is 100%.

Group of orthologs #112. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 L.braziliensis:66

P0A4C8              	100.00%		A4H9W3              	100.00%
                    	       		A4HK25              	100.00%
Bootstrap support for P0A4C8 as seed ortholog is 100%.
Bootstrap support for A4H9W3 as seed ortholog is 100%.
Bootstrap support for A4HK25 as seed ortholog is 100%.

Group of orthologs #113. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 L.braziliensis:66

O84782              	100.00%		A4HB93              	100.00%
                    	       		E9AIW0              	5.91%
Bootstrap support for O84782 as seed ortholog is 100%.
Bootstrap support for A4HB93 as seed ortholog is 100%.

Group of orthologs #114. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 L.braziliensis:66

P0CE03              	100.00%		A4HGE0              	100.00%
Bootstrap support for P0CE03 as seed ortholog is 100%.
Bootstrap support for A4HGE0 as seed ortholog is 100%.

Group of orthologs #115. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 L.braziliensis:66

O84579              	100.00%		A4HMI7              	100.00%
Bootstrap support for O84579 as seed ortholog is 100%.
Bootstrap support for A4HMI7 as seed ortholog is 100%.

Group of orthologs #116. Best score 62 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 L.braziliensis:62

O84633              	100.00%		A4H875              	100.00%
Bootstrap support for O84633 as seed ortholog is 100%.
Bootstrap support for A4H875 as seed ortholog is 100%.

Group of orthologs #117. Best score 61 bits
Score difference with first non-orthologous sequence - C.trachomatis:61 L.braziliensis:61

O84599              	100.00%		A4HFM3              	100.00%
                    	       		A4H6P9              	11.86%
Bootstrap support for O84599 as seed ortholog is 100%.
Bootstrap support for A4HFM3 as seed ortholog is 100%.

Group of orthologs #118. Best score 61 bits
Score difference with first non-orthologous sequence - C.trachomatis:61 L.braziliensis:61

O84353              	100.00%		A4HK85              	100.00%
Bootstrap support for O84353 as seed ortholog is 100%.
Bootstrap support for A4HK85 as seed ortholog is 100%.

Group of orthologs #119. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 L.braziliensis:59

O84779              	100.00%		A4H860              	100.00%
Bootstrap support for O84779 as seed ortholog is 100%.
Bootstrap support for A4H860 as seed ortholog is 100%.

Group of orthologs #120. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 L.braziliensis:59

O84689              	100.00%		A4HP97              	100.00%
Bootstrap support for O84689 as seed ortholog is 100%.
Bootstrap support for A4HP97 as seed ortholog is 100%.

Group of orthologs #121. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 L.braziliensis:56

O84390              	100.00%		A4H7I4              	100.00%
Bootstrap support for O84390 as seed ortholog is 100%.
Bootstrap support for A4H7I4 as seed ortholog is 100%.

Group of orthologs #122. Best score 55 bits
Score difference with first non-orthologous sequence - C.trachomatis:55 L.braziliensis:55

P0CD80              	100.00%		A4HNF3              	100.00%
                    	       		A4HG95              	43.10%
Bootstrap support for P0CD80 as seed ortholog is 100%.
Bootstrap support for A4HNF3 as seed ortholog is 100%.

Group of orthologs #123. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 L.braziliensis:54

O84258              	100.00%		A4HAY2              	100.00%
                    	       		A4H9B8              	20.02%
                    	       		A4H9B9              	14.99%
Bootstrap support for O84258 as seed ortholog is 100%.
Bootstrap support for A4HAY2 as seed ortholog is 100%.

Group of orthologs #124. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 L.braziliensis:54

P36424              	100.00%		A4HI25              	100.00%
                    	       		A4HI26              	11.08%
Bootstrap support for P36424 as seed ortholog is 100%.
Bootstrap support for A4HI25 as seed ortholog is 100%.

Group of orthologs #125. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 L.braziliensis:54

O84492              	100.00%		A4H9A4              	100.00%
Bootstrap support for O84492 as seed ortholog is 100%.
Bootstrap support for A4H9A4 as seed ortholog is 100%.

Group of orthologs #126. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 L.braziliensis:54

O84395              	100.00%		A4HPA3              	100.00%
Bootstrap support for O84395 as seed ortholog is 100%.
Bootstrap support for A4HPA3 as seed ortholog is 100%.

Group of orthologs #127. Best score 52 bits
Score difference with first non-orthologous sequence - C.trachomatis:52 L.braziliensis:52

P66370              	100.00%		A4HBW6              	100.00%
Bootstrap support for P66370 as seed ortholog is 100%.
Bootstrap support for A4HBW6 as seed ortholog is 100%.

Group of orthologs #128. Best score 51 bits
Score difference with first non-orthologous sequence - C.trachomatis:51 L.braziliensis:2

O84544              	100.00%		A4HES2              	100.00%
Bootstrap support for O84544 as seed ortholog is 100%.
Bootstrap support for A4HES2 as seed ortholog is 53%.
Alternative seed ortholog is A4H351 (2 bits away from this cluster)

Group of orthologs #129. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 L.braziliensis:50

P0CE04              	100.00%		A4HNV2              	100.00%
Bootstrap support for P0CE04 as seed ortholog is 100%.
Bootstrap support for A4HNV2 as seed ortholog is 100%.

Group of orthologs #130. Best score 48 bits
Score difference with first non-orthologous sequence - C.trachomatis:48 L.braziliensis:48

O84527              	100.00%		A4H868              	100.00%
                    	       		A4HLE6              	100.00%
Bootstrap support for O84527 as seed ortholog is 100%.
Bootstrap support for A4H868 as seed ortholog is 100%.
Bootstrap support for A4HLE6 as seed ortholog is 100%.

Group of orthologs #131. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 L.braziliensis:44

O84851              	100.00%		A4H663              	100.00%
Bootstrap support for O84851 as seed ortholog is 100%.
Bootstrap support for A4H663 as seed ortholog is 100%.

Group of orthologs #132. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 L.braziliensis:44

P0CD79              	100.00%		A4HNC6              	100.00%
Bootstrap support for P0CD79 as seed ortholog is 100%.
Bootstrap support for A4HNC6 as seed ortholog is 100%.

Group of orthologs #133. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 L.braziliensis:43

O84147              	100.00%		A4HJW2              	100.00%
                    	       		A4HJT5              	40.10%
                    	       		A4HLR0              	38.40%
                    	       		A4HCE6              	26.12%
                    	       		A4HP12              	24.79%
                    	       		A4HP13              	23.45%
                    	       		A4HHQ5              	22.72%
                    	       		A4HKG9              	20.90%
                    	       		A4H3C7              	11.42%
                    	       		A4H539              	10.94%
                    	       		A4H9H4              	10.45%
                    	       		A4H9L8              	8.75%
                    	       		A4HN71              	8.63%
                    	       		A4HED7              	8.38%
                    	       		A4HH03              	8.38%
                    	       		A4H8C4              	7.90%
                    	       		A4HG92              	7.29%
                    	       		A4HCD7              	7.17%
                    	       		A4HNT2              	7.05%
                    	       		A4HFA1              	6.56%
                    	       		A4HDU3              	5.71%
                    	       		A4HHN1              	5.59%
                    	       		A4H4S9              	5.10%
                    	       		A4HAS1              	5.10%
Bootstrap support for O84147 as seed ortholog is 100%.
Bootstrap support for A4HJW2 as seed ortholog is 100%.

Group of orthologs #134. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 L.braziliensis:43

P0CE06              	100.00%		A4H6M2              	100.00%
                    	       		A4H6M3              	67.66%
Bootstrap support for P0CE06 as seed ortholog is 100%.
Bootstrap support for A4H6M2 as seed ortholog is 100%.

Group of orthologs #135. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 L.braziliensis:43

O84191              	100.00%		A4H5Y8              	100.00%
Bootstrap support for O84191 as seed ortholog is 100%.
Bootstrap support for A4H5Y8 as seed ortholog is 100%.

Group of orthologs #136. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 L.braziliensis:42

P0CE02              	100.00%		A4HGE5              	100.00%
Bootstrap support for P0CE02 as seed ortholog is 100%.
Bootstrap support for A4HGE5 as seed ortholog is 100%.

Group of orthologs #137. Best score 41 bits
Score difference with first non-orthologous sequence - C.trachomatis:41 L.braziliensis:41

P0CD88              	100.00%		A4H3W7              	100.00%
Bootstrap support for P0CD88 as seed ortholog is 100%.
Bootstrap support for A4H3W7 as seed ortholog is 100%.

Group of orthologs #138. Best score 41 bits
Score difference with first non-orthologous sequence - C.trachomatis:41 L.braziliensis:41

O84219              	100.00%		A4HQD1              	100.00%
Bootstrap support for O84219 as seed ortholog is 100%.
Bootstrap support for A4HQD1 as seed ortholog is 100%.

Group of orthologs #139. Best score 40 bits
Score difference with first non-orthologous sequence - C.trachomatis:40 L.braziliensis:40

P0CD83              	100.00%		A4H7P8              	100.00%
Bootstrap support for P0CD83 as seed ortholog is 100%.
Bootstrap support for A4H7P8 as seed ortholog is 100%.

Group of orthologs #140. Best score 40 bits
Score difference with first non-orthologous sequence - C.trachomatis:40 L.braziliensis:40

O84032              	100.00%		A4HNS4              	100.00%
Bootstrap support for O84032 as seed ortholog is 100%.
Bootstrap support for A4HNS4 as seed ortholog is 100%.